Wall clock time and date at job start Tue Mar 31 2020 17:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.59123 * 2 1 4 4 C 1.53192 * 109.58962 * 239.71544 * 2 1 3 5 5 C 1.53043 * 109.31728 * 185.57969 * 4 2 1 6 6 C 1.53041 * 109.52684 * 61.37053 * 5 4 2 7 7 C 1.53199 * 109.31080 * 298.61677 * 6 5 4 8 8 N 1.46925 * 108.76408 * 54.65675 * 7 6 5 9 9 C 1.34779 * 120.62827 * 126.36159 * 8 7 6 10 10 O 1.21279 * 119.99768 * 184.81626 * 9 8 7 11 11 C 1.50693 * 119.99944 * 4.82074 * 9 8 7 12 12 O 1.45205 * 109.47012 * 180.02562 * 11 9 8 13 13 C 1.34773 * 117.00026 * 179.97438 * 12 11 9 14 14 O 1.21505 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.47510 * 120.00130 * 179.97438 * 13 12 11 16 16 C 1.40068 * 119.89610 * 359.72600 * 15 13 12 17 17 C 1.36303 * 120.09545 * 179.72093 * 16 15 13 18 18 C 1.40900 * 119.89957 * 0.54832 * 17 16 15 19 19 C 1.41089 * 120.09755 * 179.74209 * 18 17 16 20 20 H 1.08002 * 119.99859 * 205.47494 * 19 18 17 21 21 C 1.40245 * 119.99991 * 25.48244 * 19 18 17 22 22 N 1.30633 * 120.00387 * 16.74042 * 21 19 18 23 23 Si 1.86800 * 119.99829 * 196.73727 * 21 19 18 24 24 H 1.48504 * 109.46798 * 90.00273 * 23 21 19 25 25 H 1.48505 * 109.47106 * 209.99701 * 23 21 19 26 26 H 1.48499 * 109.47525 * 330.00014 * 23 21 19 27 27 C 1.40902 * 119.80278 * 359.72758 * 18 17 16 28 28 C 1.36300 * 119.89629 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46950 * 183.86052 * 1 2 3 30 30 H 1.09004 * 109.47004 * 303.85942 * 1 2 3 31 31 H 1.09000 * 109.46901 * 63.85496 * 1 2 3 32 32 H 1.08997 * 109.49466 * 65.62339 * 4 2 1 33 33 H 1.09002 * 109.49775 * 305.53233 * 4 2 1 34 34 H 1.08997 * 109.46038 * 181.38415 * 5 4 2 35 35 H 1.08997 * 109.45516 * 301.36015 * 5 4 2 36 36 H 1.08998 * 109.49589 * 58.58257 * 6 5 4 37 37 H 1.08995 * 109.49297 * 178.68126 * 6 5 4 38 38 H 1.08998 * 109.59530 * 294.86920 * 7 6 5 39 39 H 1.08997 * 109.70035 * 174.50899 * 7 6 5 40 40 H 1.09001 * 109.47042 * 299.99720 * 11 9 8 41 41 H 1.08998 * 109.47445 * 60.00295 * 11 9 8 42 42 H 1.07994 * 119.95240 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.04923 * 180.28009 * 17 16 15 44 44 H 0.96995 * 120.00331 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.04864 * 180.02562 * 27 18 17 46 46 H 1.07998 * 119.94684 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8466 -1.1712 6 6 3.9567 -1.6660 0.0614 7 6 3.4651 -0.9486 1.3226 8 7 2.0226 -0.7010 1.1936 9 6 1.1674 -1.1096 2.1518 10 8 -0.0279 -0.9779 1.9941 11 6 1.6964 -1.7300 3.4192 12 8 0.5857 -2.0837 4.2851 13 6 0.8895 -2.6542 5.4678 14 8 2.0506 -2.8502 5.7673 15 6 -0.1875 -3.0395 6.3991 16 6 -1.5250 -2.8063 6.0546 17 6 -2.5237 -3.1660 6.9096 18 6 -2.2085 -3.7626 8.1465 19 6 -3.2387 -4.1315 9.0371 20 1 -3.0397 -4.1943 10.0968 21 6 -4.5211 -4.4169 8.5463 22 7 -4.6941 -4.6634 7.2751 23 14 -5.9818 -4.4448 9.7103 24 1 -6.5823 -3.0886 9.7834 25 1 -6.9951 -5.4084 9.2101 26 1 -5.5295 -4.8595 11.0626 27 6 -0.8613 -3.9899 8.4913 28 6 0.1306 -3.6326 7.6275 29 1 -0.3633 -1.0253 0.0692 30 1 -0.3633 0.5726 0.8534 31 1 -0.3633 0.4528 -0.9225 32 1 1.7660 -0.1642 -2.1370 33 1 1.6030 -1.7237 -1.2935 34 1 3.9378 -1.3423 -2.0685 35 1 4.0061 0.1486 -1.0988 36 1 3.4979 -2.6529 0.0018 37 1 5.0409 -1.7701 0.1015 38 1 3.9903 0.0002 1.4316 39 1 3.6521 -1.5723 2.1967 40 1 2.2657 -2.6268 3.1745 41 1 2.3433 -1.0170 3.9303 42 1 -1.7655 -2.3454 5.1080 43 1 -3.5549 -2.9899 6.6413 44 1 -5.5811 -4.8604 6.9356 45 1 -0.6152 -4.4474 9.4382 46 1 1.1634 -3.8061 7.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758677801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:33 Heat of formation + Delta-G solvation = -114.040290 kcal Electronic energy + Delta-G solvation = -27761.222685 eV Core-core repulsion = 23807.987093 eV Total energy + Delta-G solvation = -3953.235592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85580 -41.07174 -39.30009 -38.44181 -37.20446 -35.76064 -34.30608 -33.67541 -32.26793 -31.39601 -29.92559 -28.39419 -27.70235 -25.56604 -24.30897 -23.16333 -22.83312 -21.97397 -21.66420 -20.19129 -19.41299 -18.79218 -18.09932 -17.72780 -17.46187 -17.17814 -16.85429 -16.28855 -15.78931 -15.42977 -15.39505 -15.21881 -15.05935 -14.76456 -14.57965 -14.33032 -14.05689 -13.90590 -13.77735 -13.58046 -13.34560 -13.28815 -13.24293 -12.89343 -12.72302 -12.66988 -12.41334 -12.08603 -11.93187 -11.82411 -11.82198 -11.60627 -11.51249 -11.45131 -11.32028 -11.16562 -10.20553 -9.65862 -9.65120 -9.54523 -8.85139 -6.56986 0.20107 1.12087 1.29403 1.35324 1.38273 1.40878 1.54364 1.85206 2.14199 2.23741 2.66660 3.29431 3.60528 3.75313 3.83015 3.90174 3.96578 4.00218 4.05715 4.18593 4.26948 4.32104 4.35601 4.40972 4.49219 4.64626 4.72623 4.80136 4.91358 4.92202 4.96850 5.03104 5.06232 5.09897 5.15363 5.19570 5.22651 5.27333 5.35061 5.44971 5.54645 5.64436 5.78475 5.88705 5.95039 6.12971 6.21217 6.48009 6.68599 6.80306 6.92507 7.03628 8.09479 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.002298 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.111518 B =12179.454858 C =13196.531894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.142 3.858 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.094 3.906 8 N -0.602 5.602 9 C 0.514 3.486 10 O -0.549 6.549 11 C 0.044 3.956 12 O -0.351 6.351 13 C 0.522 3.478 14 O -0.560 6.560 15 C -0.291 4.291 16 C -0.041 4.041 17 C -0.203 4.203 18 C 0.105 3.895 19 C -0.456 4.456 20 H 0.097 0.903 21 C 0.032 3.968 22 N -0.794 5.794 23 Si 0.994 3.006 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.251 1.251 27 C -0.247 4.247 28 C -0.019 4.019 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.299 0.701 45 H 0.119 0.881 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 7.535 -14.865 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.172 4.172 7 C -0.028 4.028 8 N -0.337 5.337 9 C 0.302 3.698 10 O -0.427 6.427 11 C -0.033 4.033 12 O -0.267 6.267 13 C 0.375 3.625 14 O -0.455 6.455 15 C -0.293 4.293 16 C -0.060 4.060 17 C -0.222 4.222 18 C 0.102 3.898 19 C -0.482 4.482 20 H 0.115 0.885 21 C -0.188 4.188 22 N -0.417 5.417 23 Si 0.813 3.187 24 H -0.184 1.184 25 H -0.190 1.190 26 H -0.174 1.174 27 C -0.266 4.266 28 C -0.037 4.037 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.137 0.863 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.243 7.487 -15.099 20.831 hybrid contribution -0.630 -0.259 0.322 0.753 sum 11.614 7.227 -14.778 20.137 Atomic orbital electron populations 1.22088 0.94264 1.02036 1.00708 1.21485 0.94558 0.96057 0.83887 0.88998 1.22007 0.97127 1.00620 0.96873 1.21529 0.94317 1.01329 0.98226 1.21937 1.02573 0.98776 0.93926 1.22155 0.78173 1.02407 1.00040 1.48151 1.08222 1.57494 1.19847 1.20214 0.86500 0.78520 0.84595 1.90814 1.17079 1.55531 1.79261 1.22908 0.88494 1.02509 0.89428 1.86639 1.38345 1.72853 1.28907 1.21323 0.88509 0.73258 0.79423 1.90664 1.21921 1.56071 1.76850 1.18415 0.91053 1.22027 0.97837 1.20749 0.92021 0.95595 0.97666 1.21006 0.98307 1.05719 0.97207 1.18214 0.92963 0.86478 0.92191 1.20271 0.94244 1.37576 0.96146 0.88546 1.27107 1.03364 0.90958 0.97360 1.69776 1.26923 1.28334 1.16623 0.85014 0.75535 0.79497 0.78675 1.18442 1.18984 1.17399 1.20896 0.92480 1.11393 1.01872 1.20520 0.98676 0.93088 0.91462 0.93749 0.93530 0.91677 0.88949 0.93057 0.90370 0.90223 0.92662 0.88138 0.88585 0.89325 0.87325 0.86971 0.87600 0.87120 0.88969 0.86336 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.59 71.98 0.55 -2.69 16 2 C 0.14 2.56 3.49 44.97 0.16 2.72 16 3 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 4 C -0.13 -1.69 5.37 30.67 0.16 -1.53 16 5 C -0.12 -1.05 5.88 30.62 0.18 -0.87 16 6 C -0.13 -1.37 6.08 30.67 0.19 -1.18 16 7 C 0.09 1.22 6.33 86.37 0.55 1.77 16 8 N -0.60 -12.47 2.97 -795.03 -2.36 -14.83 16 9 C 0.51 15.34 7.68 87.65 0.67 16.02 16 10 O -0.55 -21.00 11.90 15.77 0.19 -20.81 16 11 C 0.04 1.32 4.35 71.23 0.31 1.63 16 12 O -0.35 -14.60 8.98 -50.45 -0.45 -15.05 16 13 C 0.52 23.53 7.89 70.27 0.55 24.08 16 14 O -0.56 -25.15 16.11 19.82 0.32 -24.83 16 15 C -0.29 -14.22 5.89 -19.95 -0.12 -14.34 16 16 C -0.04 -2.10 9.55 22.26 0.21 -1.88 16 17 C -0.20 -10.78 8.63 22.47 0.19 -10.59 16 18 C 0.10 5.51 5.57 -21.28 -0.12 5.39 16 19 C -0.46 -22.75 9.05 23.46 0.21 -22.54 16 20 H 0.10 4.48 7.90 -2.91 -0.02 4.46 16 21 C 0.03 1.49 5.15 85.36 0.44 1.93 16 22 N -0.79 -39.00 10.94 21.87 0.24 -38.76 16 23 Si 0.99 34.66 29.59 68.60 2.03 36.69 16 24 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 25 H -0.27 -8.82 7.11 99.48 0.71 -8.12 16 26 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 27 C -0.25 -12.01 9.73 22.47 0.22 -11.79 16 28 C -0.02 -0.90 9.52 22.26 0.21 -0.69 16 29 H 0.04 1.33 6.74 -2.39 -0.02 1.31 16 30 H 0.05 1.37 6.75 -2.38 -0.02 1.35 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 1.14 5.96 -2.39 -0.01 1.13 16 40 H 0.11 2.89 7.49 -2.39 -0.02 2.88 16 41 H 0.11 2.93 8.10 -2.39 -0.02 2.91 16 42 H 0.11 5.19 7.59 -2.91 -0.02 5.17 16 43 H 0.11 6.01 6.18 -2.91 -0.02 5.99 16 44 H 0.30 13.09 8.29 -92.71 -0.77 12.32 16 45 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 46 H 0.12 5.14 7.63 -2.91 -0.02 5.12 16 Total: -1.00 -66.31 373.54 5.52 -60.79 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.98 Total: 31.35 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.57 Total: -14.55 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -2.12 Total: -53.59 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: 0.05 Total: -60.70 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -66.31 5.52 -60.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.247 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds