Wall clock time and date at job start Tue Mar 31 2020 17:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99703 * 2 1 4 4 O 1.20824 * 120.00702 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99653 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.28898 * 302.13437 * 5 3 2 7 7 C 1.54620 * 110.32899 * 64.37685 * 5 3 2 8 8 C 1.54594 * 102.91240 * 140.59309 * 7 5 3 9 9 N 1.48123 * 103.42195 * 322.86871 * 8 7 5 10 10 C 1.34776 * 127.03254 * 219.28623 * 9 8 7 11 11 O 1.21277 * 120.00191 * 179.68249 * 10 9 8 12 12 C 1.50700 * 119.99956 * 359.68623 * 10 9 8 13 13 C 1.50698 * 109.47013 * 179.97438 * 12 10 9 14 14 C 1.37642 * 120.12793 * 264.97505 * 13 12 10 15 15 C 1.38614 * 120.24896 * 180.02562 * 14 13 12 16 16 C 1.38651 * 120.50098 * 359.97438 * 15 14 13 17 17 C 1.37603 * 120.25128 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12946 * 84.99862 * 13 12 10 19 19 C 1.41398 * 120.24082 * 359.97438 * 18 13 12 20 20 H 1.07995 * 120.00181 * 334.03599 * 19 18 13 21 21 C 1.39948 * 119.99873 * 154.03040 * 19 18 13 22 22 N 1.30820 * 120.00005 * 343.66140 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 163.65231 * 21 19 18 24 24 H 1.48499 * 109.47047 * 90.00307 * 23 21 19 25 25 H 1.48501 * 109.47319 * 210.00590 * 23 21 19 26 26 H 1.48508 * 109.47055 * 330.00527 * 23 21 19 27 27 C 1.47486 * 105.93342 * 39.02668 * 9 8 7 28 28 H 1.08993 * 109.91222 * 215.42300 * 27 9 8 29 29 C 1.52994 * 109.91472 * 94.13917 * 27 9 8 30 30 H 1.08997 * 109.47209 * 300.00685 * 1 2 3 31 31 H 1.09006 * 109.46976 * 59.99832 * 1 2 3 32 32 H 1.08993 * 109.47130 * 179.97438 * 1 2 3 33 33 H 1.09001 * 110.73405 * 259.08238 * 7 5 3 34 34 H 1.08998 * 110.73704 * 22.22240 * 7 5 3 35 35 H 1.08998 * 110.61672 * 204.35900 * 8 7 5 36 36 H 1.08999 * 110.54371 * 81.34502 * 8 7 5 37 37 H 1.09001 * 109.47206 * 59.99892 * 12 10 9 38 38 H 1.09007 * 109.47004 * 299.99945 * 12 10 9 39 39 H 1.07995 * 119.87434 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.75006 * 180.02562 * 15 14 13 41 41 H 1.07997 * 119.87973 * 180.28190 * 16 15 14 42 42 H 1.07992 * 120.13040 * 179.97438 * 17 16 15 43 43 H 0.96996 * 120.00210 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.47114 * 61.45464 * 29 27 9 45 45 H 1.09004 * 109.47004 * 181.45464 * 29 27 9 46 46 H 1.09002 * 109.47347 * 301.45538 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9726 0.7514 0.8649 7 6 4.1350 0.6771 -1.3082 8 6 5.2981 1.6367 -1.6496 9 7 4.7768 2.9644 -1.2502 10 6 4.9493 4.1329 -1.8992 11 8 4.4577 5.1500 -1.4580 12 6 5.7531 4.1756 -3.1733 13 6 5.7930 5.5889 -3.6948 14 6 4.8844 6.0014 -4.6429 15 6 4.9191 7.3006 -5.1248 16 6 5.8668 8.1989 -4.6587 17 6 6.7850 7.8086 -3.7110 18 6 6.7595 6.4918 -3.2149 19 6 7.6979 6.0793 -2.2410 20 1 7.4564 5.2712 -1.5666 21 6 8.9398 6.7183 -2.1511 22 7 9.3666 7.4605 -3.1403 23 14 9.9878 6.5116 -0.6187 24 1 10.8825 5.3383 -0.7855 25 1 10.8065 7.7329 -0.4105 26 1 9.1073 6.2994 0.5582 27 6 4.0250 2.7450 -0.0004 28 1 3.1578 3.4044 0.0317 29 6 4.9296 3.0086 1.2050 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.5037 -0.3351 -1.1415 34 1 3.3824 0.6872 -2.0966 35 1 5.5137 1.6136 -2.7177 36 1 6.1862 1.3823 -1.0711 37 1 5.2900 3.5272 -3.9170 38 1 6.7684 3.8327 -2.9740 39 1 4.1416 5.3101 -5.0127 40 1 4.2020 7.6158 -5.8683 41 1 5.8819 9.2101 -5.0377 42 1 7.5225 8.5097 -3.3496 43 1 10.2272 7.9036 -3.0779 44 1 5.2632 4.0461 1.1889 45 1 4.3747 2.8195 2.1239 46 1 5.7955 2.3479 1.1609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787506183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:28 Heat of formation + Delta-G solvation = -121.179322 kcal Electronic energy + Delta-G solvation = -28847.908880 eV Core-core repulsion = 24894.363717 eV Total energy + Delta-G solvation = -3953.545163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03191 -40.84814 -39.47431 -38.34689 -37.47821 -35.50390 -33.80391 -32.78926 -32.14503 -31.34446 -29.27975 -28.38964 -27.40165 -26.87745 -24.06681 -23.39432 -22.83375 -21.90751 -20.97536 -19.94137 -19.05958 -18.85703 -18.14385 -17.70190 -17.30415 -17.13718 -16.98694 -16.28153 -16.07430 -15.53293 -15.37110 -14.96455 -14.83469 -14.57343 -14.38410 -14.14500 -13.99412 -13.81533 -13.56349 -13.41288 -13.32696 -13.07690 -12.89772 -12.77367 -12.73471 -12.71385 -12.54593 -12.45151 -12.13611 -12.04228 -11.85332 -11.80775 -11.43351 -11.33436 -11.21894 -11.01600 -10.75876 -9.67106 -9.23921 -9.17381 -8.59536 -6.29364 0.98132 1.07217 1.11272 1.35729 1.47251 1.53967 1.57733 1.80849 2.14154 2.20518 2.78182 3.21560 3.48644 3.68601 3.75085 4.08957 4.11605 4.23149 4.26625 4.29674 4.31704 4.36505 4.38632 4.40674 4.55845 4.56930 4.67205 4.68588 4.71278 4.74515 4.79965 4.99318 5.02163 5.05166 5.14091 5.19184 5.23789 5.30664 5.35421 5.49108 5.53871 5.76594 6.02867 6.15637 6.20031 6.41212 6.59877 6.64904 6.73102 6.98995 7.10444 7.36380 8.37266 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003553 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.731375 B = 7878.240283 C = 9116.971895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.468 3.532 4 O -0.544 6.544 5 C -0.083 4.083 6 H 0.164 0.836 7 C -0.107 4.107 8 C 0.088 3.912 9 N -0.628 5.628 10 C 0.533 3.467 11 O -0.579 6.579 12 C -0.058 4.058 13 C -0.189 4.189 14 C -0.093 4.093 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.194 4.194 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.070 0.930 21 C 0.036 3.964 22 N -0.826 5.826 23 Si 0.972 3.028 24 H -0.250 1.250 25 H -0.269 1.269 26 H -0.269 1.269 27 C 0.127 3.873 28 H 0.060 0.940 29 C -0.151 4.151 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.286 0.714 44 H 0.028 0.972 45 H 0.084 0.916 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -21.607 6.406 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.313 3.687 4 O -0.433 6.433 5 C -0.103 4.103 6 H 0.181 0.819 7 C -0.145 4.145 8 C -0.033 4.033 9 N -0.363 5.363 10 C 0.324 3.676 11 O -0.457 6.457 12 C -0.098 4.098 13 C -0.191 4.191 14 C -0.111 4.111 15 C -0.263 4.263 16 C -0.135 4.135 17 C -0.214 4.214 18 C 0.095 3.905 19 C -0.511 4.511 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.452 5.452 23 Si 0.793 3.207 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.194 1.194 27 C 0.023 3.977 28 H 0.078 0.922 29 C -0.209 4.209 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.690 -20.554 6.489 22.885 hybrid contribution 0.024 1.096 0.506 1.207 sum -7.666 -19.458 6.995 22.053 Atomic orbital electron populations 1.23562 0.74980 1.05878 1.02203 1.86488 1.24689 1.31834 1.83547 1.23933 0.92606 0.81234 0.70966 1.90712 1.67943 1.37911 1.46764 1.22082 0.86475 0.96497 1.05217 0.81899 1.22700 0.97196 1.01087 0.93497 1.22908 0.97686 0.79516 1.03185 1.49012 1.53589 1.08501 1.25193 1.20941 0.79666 0.81285 0.85714 1.90667 1.51089 1.35039 1.68954 1.20214 1.00601 0.95695 0.93257 1.19556 1.02076 0.95173 1.02315 1.20726 0.97225 0.96007 0.97147 1.20698 1.03400 0.95090 1.07112 1.20945 0.96064 0.98593 0.97902 1.21307 1.00962 0.96858 1.02235 1.17739 0.91205 0.90919 0.90683 1.19591 0.98966 1.17225 1.15273 0.91170 1.26685 0.99176 0.92764 0.99191 1.69878 1.19582 1.24696 1.31049 0.85367 0.77886 0.79396 0.78093 1.17424 1.19342 1.19358 1.21536 0.95213 0.95307 0.85625 0.92157 1.22091 1.00522 1.01498 0.96835 0.92182 0.92696 0.84376 0.84088 0.91085 0.88140 0.87986 0.87328 0.88149 0.86935 0.86768 0.87620 0.88455 0.90319 0.95317 0.89674 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -5.98 10.57 -51.37 -0.54 -6.52 16 3 C 0.47 10.51 7.12 71.24 0.51 11.02 16 4 O -0.54 -17.45 14.99 21.97 0.33 -17.12 16 5 C -0.08 -1.45 3.14 -10.65 -0.03 -1.48 16 6 H 0.16 1.56 7.69 -2.39 -0.02 1.54 16 7 C -0.11 -1.35 6.59 31.69 0.21 -1.14 16 8 C 0.09 1.57 6.92 86.61 0.60 2.16 16 9 N -0.63 -19.23 2.92 -786.42 -2.30 -21.52 16 10 C 0.53 22.37 7.52 87.66 0.66 23.03 16 11 O -0.58 -31.08 16.37 -3.02 -0.05 -31.13 16 12 C -0.06 -2.33 4.12 29.10 0.12 -2.21 16 13 C -0.19 -9.51 4.43 -19.40 -0.09 -9.60 16 14 C -0.09 -4.41 9.66 22.22 0.21 -4.20 16 15 C -0.24 -11.65 10.05 22.46 0.23 -11.42 16 16 C -0.12 -5.98 10.02 22.22 0.22 -5.76 16 17 C -0.19 -11.10 8.69 22.73 0.20 -10.90 16 18 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 19 C -0.48 -26.55 8.14 23.46 0.19 -26.36 16 20 H 0.07 3.78 6.68 -2.91 -0.02 3.76 16 21 C 0.04 1.88 5.16 85.26 0.44 2.32 16 22 N -0.83 -44.36 10.97 21.83 0.24 -44.12 16 23 Si 0.97 39.40 29.59 68.60 2.03 41.43 16 24 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 C 0.13 3.55 2.97 45.14 0.13 3.68 16 28 H 0.06 2.26 6.33 -2.39 -0.02 2.25 16 29 C -0.15 -3.76 9.30 71.98 0.67 -3.09 16 30 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.05 0.83 8.13 -2.38 -0.02 0.81 16 32 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.05 7.86 -2.39 -0.02 1.03 16 35 H 0.10 1.59 7.23 -2.39 -0.02 1.57 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.11 3.48 7.81 -2.39 -0.02 3.47 16 38 H 0.10 3.90 7.06 -2.38 -0.02 3.88 16 39 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.10 5.79 6.22 -2.91 -0.02 5.77 16 43 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 44 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -81.87 381.13 6.04 -75.83 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.98 Total: 30.18 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 5.35 Total: -27.03 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -2.06 Total: -65.64 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.26 Total: -54.77 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -81.87 6.04 -75.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.346 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds