Wall clock time and date at job start Tue Mar 31 2020 17:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08988 * 109.62668 * 2 1 4 4 C 1.53237 * 109.62423 * 239.61728 * 2 1 3 5 5 C 1.53371 * 109.18472 * 294.74080 * 4 2 1 6 6 H 1.09000 * 109.37981 * 56.64770 * 5 4 2 7 7 C 1.50703 * 109.29423 * 176.41383 * 5 4 2 8 8 O 1.21271 * 120.00140 * 0.39476 * 7 5 4 9 9 N 1.34777 * 119.99781 * 180.39832 * 7 5 4 10 10 C 1.46503 * 119.99985 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.92919 * 269.72324 * 11 10 9 13 13 C 1.38105 * 120.06273 * 179.72782 * 12 11 10 14 14 C 1.38874 * 119.93280 * 0.52601 * 13 12 11 15 15 O 1.35749 * 120.06946 * 179.72688 * 14 13 12 16 16 C 1.34826 * 117.00256 * 174.48904 * 15 14 13 17 17 H 1.08000 * 120.00117 * 5.05710 * 16 15 14 18 18 C 1.38653 * 120.00609 * 185.05629 * 16 15 14 19 19 N 1.31553 * 120.00521 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99399 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47293 * 90.00372 * 20 18 16 22 22 H 1.48507 * 109.47160 * 209.99923 * 20 18 16 23 23 H 1.48502 * 109.47413 * 329.99962 * 20 18 16 24 24 C 1.38874 * 119.86260 * 359.74971 * 14 13 12 25 25 C 1.38098 * 119.93392 * 359.97438 * 24 14 13 26 26 C 1.52962 * 109.91433 * 296.50102 * 5 4 2 27 27 C 1.53234 * 109.39952 * 63.61421 * 26 5 4 28 28 C 1.51271 * 108.53897 * 305.37371 * 27 26 5 29 29 O 1.20754 * 120.84888 * 231.32331 * 28 27 26 30 30 H 1.08997 * 109.47002 * 299.99684 * 1 2 3 31 31 H 1.08998 * 109.47302 * 59.99734 * 1 2 3 32 32 H 1.09007 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47856 * 54.89502 * 4 2 1 34 34 H 1.09000 * 109.48064 * 174.93059 * 4 2 1 35 35 H 0.97002 * 120.00362 * 359.97438 * 9 7 5 36 36 H 1.09003 * 109.46836 * 299.99706 * 10 9 7 37 37 H 1.08995 * 109.46931 * 59.99921 * 10 9 7 38 38 H 1.07995 * 119.96424 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.02841 * 180.27198 * 13 12 11 40 40 H 0.97003 * 119.99911 * 179.97438 * 19 18 16 41 41 H 1.08007 * 120.03759 * 179.97438 * 24 14 13 42 42 H 1.07999 * 119.97123 * 179.97438 * 25 24 14 43 43 H 1.09000 * 109.48169 * 303.63871 * 26 5 4 44 44 H 1.08997 * 109.49445 * 183.59774 * 26 5 4 45 45 H 1.08999 * 109.62503 * 185.66143 * 27 26 5 46 46 H 1.09005 * 109.78365 * 65.18010 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0266 0.0000 4 6 2.0446 -0.7300 -1.2451 5 6 1.6429 -2.2080 -1.1649 6 1 0.5608 -2.2834 -1.0572 7 6 2.0705 -2.9095 -2.4283 8 8 2.6447 -2.2923 -3.3000 9 7 1.8147 -4.2230 -2.5894 10 6 2.2309 -4.9051 -3.8173 11 6 1.8297 -6.3560 -3.7465 12 6 2.7019 -7.2880 -3.2141 13 6 2.3348 -8.6174 -3.1428 14 6 1.0929 -9.0198 -3.6164 15 8 0.7315 -10.3268 -3.5527 16 6 -0.5284 -10.6322 -3.9232 17 1 -1.1728 -9.8663 -4.3287 18 6 -0.9969 -11.9297 -3.7836 19 7 -2.2263 -12.2277 -4.1446 20 14 0.1179 -13.2548 -3.0828 21 1 -0.0388 -13.3040 -1.6069 22 1 -0.2514 -14.5706 -3.6639 23 1 1.5301 -12.9433 -3.4206 24 6 0.2216 -8.0824 -4.1557 25 6 0.5921 -6.7536 -4.2190 26 6 2.3207 -2.8677 0.0372 27 6 1.8164 -2.2138 1.3280 28 6 2.0381 -0.7206 1.2291 29 8 2.6057 -0.1193 2.1091 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6100 -0.2783 -2.1369 34 1 3.1308 -0.6510 -1.2899 35 1 1.3556 -4.7168 -1.8920 36 1 1.7487 -4.4358 -4.6749 37 1 3.3131 -4.8326 -3.9242 38 1 3.6693 -6.9751 -2.8501 39 1 3.0146 -9.3440 -2.7228 40 1 -2.5539 -13.1355 -4.0473 41 1 -0.7448 -8.3923 -4.5252 42 1 -0.0848 -6.0242 -4.6387 43 1 3.4004 -2.7383 -0.0381 44 1 2.0820 -3.9311 0.0511 45 1 2.3694 -2.6103 2.1795 46 1 0.7533 -2.4184 1.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764106094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:05 Heat of formation + Delta-G solvation = -97.527988 kcal Electronic energy + Delta-G solvation = -27287.588145 eV Core-core repulsion = 23335.068581 eV Total energy + Delta-G solvation = -3952.519565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91945 -39.68517 -39.21112 -37.22499 -36.64266 -34.61072 -33.03834 -32.50812 -30.69979 -30.41413 -29.72422 -26.83969 -25.95938 -24.64453 -23.29375 -22.78063 -22.23650 -20.68180 -20.39345 -18.84060 -18.05418 -17.80151 -17.32022 -16.46695 -15.97312 -15.75071 -15.43189 -15.07708 -15.02487 -14.76823 -14.31821 -14.24494 -14.05877 -13.92772 -13.69983 -13.40669 -13.31634 -13.04789 -12.85948 -12.76914 -12.50691 -12.31916 -12.28810 -12.01856 -11.96224 -11.56383 -11.50604 -11.35502 -11.03345 -10.90520 -10.88852 -10.82203 -10.26647 -9.89586 -9.71194 -9.53338 -9.08729 -8.99333 -8.43828 -7.53372 -6.54204 -4.21330 1.55577 1.89324 1.96970 2.51089 3.12626 3.17127 3.22260 3.31598 3.64121 4.07978 4.12834 4.21853 4.30357 4.42501 4.47465 4.61509 4.69758 4.74435 4.88077 4.91835 4.96326 4.97692 5.07099 5.14898 5.28307 5.30344 5.34936 5.46455 5.50135 5.51394 5.55627 5.62213 5.66621 5.80814 5.84205 5.86476 5.97680 6.19027 6.37279 6.41457 6.62138 6.84413 7.06713 7.08570 7.13226 7.43851 7.47255 7.65932 7.89670 8.12891 8.80263 9.40586 10.52842 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002098 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.748824 B =13343.663543 C =13756.015540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 H 0.097 0.903 4 C -0.089 4.089 5 C -0.116 4.116 6 H 0.106 0.894 7 C 0.515 3.485 8 O -0.544 6.544 9 N -0.721 5.721 10 C 0.177 3.823 11 C -0.207 4.207 12 C -0.056 4.056 13 C -0.195 4.195 14 C 0.167 3.833 15 O -0.212 6.212 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.874 5.874 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.224 4.224 25 C -0.052 4.052 26 C -0.106 4.106 27 C -0.169 4.169 28 C 0.366 3.634 29 O -0.457 6.457 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.281 0.719 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 19.311 7.818 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 H 0.116 0.884 4 C -0.127 4.127 5 C -0.137 4.137 6 H 0.124 0.876 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.372 5.372 10 C 0.055 3.945 11 C -0.209 4.209 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.113 3.887 15 O -0.116 6.116 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.511 5.511 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.071 4.071 26 C -0.144 4.144 27 C -0.206 4.206 28 C 0.241 3.759 29 O -0.330 6.330 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.117 19.663 7.677 21.977 hybrid contribution -0.155 -1.033 0.428 1.129 sum 5.962 18.630 8.105 21.174 Atomic orbital electron populations 1.21809 0.92427 1.02964 1.03010 1.21982 0.98179 1.01113 0.94715 0.88449 1.21470 1.02215 0.92329 0.96703 1.21545 1.02781 0.96144 0.93225 0.87611 1.20495 0.79039 0.82135 0.88297 1.90699 1.41853 1.65696 1.43928 1.46358 1.60092 1.09411 1.21363 1.20005 0.99478 0.88762 0.86281 1.19274 0.96915 0.93775 1.10897 1.20532 0.97971 0.91952 0.97050 1.20217 0.96415 0.96070 1.08738 1.19183 0.92997 0.84039 0.92443 1.83574 1.32217 1.20399 1.75432 1.20782 0.85781 0.97584 1.42600 0.87485 1.24491 0.95883 0.97421 0.96137 1.69639 1.14870 1.21458 1.45175 0.86177 0.81510 0.79755 0.79451 1.19787 1.20655 1.18317 1.21281 1.02250 0.93021 1.07764 1.20698 0.94722 0.95182 0.96503 1.21513 1.01160 1.00314 0.91383 1.22308 1.04389 0.94049 0.99903 1.24929 0.73930 0.91292 0.85707 1.90414 1.32100 1.70612 1.39855 0.92147 0.91003 0.91546 0.89563 0.90660 0.76338 0.91425 0.91462 0.86793 0.86371 0.90864 0.84792 0.87114 0.90638 0.89716 0.88811 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.89 37.16 0.33 -0.40 16 2 C -0.14 -0.94 3.16 -91.37 -0.29 -1.23 16 3 H 0.10 0.67 8.14 -51.94 -0.42 0.25 16 4 C -0.09 -0.67 4.04 -26.42 -0.11 -0.77 16 5 C -0.12 -0.82 2.27 -91.60 -0.21 -1.03 16 6 H 0.11 0.56 6.41 -51.93 -0.33 0.23 16 7 C 0.51 5.44 7.15 -10.98 -0.08 5.36 16 8 O -0.54 -7.84 15.94 5.57 0.09 -7.75 16 9 N -0.72 -7.34 5.42 -61.47 -0.33 -7.68 16 10 C 0.18 2.16 5.80 -5.19 -0.03 2.13 16 11 C -0.21 -2.94 5.25 -104.57 -0.55 -3.49 16 12 C -0.06 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.20 -3.47 9.99 -39.39 -0.39 -3.86 16 14 C 0.17 3.53 6.65 -39.11 -0.26 3.27 16 15 O -0.21 -5.26 8.59 0.07 0.00 -5.26 16 16 C -0.39 -10.48 9.95 30.89 0.31 -10.17 16 17 H 0.11 2.91 5.44 -52.49 -0.29 2.63 16 18 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 19 N -0.87 -24.25 13.96 55.48 0.77 -23.48 16 20 Si 0.91 20.70 28.62 -169.99 -4.86 15.84 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.26 -5.95 7.11 56.52 0.40 -5.54 16 24 C -0.22 -4.37 9.17 -39.40 -0.36 -4.73 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C -0.11 -0.65 5.15 -26.63 -0.14 -0.79 16 27 C -0.17 -1.00 5.89 -27.48 -0.16 -1.16 16 28 C 0.37 3.02 6.07 -28.47 -0.17 2.85 16 29 O -0.46 -5.49 17.89 6.00 0.11 -5.39 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.27 5.98 -51.93 -0.31 -0.04 16 33 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.47 7.83 -40.82 -0.32 3.15 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.44 7.46 -51.93 -0.39 0.05 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.43 7.81 -51.93 -0.41 0.02 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -31.20 378.09 -8.03 -39.23 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.53 Total: 3.59 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.97 Total: -14.81 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.44 Total: -31.15 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.20 Total: -18.40 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.86 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.20 -8.03 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764106094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.295 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds