Wall clock time and date at job start Tue Mar 31 2020 16:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47206 * 2 1 4 4 N 1.46506 * 109.47550 * 119.99693 * 2 1 3 5 5 C 1.45757 * 117.94663 * 120.01826 * 4 2 1 6 6 C 1.52916 * 110.48565 * 160.90997 * 5 4 2 7 7 C 1.53361 * 108.66369 * 50.76551 * 6 5 4 8 8 C 1.53069 * 108.42675 * 292.45772 * 7 6 5 9 9 H 1.09004 * 109.33340 * 288.81591 * 8 7 6 10 10 O 1.45193 * 109.40090 * 169.02351 * 8 7 6 11 11 C 1.34780 * 116.99955 * 149.57375 * 10 8 7 12 12 O 1.21509 * 119.99674 * 359.97438 * 11 10 8 13 13 C 1.47503 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.40073 * 119.89893 * 179.97438 * 13 11 10 15 15 C 1.36298 * 120.10166 * 179.97438 * 14 13 11 16 16 C 1.40906 * 119.89667 * 0.02812 * 15 14 13 17 17 C 1.41086 * 120.09994 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99797 * 330.31507 * 17 16 15 19 19 C 1.40244 * 120.00296 * 150.03723 * 17 16 15 20 20 N 1.30635 * 120.00132 * 161.85265 * 19 17 16 21 21 Si 1.86806 * 119.99796 * 341.85328 * 19 17 16 22 22 H 1.48502 * 109.46921 * 95.39353 * 21 19 17 23 23 H 1.48499 * 109.46703 * 215.39371 * 21 19 17 24 24 H 1.48499 * 109.46957 * 335.39367 * 21 19 17 25 25 C 1.40902 * 119.80484 * 0.27271 * 16 15 14 26 26 C 1.36304 * 119.89021 * 359.39458 * 25 16 15 27 27 C 1.33354 * 117.94346 * 300.00664 * 4 2 1 28 28 O 1.21280 * 118.24988 * 2.23943 * 27 4 2 29 29 H 1.08997 * 109.47404 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.47034 * 60.00357 * 1 2 3 31 31 H 1.08999 * 109.46708 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47738 * 239.99639 * 2 1 3 33 33 H 1.09001 * 109.46833 * 299.99766 * 3 2 1 34 34 H 1.08997 * 109.46894 * 59.99742 * 3 2 1 35 35 H 1.09004 * 109.47083 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.29726 * 281.21963 * 5 4 2 37 37 H 1.08998 * 109.29751 * 40.59534 * 5 4 2 38 38 H 1.08991 * 109.60544 * 170.51280 * 6 5 4 39 39 H 1.09002 * 109.60137 * 290.83616 * 6 5 4 40 40 H 1.09007 * 109.67615 * 172.72190 * 7 6 5 41 41 H 1.09000 * 109.66786 * 52.19010 * 7 6 5 42 42 H 1.07991 * 119.95095 * 0.02562 * 14 13 11 43 43 H 1.08002 * 120.05616 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99659 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.05426 * 179.72441 * 25 16 15 46 46 H 1.08004 * 119.94224 * 180.33694 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8534 -1.8707 1.0106 6 6 3.6419 -2.1742 2.2851 7 6 2.6689 -2.1981 3.4703 8 6 2.1400 -0.7786 3.6907 9 1 2.9367 -0.1558 4.0976 10 8 1.0314 -0.8171 4.6275 11 6 0.8516 0.2673 5.4075 12 8 1.6011 1.2185 5.3076 13 6 -0.2549 0.2993 6.3823 14 6 -0.4395 1.4271 7.1923 15 6 -1.4609 1.4613 8.0941 16 6 -2.3315 0.3596 8.2113 17 6 -3.3899 0.3902 9.1437 18 1 -3.2904 0.9613 10.0550 19 6 -4.5734 -0.3162 8.8845 20 7 -5.3983 -0.5890 9.8601 21 14 -4.9704 -0.8671 7.1442 22 1 -4.5201 -2.2694 6.9541 23 1 -6.4360 -0.7831 6.9207 24 1 -4.2704 0.0134 6.1746 25 6 -2.1382 -0.7753 7.3989 26 6 -1.1181 -0.7979 6.4951 27 6 1.6713 -0.1998 2.3866 28 8 0.9375 0.7653 2.4178 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 2.2213 -2.7244 0.7661 37 1 3.5488 -1.6944 0.1900 38 1 4.1283 -3.1451 2.1918 39 1 4.3947 -1.4017 2.4421 40 1 3.1891 -2.5390 4.3655 41 1 1.8386 -2.8689 3.2498 42 1 0.2280 2.2711 7.1016 43 1 -1.6023 2.3311 8.7185 44 1 -6.2167 -1.0779 9.6809 45 1 -2.8004 -1.6238 7.4885 46 1 -0.9725 -1.6652 5.8682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758695694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:13 Heat of formation + Delta-G solvation = -122.596103 kcal Electronic energy + Delta-G solvation = -28757.452724 eV Core-core repulsion = 24803.846125 eV Total energy + Delta-G solvation = -3953.606600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22734 -40.97054 -39.47633 -37.67541 -37.50914 -35.81339 -35.72556 -32.77639 -32.01254 -31.78715 -30.30661 -28.15224 -27.97832 -25.48997 -24.60956 -23.82418 -23.11591 -22.12673 -21.84598 -19.76810 -19.54516 -18.91189 -18.39807 -17.93849 -17.34012 -17.02733 -16.52286 -16.22972 -15.80534 -15.60917 -15.40580 -15.34393 -14.96115 -14.81913 -14.58669 -14.45621 -14.35771 -14.14043 -13.94090 -13.70093 -13.35009 -13.06494 -12.92186 -12.81383 -12.72330 -12.66790 -12.48804 -12.30912 -12.25779 -12.18765 -12.07061 -11.85137 -11.74037 -11.60996 -11.34487 -11.10098 -10.36723 -9.79583 -9.73145 -9.68865 -9.12137 -6.71310 0.05251 0.84427 1.17999 1.22343 1.33640 1.44415 1.67434 1.86936 2.05672 2.07366 2.55182 3.33929 3.39509 3.58689 3.66710 3.85898 3.97995 3.99137 4.08443 4.13360 4.23499 4.26787 4.31325 4.44620 4.57832 4.60359 4.70517 4.74018 4.78496 4.80448 4.84797 4.88787 4.90205 4.97082 5.00954 5.08623 5.18218 5.25125 5.32400 5.37191 5.42310 5.56117 5.64381 5.72471 5.76387 6.01476 6.16647 6.39003 6.51313 6.60468 6.90940 7.09271 7.92801 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.003061 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.740822 B = 9144.500026 C = 9494.289081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 C -0.167 4.167 4 N -0.592 5.592 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.113 4.113 8 C 0.068 3.932 9 H 0.098 0.902 10 O -0.341 6.341 11 C 0.524 3.476 12 O -0.556 6.556 13 C -0.279 4.279 14 C -0.018 4.018 15 C -0.229 4.229 16 C 0.098 3.902 17 C -0.448 4.448 18 H 0.075 0.925 19 C 0.057 3.943 20 N -0.809 5.809 21 Si 0.959 3.041 22 H -0.247 1.247 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.261 4.261 26 C -0.012 4.012 27 C 0.494 3.506 28 O -0.568 6.568 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.305 0.695 45 H 0.114 0.886 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.012 -9.001 -20.685 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 C -0.225 4.225 4 N -0.326 5.326 5 C -0.021 4.021 6 C -0.161 4.161 7 C -0.151 4.151 8 C 0.010 3.990 9 H 0.116 0.884 10 O -0.257 6.257 11 C 0.375 3.625 12 O -0.449 6.449 13 C -0.281 4.281 14 C -0.037 4.037 15 C -0.248 4.248 16 C 0.095 3.905 17 C -0.475 4.475 18 H 0.093 0.907 19 C -0.164 4.164 20 N -0.432 5.432 21 Si 0.781 3.219 22 H -0.171 1.171 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.280 4.280 26 C -0.030 4.030 27 C 0.281 3.719 28 O -0.447 6.447 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.131 0.869 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.624 -8.367 -20.525 26.554 hybrid contribution -0.540 0.502 0.176 0.758 sum 14.084 -7.865 -20.349 25.967 Atomic orbital electron populations 1.22192 0.95927 1.02006 1.02660 1.21267 0.94179 0.93515 0.87504 1.22157 1.01128 0.96647 1.02572 1.47625 1.50702 1.29595 1.04647 1.21906 0.94004 0.86367 0.99836 1.21930 0.96982 1.05880 0.91345 1.21869 1.00539 0.90858 1.01823 1.22831 0.88339 1.02005 0.85863 0.88431 1.86645 1.50212 1.41448 1.47440 1.21275 0.83401 0.79457 0.78389 1.90682 1.47613 1.36795 1.69835 1.18514 1.02375 1.00427 1.06810 1.20582 0.95162 0.95478 0.92470 1.20869 1.00352 0.99226 1.04381 1.18068 0.91988 0.90747 0.89716 1.19793 0.98486 1.24788 1.04388 0.90676 1.26920 0.95123 0.91610 1.02744 1.69587 1.10749 1.27266 1.35605 0.85579 0.77616 0.80736 0.77983 1.17127 1.19430 1.18484 1.20869 1.03160 0.99228 1.04724 1.20799 0.91901 0.96125 0.94223 1.20528 0.81077 0.83817 0.86503 1.90686 1.37552 1.28690 1.87805 0.94024 0.90267 0.92427 0.85396 0.90151 0.94331 0.91936 0.89590 0.87224 0.84935 0.90638 0.88434 0.89411 0.86650 0.86346 0.88408 0.86863 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.08 71.98 0.65 -3.18 16 2 C 0.14 2.52 3.21 44.99 0.14 2.67 16 3 C -0.17 -3.53 9.08 71.98 0.65 -2.87 16 4 N -0.59 -11.94 2.79 -802.62 -2.24 -14.18 16 5 C 0.10 0.94 6.25 86.49 0.54 1.48 16 6 C -0.12 -1.08 6.02 30.69 0.18 -0.90 16 7 C -0.11 -1.91 5.69 30.74 0.17 -1.74 16 8 C 0.07 2.00 2.70 29.71 0.08 2.08 16 9 H 0.10 3.08 7.15 -2.38 -0.02 3.06 16 10 O -0.34 -12.93 8.99 -51.39 -0.46 -13.39 16 11 C 0.52 23.48 7.35 70.26 0.52 24.00 16 12 O -0.56 -26.89 15.43 19.86 0.31 -26.58 16 13 C -0.28 -13.00 5.89 -19.95 -0.12 -13.12 16 14 C -0.02 -0.86 9.52 22.26 0.21 -0.65 16 15 C -0.23 -10.98 9.73 22.47 0.22 -10.76 16 16 C 0.10 4.95 5.10 -21.28 -0.11 4.84 16 17 C -0.45 -23.65 9.56 23.46 0.22 -23.42 16 18 H 0.08 4.18 8.06 -2.91 -0.02 4.15 16 19 C 0.06 2.83 5.40 85.36 0.46 3.29 16 20 N -0.81 -40.53 13.92 21.87 0.30 -40.23 16 21 Si 0.96 40.39 24.53 68.60 1.68 42.07 16 22 H -0.25 -9.62 6.71 99.48 0.67 -8.95 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.26 -11.86 6.87 99.48 0.68 -11.17 16 25 C -0.26 -12.30 7.11 22.47 0.16 -12.14 16 26 C -0.01 -0.54 9.55 22.26 0.21 -0.32 16 27 C 0.49 15.19 6.64 87.71 0.58 15.77 16 28 O -0.57 -23.21 11.61 12.59 0.15 -23.06 16 29 H 0.04 1.35 5.84 -2.39 -0.01 1.33 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 1.26 7.79 -2.39 -0.02 1.25 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.18 6.00 -2.39 -0.01 1.17 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.42 8.03 -2.39 -0.02 0.40 16 38 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.07 0.72 8.13 -2.39 -0.02 0.70 16 40 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.09 1.45 8.13 -2.39 -0.02 1.43 16 42 H 0.12 5.15 7.63 -2.92 -0.02 5.13 16 43 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 44 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 45 H 0.11 5.09 4.77 -2.91 -0.01 5.08 16 46 H 0.13 5.07 7.59 -2.91 -0.02 5.05 16 Total: -1.00 -71.66 368.30 5.46 -66.20 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.93 Total: 24.13 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.79 Total: -14.96 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.93 Total: -54.41 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -0.01 Total: -63.03 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.68 Total: 42.07 kcal Total: -71.66 5.46 -66.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758695694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.396 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds