Wall clock time and date at job start Tue Mar 31 2020 16:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47206 * 2 1 4 4 N 1.46506 * 109.47550 * 119.99693 * 2 1 3 5 5 C 1.45757 * 117.94663 * 120.01826 * 4 2 1 6 6 C 1.52916 * 110.48565 * 160.90997 * 5 4 2 7 7 C 1.53361 * 108.66369 * 50.76551 * 6 5 4 8 8 C 1.53069 * 108.42675 * 292.45772 * 7 6 5 9 9 H 1.09004 * 109.33340 * 288.81591 * 8 7 6 10 10 O 1.45193 * 109.40090 * 169.02351 * 8 7 6 11 11 C 1.34780 * 116.99955 * 149.57375 * 10 8 7 12 12 O 1.21509 * 119.99674 * 359.97438 * 11 10 8 13 13 C 1.47503 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.40073 * 119.89893 * 179.97438 * 13 11 10 15 15 C 1.36298 * 120.10166 * 179.97438 * 14 13 11 16 16 C 1.40906 * 119.89667 * 0.02812 * 15 14 13 17 17 C 1.41086 * 120.09994 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99797 * 330.31507 * 17 16 15 19 19 C 1.40244 * 120.00296 * 150.03723 * 17 16 15 20 20 N 1.30635 * 120.00132 * 161.85265 * 19 17 16 21 21 Si 1.86806 * 119.99796 * 341.85328 * 19 17 16 22 22 H 1.48502 * 109.46921 * 95.39353 * 21 19 17 23 23 H 1.48499 * 109.46703 * 215.39371 * 21 19 17 24 24 H 1.48499 * 109.46957 * 335.39367 * 21 19 17 25 25 C 1.40902 * 119.80484 * 0.27271 * 16 15 14 26 26 C 1.36304 * 119.89021 * 359.39458 * 25 16 15 27 27 C 1.33354 * 117.94346 * 300.00664 * 4 2 1 28 28 O 1.21280 * 118.24988 * 2.23943 * 27 4 2 29 29 H 1.08997 * 109.47404 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47034 * 60.00357 * 1 2 3 31 31 H 1.08999 * 109.46708 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47738 * 239.99639 * 2 1 3 33 33 H 1.09001 * 109.46833 * 299.99766 * 3 2 1 34 34 H 1.08997 * 109.46894 * 59.99742 * 3 2 1 35 35 H 1.09004 * 109.47083 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.29726 * 281.21963 * 5 4 2 37 37 H 1.08998 * 109.29751 * 40.59534 * 5 4 2 38 38 H 1.08991 * 109.60544 * 170.51280 * 6 5 4 39 39 H 1.09002 * 109.60137 * 290.83616 * 6 5 4 40 40 H 1.09007 * 109.67615 * 172.72190 * 7 6 5 41 41 H 1.09000 * 109.66786 * 52.19010 * 7 6 5 42 42 H 1.07991 * 119.95095 * 0.02562 * 14 13 11 43 43 H 1.08002 * 120.05616 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99659 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.05426 * 179.72441 * 25 16 15 46 46 H 1.08004 * 119.94224 * 180.33694 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8534 -1.8707 1.0106 6 6 3.6419 -2.1742 2.2851 7 6 2.6689 -2.1981 3.4703 8 6 2.1400 -0.7786 3.6907 9 1 2.9367 -0.1558 4.0976 10 8 1.0314 -0.8171 4.6275 11 6 0.8516 0.2673 5.4075 12 8 1.6011 1.2185 5.3076 13 6 -0.2549 0.2993 6.3823 14 6 -0.4395 1.4271 7.1923 15 6 -1.4609 1.4613 8.0941 16 6 -2.3315 0.3596 8.2113 17 6 -3.3899 0.3902 9.1437 18 1 -3.2904 0.9613 10.0550 19 6 -4.5734 -0.3162 8.8845 20 7 -5.3983 -0.5890 9.8601 21 14 -4.9704 -0.8671 7.1442 22 1 -4.5201 -2.2694 6.9541 23 1 -6.4360 -0.7831 6.9207 24 1 -4.2704 0.0134 6.1746 25 6 -2.1382 -0.7753 7.3989 26 6 -1.1181 -0.7979 6.4951 27 6 1.6713 -0.1998 2.3866 28 8 0.9375 0.7653 2.4178 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 2.2213 -2.7244 0.7661 37 1 3.5488 -1.6944 0.1900 38 1 4.1283 -3.1451 2.1918 39 1 4.3947 -1.4017 2.4421 40 1 3.1891 -2.5390 4.3655 41 1 1.8386 -2.8689 3.2498 42 1 0.2280 2.2711 7.1016 43 1 -1.6023 2.3311 8.7185 44 1 -6.2167 -1.0779 9.6809 45 1 -2.8004 -1.6238 7.4885 46 1 -0.9725 -1.6652 5.8682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758695694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:14 Heat of formation + Delta-G solvation = -105.826203 kcal Electronic energy + Delta-G solvation = -28756.725527 eV Core-core repulsion = 24803.846125 eV Total energy + Delta-G solvation = -3952.879402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08331 -39.44442 -37.70260 -36.63824 -36.07877 -34.70410 -33.89074 -31.24374 -30.78708 -29.98333 -29.31738 -27.24826 -26.20932 -24.48618 -23.56600 -22.24104 -21.29106 -21.26280 -20.18633 -18.74860 -17.64506 -17.40627 -17.13770 -16.57737 -16.12722 -15.60210 -15.26685 -15.02615 -14.38109 -14.19123 -13.99042 -13.94514 -13.87221 -13.61021 -13.46289 -13.13715 -12.80720 -12.65983 -12.50732 -12.28578 -12.10072 -11.90942 -11.84789 -11.79459 -11.59525 -11.35740 -11.10654 -11.01506 -10.98983 -10.94535 -10.76017 -10.42066 -10.29020 -9.74988 -9.58448 -9.30779 -9.21410 -8.83429 -7.94814 -7.79932 -7.26139 -4.77239 1.88069 2.41622 2.69553 2.75001 2.95916 3.09372 3.19176 3.35900 3.51740 3.81876 4.27473 4.37316 4.43115 4.47235 4.54704 4.82995 4.95402 4.99179 5.05928 5.09951 5.20493 5.27885 5.38726 5.43147 5.55783 5.59090 5.64774 5.70951 5.73912 5.82497 5.91818 6.01095 6.03841 6.14654 6.29125 6.43932 6.52991 6.61502 6.71197 6.92771 6.94488 7.26234 7.33089 7.40517 7.58415 7.67328 7.89890 8.07564 8.15062 8.41635 8.51112 8.63854 9.72852 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.003061 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.740822 B = 9144.500026 C = 9494.289081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.141 3.859 3 C -0.171 4.171 4 N -0.602 5.602 5 C 0.112 3.888 6 C -0.132 4.132 7 C -0.120 4.120 8 C 0.079 3.921 9 H 0.111 0.889 10 O -0.339 6.339 11 C 0.520 3.480 12 O -0.535 6.535 13 C -0.269 4.269 14 C -0.013 4.013 15 C -0.222 4.222 16 C 0.109 3.891 17 C -0.418 4.418 18 H 0.098 0.902 19 C 0.082 3.918 20 N -0.781 5.781 21 Si 0.914 3.086 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.239 1.239 25 C -0.253 4.253 26 C -0.015 4.015 27 C 0.504 3.496 28 O -0.514 6.514 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.292 0.708 45 H 0.105 0.895 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.292 -6.281 -17.387 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 C -0.229 4.229 4 N -0.339 5.339 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.157 4.157 8 C 0.020 3.980 9 H 0.128 0.872 10 O -0.256 6.256 11 C 0.371 3.629 12 O -0.427 6.427 13 C -0.272 4.272 14 C -0.032 4.032 15 C -0.241 4.241 16 C 0.105 3.895 17 C -0.444 4.444 18 H 0.116 0.884 19 C -0.141 4.141 20 N -0.403 5.403 21 Si 0.740 3.260 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.162 1.162 25 C -0.272 4.272 26 C -0.034 4.034 27 C 0.291 3.709 28 O -0.389 6.389 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.123 0.877 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.880 -5.589 -17.207 22.208 hybrid contribution -0.177 -0.368 -0.729 0.836 sum 12.703 -5.957 -17.936 22.771 Atomic orbital electron populations 1.22252 0.94596 1.02170 1.04047 1.21052 0.95128 0.93470 0.86477 1.22220 1.00551 0.96179 1.03948 1.47497 1.51486 1.29035 1.05848 1.21457 0.93530 0.87667 0.98451 1.21864 0.97991 1.03706 0.93415 1.21750 0.99713 0.94725 0.99542 1.22305 0.90177 0.98584 0.86938 0.87186 1.86713 1.48477 1.43221 1.47204 1.21459 0.84027 0.79060 0.78314 1.90703 1.46916 1.35875 1.69158 1.18172 1.01945 1.00263 1.06803 1.20429 0.95148 0.94993 0.92601 1.20696 1.00357 0.98953 1.04083 1.17902 0.92029 0.90028 0.89520 1.19816 0.97001 1.23181 1.04365 0.88386 1.26398 0.95702 0.91817 1.00168 1.69599 1.09928 1.26440 1.34335 0.86238 0.76989 0.80705 0.82117 1.19048 1.21350 1.16204 1.20738 1.02583 0.99320 1.04569 1.20578 0.92777 0.95563 0.94486 1.20370 0.81214 0.84192 0.85131 1.90686 1.34937 1.26389 1.86931 0.89492 0.92044 0.92969 0.89934 0.91896 0.89863 0.93043 0.91503 0.90564 0.88813 0.90600 0.89554 0.89747 0.87399 0.87334 0.89682 0.87685 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.08 37.15 0.34 -1.71 16 2 C 0.14 1.48 3.21 -67.93 -0.22 1.27 16 3 C -0.17 -1.91 9.08 37.16 0.34 -1.57 16 4 N -0.60 -6.83 2.79 -167.37 -0.47 -7.30 16 5 C 0.11 0.80 6.25 -4.49 -0.03 0.77 16 6 C -0.13 -0.87 6.02 -26.59 -0.16 -1.03 16 7 C -0.12 -1.18 5.69 -26.51 -0.15 -1.33 16 8 C 0.08 1.19 2.70 -28.10 -0.08 1.11 16 9 H 0.11 1.72 7.15 -51.93 -0.37 1.34 16 10 O -0.34 -6.46 8.99 -46.49 -0.42 -6.88 16 11 C 0.52 11.52 7.35 34.51 0.25 11.78 16 12 O -0.53 -12.62 15.43 -19.32 -0.30 -12.91 16 13 C -0.27 -6.24 5.89 -104.75 -0.62 -6.85 16 14 C -0.01 -0.30 9.52 -39.59 -0.38 -0.68 16 15 C -0.22 -5.18 9.73 -39.27 -0.38 -5.56 16 16 C 0.11 2.69 5.10 -106.80 -0.54 2.15 16 17 C -0.42 -10.67 9.56 -37.75 -0.36 -11.03 16 18 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 19 C 0.08 2.03 5.40 -17.31 -0.09 1.94 16 20 N -0.78 -19.38 13.92 55.56 0.77 -18.61 16 21 Si 0.91 19.89 24.53 -169.99 -4.17 15.72 16 22 H -0.26 -5.54 6.71 56.52 0.38 -5.16 16 23 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.24 -5.49 6.87 56.52 0.39 -5.10 16 25 C -0.25 -5.99 7.11 -39.27 -0.28 -6.27 16 26 C -0.02 -0.35 9.55 -39.59 -0.38 -0.72 16 27 C 0.50 7.84 6.64 -11.87 -0.08 7.76 16 28 O -0.51 -10.10 11.61 -10.78 -0.13 -10.22 16 29 H 0.09 1.37 5.84 -51.93 -0.30 1.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.24 6.00 -51.93 -0.31 0.93 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.39 8.03 -51.93 -0.42 -0.03 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.11 2.35 7.63 -52.49 -0.40 1.95 16 43 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 45 H 0.11 2.41 4.77 -52.49 -0.25 2.16 16 46 H 0.11 2.13 7.59 -52.48 -0.40 1.73 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -30.79 368.30 -8.64 -39.44 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.68 Total: 5.20 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.82 Total: -9.99 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.31 Total: -25.91 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.84 Total: -30.01 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.79 -8.64 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758695694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.387 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds