Wall clock time and date at job start Tue Mar 31 2020 17:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99703 * 2 1 4 4 O 1.20824 * 120.00702 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99653 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.28898 * 302.13437 * 5 3 2 7 7 C 1.54620 * 110.32899 * 64.37685 * 5 3 2 8 8 C 1.54594 * 102.91240 * 140.59309 * 7 5 3 9 9 N 1.48123 * 103.42195 * 322.86871 * 8 7 5 10 10 C 1.34776 * 127.03254 * 219.28623 * 9 8 7 11 11 O 1.21277 * 120.00191 * 179.68249 * 10 9 8 12 12 C 1.50700 * 119.99956 * 359.68623 * 10 9 8 13 13 C 1.50698 * 109.47013 * 179.97438 * 12 10 9 14 14 C 1.37642 * 120.12793 * 264.97505 * 13 12 10 15 15 C 1.38614 * 120.24896 * 180.02562 * 14 13 12 16 16 C 1.38651 * 120.50098 * 359.97438 * 15 14 13 17 17 C 1.37603 * 120.25128 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12946 * 84.99862 * 13 12 10 19 19 C 1.41398 * 120.24082 * 359.97438 * 18 13 12 20 20 H 1.07995 * 120.00181 * 334.03599 * 19 18 13 21 21 C 1.39948 * 119.99873 * 154.03040 * 19 18 13 22 22 N 1.30820 * 120.00005 * 343.66140 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 163.65231 * 21 19 18 24 24 H 1.48499 * 109.47047 * 90.00307 * 23 21 19 25 25 H 1.48501 * 109.47319 * 210.00590 * 23 21 19 26 26 H 1.48508 * 109.47055 * 330.00527 * 23 21 19 27 27 C 1.47486 * 105.93342 * 39.02668 * 9 8 7 28 28 H 1.08993 * 109.91222 * 215.42300 * 27 9 8 29 29 C 1.52994 * 109.91472 * 94.13917 * 27 9 8 30 30 H 1.08997 * 109.47209 * 300.00685 * 1 2 3 31 31 H 1.09006 * 109.46976 * 59.99832 * 1 2 3 32 32 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 33 33 H 1.09001 * 110.73405 * 259.08238 * 7 5 3 34 34 H 1.08998 * 110.73704 * 22.22240 * 7 5 3 35 35 H 1.08998 * 110.61672 * 204.35900 * 8 7 5 36 36 H 1.08999 * 110.54371 * 81.34502 * 8 7 5 37 37 H 1.09001 * 109.47206 * 59.99892 * 12 10 9 38 38 H 1.09007 * 109.47004 * 299.99945 * 12 10 9 39 39 H 1.07995 * 119.87434 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.75006 * 180.02562 * 15 14 13 41 41 H 1.07997 * 119.87973 * 180.28190 * 16 15 14 42 42 H 1.07992 * 120.13040 * 179.97438 * 17 16 15 43 43 H 0.96996 * 120.00210 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.47114 * 61.45464 * 29 27 9 45 45 H 1.09004 * 109.47004 * 181.45464 * 29 27 9 46 46 H 1.09002 * 109.47347 * 301.45538 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9726 0.7514 0.8649 7 6 4.1350 0.6771 -1.3082 8 6 5.2981 1.6367 -1.6496 9 7 4.7768 2.9644 -1.2502 10 6 4.9493 4.1329 -1.8992 11 8 4.4577 5.1500 -1.4580 12 6 5.7531 4.1756 -3.1733 13 6 5.7930 5.5889 -3.6948 14 6 4.8844 6.0014 -4.6429 15 6 4.9191 7.3006 -5.1248 16 6 5.8668 8.1989 -4.6587 17 6 6.7850 7.8086 -3.7110 18 6 6.7595 6.4918 -3.2149 19 6 7.6979 6.0793 -2.2410 20 1 7.4564 5.2712 -1.5666 21 6 8.9398 6.7183 -2.1511 22 7 9.3666 7.4605 -3.1403 23 14 9.9878 6.5116 -0.6187 24 1 10.8825 5.3383 -0.7855 25 1 10.8065 7.7329 -0.4105 26 1 9.1073 6.2994 0.5582 27 6 4.0250 2.7450 -0.0004 28 1 3.1578 3.4044 0.0317 29 6 4.9296 3.0086 1.2050 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.5037 -0.3351 -1.1415 34 1 3.3824 0.6872 -2.0966 35 1 5.5137 1.6136 -2.7177 36 1 6.1862 1.3823 -1.0711 37 1 5.2900 3.5272 -3.9170 38 1 6.7684 3.8327 -2.9740 39 1 4.1416 5.3101 -5.0127 40 1 4.2020 7.6158 -5.8683 41 1 5.8819 9.2101 -5.0377 42 1 7.5225 8.5097 -3.3496 43 1 10.2272 7.9036 -3.0779 44 1 5.2632 4.0461 1.1889 45 1 4.3747 2.8195 2.1239 46 1 5.7955 2.3479 1.1609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787506183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:29 Heat of formation + Delta-G solvation = -101.217702 kcal Electronic energy + Delta-G solvation = -28847.043280 eV Core-core repulsion = 24894.363717 eV Total energy + Delta-G solvation = -3952.679563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06261 -39.55340 -37.89397 -36.87614 -36.43896 -33.57790 -32.31097 -31.49025 -31.00766 -29.40339 -28.39360 -26.81199 -26.46637 -24.98182 -22.83574 -22.53675 -20.89478 -20.61061 -19.58928 -18.65573 -17.84803 -17.14328 -17.08463 -16.70642 -16.10776 -15.82675 -15.41520 -14.66413 -14.41126 -14.24924 -13.92182 -13.76314 -13.49511 -13.43681 -13.03319 -12.94328 -12.75091 -12.54173 -12.37172 -12.25465 -11.91081 -11.71844 -11.58681 -11.48370 -11.18902 -11.10998 -11.06219 -11.01554 -10.92562 -10.88485 -10.65696 -10.46533 -10.36096 -9.43613 -9.33213 -9.13205 -9.09874 -8.39980 -7.26341 -7.24317 -6.69663 -4.29737 1.97741 2.38141 2.81563 2.98380 3.08862 3.14323 3.30722 3.34496 3.41396 3.96883 4.16543 4.29574 4.48552 4.70458 4.82729 4.89310 4.92396 5.02215 5.12105 5.23865 5.33793 5.42809 5.47310 5.53551 5.58063 5.70322 5.83118 5.85649 6.00328 6.06676 6.11734 6.24380 6.30433 6.33400 6.46493 6.55355 6.63082 6.85005 7.12924 7.34375 7.47064 7.51178 7.68826 7.92256 7.99472 8.12358 8.17947 8.36230 8.69229 8.87235 8.96257 9.06340 10.24655 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003553 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.731375 B = 7878.240283 C = 9116.971895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.495 6.495 5 C -0.093 4.093 6 H 0.123 0.877 7 C -0.120 4.120 8 C 0.100 3.900 9 N -0.630 5.630 10 C 0.536 3.464 11 O -0.513 6.513 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.239 4.239 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C 0.135 3.865 28 H 0.105 0.895 29 C -0.158 4.158 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 -17.611 5.877 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.381 6.381 5 C -0.113 4.113 6 H 0.141 0.859 7 C -0.158 4.158 8 C -0.024 4.024 9 N -0.368 5.368 10 C 0.327 3.673 11 O -0.385 6.385 12 C -0.103 4.103 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.258 4.258 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.421 5.421 23 Si 0.726 3.274 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 C 0.031 3.969 28 H 0.123 0.877 29 C -0.216 4.216 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.059 -16.463 5.974 19.278 hybrid contribution 0.277 -0.082 0.714 0.770 sum -7.782 -16.545 6.689 19.469 Atomic orbital electron populations 1.23281 0.76299 1.03639 1.02724 1.86495 1.23433 1.33296 1.84255 1.23557 0.91877 0.81384 0.72299 1.90710 1.66810 1.36220 1.44408 1.22060 0.87565 0.99293 1.02397 0.85949 1.22648 0.98500 0.99622 0.95039 1.22439 0.95971 0.82126 1.01828 1.49071 1.54566 1.07921 1.25211 1.21005 0.80120 0.80695 0.85520 1.90701 1.48197 1.32336 1.67301 1.20240 0.99990 0.97661 0.92424 1.19058 1.03153 0.93284 1.02887 1.20298 0.96901 0.95301 0.97390 1.20299 1.03488 0.95099 1.06962 1.20672 0.96274 0.97236 0.98343 1.21286 0.99808 0.96548 1.00200 1.17331 0.89840 0.90321 0.89793 1.19453 0.98073 1.16257 1.14757 0.90829 1.25871 0.98317 0.93403 0.96415 1.69818 1.18859 1.24106 1.29363 0.86426 0.79675 0.78594 0.82736 1.19543 1.20110 1.18527 1.21459 0.96538 0.93093 0.85820 0.87667 1.22140 0.99523 1.03560 0.96375 0.91858 0.91823 0.88056 0.88707 0.90367 0.89269 0.90555 0.90755 0.88560 0.89828 0.89684 0.89597 0.86554 0.91006 0.91082 0.91958 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.55 10.57 -39.25 -0.41 -3.97 16 3 C 0.47 5.61 7.12 36.01 0.26 5.87 16 4 O -0.50 -7.80 14.99 -18.75 -0.28 -8.08 16 5 C -0.09 -0.95 3.14 -90.39 -0.28 -1.24 16 6 H 0.12 0.91 7.69 -51.93 -0.40 0.51 16 7 C -0.12 -1.03 6.59 -25.04 -0.17 -1.19 16 8 C 0.10 1.06 6.92 -2.31 -0.02 1.05 16 9 N -0.63 -9.90 2.92 -162.50 -0.47 -10.37 16 10 C 0.54 11.04 7.52 -10.99 -0.08 10.95 16 11 O -0.51 -13.02 16.37 5.56 0.09 -12.92 16 12 C -0.06 -1.28 4.12 -29.04 -0.12 -1.40 16 13 C -0.18 -4.49 4.43 -103.91 -0.46 -4.95 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 16 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 17 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 18 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 19 C -0.46 -12.13 8.14 -37.74 -0.31 -12.43 16 20 H 0.07 1.91 6.68 -52.49 -0.35 1.56 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 22 N -0.80 -20.72 10.97 55.55 0.61 -20.11 16 23 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 27 C 0.13 1.92 2.97 -66.87 -0.20 1.72 16 28 H 0.11 1.86 6.33 -51.93 -0.33 1.54 16 29 C -0.16 -2.03 9.30 37.15 0.35 -1.68 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.72 7.86 -51.93 -0.41 0.31 16 35 H 0.09 0.87 7.23 -51.93 -0.38 0.50 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 38 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.12 3.25 6.22 -52.49 -0.33 2.92 16 43 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -34.04 381.13 -8.66 -42.71 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.74 Total: 6.42 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.16 Total: -13.35 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.13 Total: -30.49 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.60 Total: -24.97 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.04 -8.66 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.511 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds