Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08988 * 109.62668 * 2 1 4 4 C 1.53237 * 109.62423 * 239.61728 * 2 1 3 5 5 C 1.53371 * 109.18472 * 294.74080 * 4 2 1 6 6 H 1.09000 * 109.37981 * 56.64770 * 5 4 2 7 7 C 1.50703 * 109.29423 * 176.41383 * 5 4 2 8 8 O 1.21271 * 120.00140 * 0.39476 * 7 5 4 9 9 N 1.34777 * 119.99781 * 180.39832 * 7 5 4 10 10 C 1.46503 * 119.99985 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.92919 * 269.72324 * 11 10 9 13 13 C 1.38105 * 120.06273 * 179.72782 * 12 11 10 14 14 C 1.38874 * 119.93280 * 0.52601 * 13 12 11 15 15 O 1.35749 * 120.06946 * 179.72688 * 14 13 12 16 16 C 1.34826 * 117.00256 * 174.48904 * 15 14 13 17 17 H 1.08000 * 120.00117 * 5.05710 * 16 15 14 18 18 C 1.38653 * 120.00609 * 185.05629 * 16 15 14 19 19 N 1.31553 * 120.00521 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99399 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47293 * 90.00372 * 20 18 16 22 22 H 1.48507 * 109.47160 * 209.99923 * 20 18 16 23 23 H 1.48502 * 109.47413 * 329.99962 * 20 18 16 24 24 C 1.38874 * 119.86260 * 359.74971 * 14 13 12 25 25 C 1.38098 * 119.93392 * 359.97438 * 24 14 13 26 26 C 1.52962 * 109.91433 * 296.50102 * 5 4 2 27 27 C 1.53234 * 109.39952 * 63.61421 * 26 5 4 28 28 C 1.51271 * 108.53897 * 305.37371 * 27 26 5 29 29 O 1.20754 * 120.84888 * 231.32331 * 28 27 26 30 30 H 1.08997 * 109.47002 * 299.99684 * 1 2 3 31 31 H 1.08998 * 109.47302 * 59.99734 * 1 2 3 32 32 H 1.09007 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47856 * 54.89502 * 4 2 1 34 34 H 1.09000 * 109.48064 * 174.93059 * 4 2 1 35 35 H 0.97002 * 120.00362 * 359.97438 * 9 7 5 36 36 H 1.09003 * 109.46836 * 299.99706 * 10 9 7 37 37 H 1.08995 * 109.46931 * 59.99921 * 10 9 7 38 38 H 1.07995 * 119.96424 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.02841 * 180.27198 * 13 12 11 40 40 H 0.97003 * 119.99911 * 179.97438 * 19 18 16 41 41 H 1.08007 * 120.03759 * 179.97438 * 24 14 13 42 42 H 1.07999 * 119.97123 * 179.97438 * 25 24 14 43 43 H 1.09000 * 109.48169 * 303.63871 * 26 5 4 44 44 H 1.08997 * 109.49445 * 183.59774 * 26 5 4 45 45 H 1.08999 * 109.62503 * 185.66143 * 27 26 5 46 46 H 1.09005 * 109.78365 * 65.18010 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0266 0.0000 4 6 2.0446 -0.7300 -1.2451 5 6 1.6429 -2.2080 -1.1649 6 1 0.5608 -2.2834 -1.0572 7 6 2.0705 -2.9095 -2.4283 8 8 2.6447 -2.2923 -3.3000 9 7 1.8147 -4.2230 -2.5894 10 6 2.2309 -4.9051 -3.8173 11 6 1.8297 -6.3560 -3.7465 12 6 2.7019 -7.2880 -3.2141 13 6 2.3348 -8.6174 -3.1428 14 6 1.0929 -9.0198 -3.6164 15 8 0.7315 -10.3268 -3.5527 16 6 -0.5284 -10.6322 -3.9232 17 1 -1.1728 -9.8663 -4.3287 18 6 -0.9969 -11.9297 -3.7836 19 7 -2.2263 -12.2277 -4.1446 20 14 0.1179 -13.2548 -3.0828 21 1 -0.0388 -13.3040 -1.6069 22 1 -0.2514 -14.5706 -3.6639 23 1 1.5301 -12.9433 -3.4206 24 6 0.2216 -8.0824 -4.1557 25 6 0.5921 -6.7536 -4.2190 26 6 2.3207 -2.8677 0.0372 27 6 1.8164 -2.2138 1.3280 28 6 2.0381 -0.7206 1.2291 29 8 2.6057 -0.1193 2.1091 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6100 -0.2783 -2.1369 34 1 3.1308 -0.6510 -1.2899 35 1 1.3556 -4.7168 -1.8920 36 1 1.7487 -4.4358 -4.6749 37 1 3.3131 -4.8326 -3.9242 38 1 3.6693 -6.9751 -2.8501 39 1 3.0146 -9.3440 -2.7228 40 1 -2.5539 -13.1355 -4.0473 41 1 -0.7448 -8.3923 -4.5252 42 1 -0.0848 -6.0242 -4.6387 43 1 3.4004 -2.7383 -0.0381 44 1 2.0820 -3.9311 0.0511 45 1 2.3694 -2.6103 2.1795 46 1 0.7533 -2.4184 1.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764106094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = -116.618091 kcal Electronic energy + Delta-G solvation = -27288.415954 eV Core-core repulsion = 23335.068581 eV Total energy + Delta-G solvation = -3953.347374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63422 -40.95538 -40.31774 -38.63356 -37.42986 -35.67700 -34.44127 -33.56484 -31.87917 -31.66026 -30.61279 -27.88664 -27.11262 -25.96325 -23.86320 -23.70688 -23.48833 -22.04471 -21.21768 -19.83543 -19.42311 -19.13822 -18.46400 -17.24472 -16.83422 -16.74089 -16.38915 -16.16048 -16.12877 -15.71753 -15.66578 -15.54005 -15.36225 -14.91870 -14.72869 -14.41416 -14.33965 -14.20730 -14.05162 -13.79101 -13.53534 -13.31878 -13.09603 -13.03943 -12.78335 -12.57850 -12.51021 -12.45805 -12.31480 -12.07298 -11.94088 -11.89230 -11.44252 -11.28697 -10.94647 -10.75487 -10.33615 -10.02145 -9.81416 -9.07263 -8.49980 -6.22752 0.51297 0.56554 0.91908 1.33461 1.36243 1.52845 1.68645 2.28055 2.29762 2.80684 3.06057 3.08767 3.16225 3.51011 3.65900 3.76230 3.88843 3.94190 4.03479 4.12744 4.16102 4.20573 4.31980 4.41570 4.46054 4.50816 4.56446 4.61368 4.77205 4.84703 4.86144 4.89919 4.96630 4.97869 5.03169 5.10482 5.14728 5.24232 5.26302 5.35465 5.40934 5.48567 5.56070 5.72797 5.80516 5.89809 6.20908 6.46448 6.63748 6.84472 7.30526 7.57949 8.61202 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002098 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.748824 B =13343.663543 C =13756.015540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 H 0.089 0.911 4 C -0.085 4.085 5 C -0.107 4.107 6 H 0.134 0.866 7 C 0.517 3.483 8 O -0.583 6.583 9 N -0.714 5.714 10 C 0.181 3.819 11 C -0.172 4.172 12 C -0.045 4.045 13 C -0.192 4.192 14 C 0.128 3.872 15 O -0.243 6.243 16 C -0.398 4.398 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.238 4.238 25 C -0.049 4.049 26 C -0.101 4.101 27 C -0.164 4.164 28 C 0.366 3.634 29 O -0.502 6.502 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.413 0.587 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 20.639 8.947 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 H 0.108 0.892 4 C -0.123 4.123 5 C -0.128 4.128 6 H 0.151 0.849 7 C 0.305 3.695 8 O -0.464 6.464 9 N -0.365 5.365 10 C 0.058 3.942 11 C -0.173 4.173 12 C -0.063 4.063 13 C -0.211 4.211 14 C 0.079 3.921 15 O -0.150 6.150 16 C -0.474 4.474 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.257 4.257 25 C -0.068 4.068 26 C -0.139 4.139 27 C -0.201 4.201 28 C 0.245 3.755 29 O -0.379 6.379 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.250 0.750 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.370 21.023 8.815 23.958 hybrid contribution -0.383 -1.023 0.038 1.093 sum 6.987 20.000 8.852 22.960 Atomic orbital electron populations 1.21842 0.90695 1.04137 1.03434 1.21938 0.99487 1.00458 0.93604 0.89240 1.21400 1.01158 0.92943 0.96825 1.21557 1.04395 0.95155 0.91721 0.84879 1.20988 0.77976 0.81821 0.88749 1.90697 1.43625 1.66475 1.45557 1.46174 1.59998 1.09457 1.20906 1.19895 0.99956 0.87008 0.87319 1.19544 0.95433 0.95066 1.07272 1.20943 0.99389 0.90429 0.95569 1.20517 0.95044 0.97748 1.07831 1.19750 0.94786 0.83383 0.94229 1.83523 1.31037 1.22460 1.77994 1.20702 0.86719 0.97413 1.42615 0.89877 1.25272 0.97243 0.99474 0.96833 1.69725 1.16530 1.22158 1.47800 0.85236 0.79229 0.77357 0.79029 1.18956 1.19530 1.18665 1.21269 1.01370 0.94653 1.08430 1.20921 0.95919 0.93875 0.96079 1.21503 1.00443 1.01217 0.90747 1.22327 1.06099 0.91928 0.99756 1.25448 0.72322 0.92528 0.85228 1.90407 1.34219 1.71715 1.41509 0.92092 0.90316 0.89966 0.89931 0.92377 0.75020 0.91426 0.90768 0.82899 0.85271 0.90578 0.87348 0.84741 0.91732 0.87892 0.88792 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.89 71.98 0.64 -0.40 16 2 C -0.14 -1.57 3.16 -11.28 -0.04 -1.61 16 3 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.09 -1.11 4.04 30.80 0.12 -0.99 16 5 C -0.11 -1.15 2.27 -11.43 -0.03 -1.17 16 6 H 0.13 0.76 6.41 -2.39 -0.02 0.75 16 7 C 0.52 9.18 7.15 87.66 0.63 9.80 16 8 O -0.58 -15.41 15.94 -3.00 -0.05 -15.46 16 9 N -0.71 -11.45 5.42 -466.78 -2.53 -13.98 16 10 C 0.18 3.63 5.80 85.63 0.50 4.13 16 11 C -0.17 -4.20 5.25 -19.83 -0.10 -4.30 16 12 C -0.04 -1.13 9.69 22.25 0.22 -0.92 16 13 C -0.19 -6.41 9.99 22.39 0.22 -6.19 16 14 C 0.13 5.44 6.65 22.57 0.15 5.59 16 15 O -0.24 -12.41 8.59 -22.68 -0.19 -12.60 16 16 C -0.40 -22.35 9.95 67.92 0.68 -21.67 16 17 H 0.08 4.88 5.44 -2.91 -0.02 4.86 16 18 C 0.01 0.58 5.49 84.83 0.47 1.05 16 19 N -0.92 -53.33 13.96 21.61 0.30 -53.03 16 20 Si 0.97 43.62 28.62 68.60 1.96 45.58 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 24 C -0.24 -9.37 9.17 22.39 0.21 -9.17 16 25 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 26 C -0.10 -0.88 5.15 30.66 0.16 -0.72 16 27 C -0.16 -1.43 5.89 30.11 0.18 -1.25 16 28 C 0.37 5.45 6.07 29.47 0.18 5.63 16 29 O -0.50 -11.87 17.89 -1.43 -0.03 -11.90 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.33 5.98 -2.38 -0.01 0.32 16 33 H 0.08 1.16 8.01 -2.39 -0.02 1.14 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 5.06 7.83 -92.71 -0.73 4.33 16 36 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.11 4.81 5.64 -2.91 -0.02 4.80 16 42 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.10 0.58 7.46 -2.39 -0.02 0.56 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.13 0.48 7.81 -2.38 -0.02 0.46 16 Total: -1.00 -72.36 378.09 4.14 -68.22 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.28 Total: 16.59 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.39 Total: -23.43 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -2.23 Total: -67.01 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.27 Total: -39.96 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.96 Total: 45.58 kcal Total: -72.36 4.14 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764106094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.396 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds