Wall clock time and date at job start Tue Mar 31 2020 17:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00069 * 2 1 4 4 O 1.20827 * 119.99859 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00333 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.63373 * 325.71955 * 5 3 2 7 7 C 1.55153 * 110.72142 * 202.58077 * 5 3 2 8 8 C 1.54903 * 101.58120 * 205.95252 * 7 5 3 9 9 N 1.47421 * 104.83292 * 37.00715 * 8 7 5 10 10 C 1.34782 * 125.64874 * 155.83247 * 9 8 7 11 11 O 1.21282 * 120.00147 * 180.02562 * 10 9 8 12 12 C 1.50696 * 120.00092 * 359.75239 * 10 9 8 13 13 C 1.50699 * 109.47373 * 180.27367 * 12 10 9 14 14 C 1.37637 * 120.12872 * 264.72959 * 13 12 10 15 15 C 1.38612 * 120.24881 * 179.72219 * 14 13 12 16 16 C 1.38660 * 120.49729 * 0.55389 * 15 14 13 17 17 C 1.37591 * 120.25176 * 359.72556 * 16 15 14 18 18 C 1.40694 * 120.12713 * 84.99965 * 13 12 10 19 19 C 1.41399 * 120.24644 * 359.97438 * 18 13 12 20 20 H 1.08006 * 119.99371 * 334.76581 * 19 18 13 21 21 C 1.39935 * 120.00483 * 154.77059 * 19 18 13 22 22 N 1.30829 * 119.99981 * 342.92603 * 21 19 18 23 23 Si 1.86798 * 120.00268 * 162.92610 * 21 19 18 24 24 H 1.48498 * 109.47421 * 90.00160 * 23 21 19 25 25 H 1.48500 * 109.47359 * 210.00244 * 23 21 19 26 26 H 1.48505 * 109.47244 * 329.99967 * 23 21 19 27 27 C 1.47015 * 108.70476 * 336.09943 * 9 8 7 28 28 H 1.08999 * 109.88719 * 241.41320 * 27 9 8 29 29 C 1.53007 * 109.88306 * 120.24591 * 27 9 8 30 30 H 1.08993 * 109.47071 * 300.00164 * 1 2 3 31 31 H 1.09003 * 109.47025 * 60.00622 * 1 2 3 32 32 H 1.09003 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09003 * 111.00375 * 87.87836 * 7 5 3 34 34 H 1.08993 * 111.03468 * 324.04160 * 7 5 3 35 35 H 1.09007 * 110.36950 * 278.17171 * 8 7 5 36 36 H 1.09000 * 110.37150 * 155.84744 * 8 7 5 37 37 H 1.09004 * 109.47444 * 300.27636 * 12 10 9 38 38 H 1.09005 * 109.47001 * 60.27307 * 12 10 9 39 39 H 1.08008 * 119.87506 * 359.96895 * 14 13 12 40 40 H 1.08001 * 119.75041 * 180.25244 * 15 14 13 41 41 H 1.08008 * 119.86845 * 179.74792 * 16 15 14 42 42 H 1.07993 * 120.12934 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99814 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.46988 * 59.59011 * 29 27 9 45 45 H 1.09003 * 109.46754 * 179.58304 * 29 27 9 46 46 H 1.08996 * 109.47042 * 299.58620 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9943 0.4531 0.5736 7 6 4.0446 2.6416 0.5567 8 6 5.4246 2.7920 -0.1307 9 7 5.2377 2.2280 -1.4798 10 6 5.9725 2.5334 -2.5677 11 8 5.7283 2.0060 -3.6321 12 6 7.0937 3.5348 -2.4627 13 6 7.7473 3.7003 -3.8105 14 6 8.8733 2.9744 -4.1260 15 6 9.4732 3.1203 -5.3670 16 6 8.9544 4.0057 -6.2996 17 6 7.8329 4.7459 -6.0037 18 6 7.2122 4.6016 -4.7490 19 6 6.0588 5.3565 -4.4341 20 1 5.3582 4.9904 -3.6980 21 6 5.8249 6.5777 -5.0760 22 7 6.8000 7.1847 -5.7024 23 14 4.1206 7.3413 -5.0387 24 1 4.0002 8.2258 -3.8519 25 1 3.9080 8.1382 -6.2735 26 1 3.0983 6.2668 -4.9609 27 6 4.1128 1.2821 -1.4437 28 1 4.4590 0.2839 -1.7119 29 6 3.0203 1.7354 -2.4143 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 4.1500 2.6061 1.6411 34 1 3.3698 3.4437 0.2580 35 1 6.1831 2.2295 0.4139 36 1 5.7040 3.8437 -0.1945 37 1 6.6946 4.4938 -2.1323 38 1 7.8311 3.1805 -1.7423 39 1 9.2888 2.2854 -3.4053 40 1 10.3541 2.5437 -5.6076 41 1 9.4324 4.1144 -7.2621 42 1 7.4303 5.4345 -6.7317 43 1 6.6378 8.0310 -6.1476 44 1 3.4276 1.7807 -3.4243 45 1 2.1934 1.0257 -2.3876 46 1 2.6617 2.7224 -2.1224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787506184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:33 Heat of formation + Delta-G solvation = -101.237016 kcal Electronic energy + Delta-G solvation = -29008.567222 eV Core-core repulsion = 25055.886822 eV Total energy + Delta-G solvation = -3952.680400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15213 -39.62067 -37.88738 -36.93408 -36.33321 -33.59311 -32.48888 -31.38117 -31.07831 -29.41740 -28.34444 -26.80320 -26.19360 -25.01403 -23.13375 -22.70105 -20.90445 -20.37454 -19.63130 -18.66133 -17.73852 -17.13602 -16.93640 -16.82949 -16.36768 -15.67184 -15.22784 -15.12643 -14.43823 -14.32110 -13.89543 -13.65117 -13.57823 -13.33690 -13.17625 -12.84435 -12.58177 -12.51992 -12.30328 -12.17214 -12.10247 -11.69736 -11.64278 -11.52191 -11.15854 -11.08464 -11.02714 -10.98035 -10.92165 -10.91267 -10.66957 -10.54430 -10.36701 -9.45098 -9.34705 -9.13573 -9.09779 -8.40123 -7.28247 -7.26241 -6.71292 -4.30641 1.94928 2.40276 2.81143 2.97397 3.09394 3.15503 3.29461 3.30947 3.39910 3.96959 4.13998 4.28809 4.56611 4.69079 4.83846 4.86130 4.92828 4.95550 5.14811 5.24932 5.28174 5.41453 5.50607 5.55089 5.61727 5.72161 5.81631 5.96768 6.00495 6.05640 6.10996 6.17044 6.31209 6.41893 6.45862 6.54363 6.64875 6.83623 7.11827 7.33119 7.45803 7.52225 7.66950 7.85597 7.96982 8.10805 8.16771 8.34907 8.68057 8.81869 8.95139 9.05043 10.22796 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.003785 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.263126 B = 7396.281414 C = 8683.784963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.478 3.522 4 O -0.499 6.499 5 C -0.096 4.096 6 H 0.116 0.884 7 C -0.120 4.120 8 C 0.102 3.898 9 N -0.628 5.628 10 C 0.534 3.466 11 O -0.513 6.513 12 C -0.064 4.064 13 C -0.183 4.183 14 C -0.080 4.080 15 C -0.241 4.241 16 C -0.106 4.106 17 C -0.160 4.160 18 C 0.130 3.870 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.079 3.921 22 N -0.794 5.794 23 Si 0.899 3.101 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C 0.155 3.845 28 H 0.084 0.916 29 C -0.175 4.175 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 -9.524 14.095 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.386 6.386 5 C -0.116 4.116 6 H 0.135 0.865 7 C -0.158 4.158 8 C -0.021 4.021 9 N -0.366 5.366 10 C 0.325 3.675 11 O -0.386 6.386 12 C -0.104 4.104 13 C -0.185 4.185 14 C -0.098 4.098 15 C -0.260 4.260 16 C -0.125 4.125 17 C -0.180 4.180 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.139 4.139 22 N -0.420 5.420 23 Si 0.723 3.277 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 C 0.051 3.949 28 H 0.102 0.898 29 C -0.232 4.232 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.061 -9.265 13.269 18.080 hybrid contribution -1.047 0.431 0.040 1.133 sum -9.108 -8.834 13.309 18.388 Atomic orbital electron populations 1.23280 0.76278 1.03706 1.02651 1.86521 1.23477 1.33435 1.84115 1.23233 0.91422 0.81426 0.71889 1.90681 1.66838 1.36253 1.44783 1.22185 0.87936 1.01939 0.99538 0.86546 1.22874 0.97037 0.95284 1.00620 1.22298 0.96440 1.00350 0.83032 1.48757 1.33274 1.44872 1.09739 1.21030 0.82432 0.82443 0.81612 1.90678 1.68680 1.52304 1.26974 1.20248 0.94323 0.97796 0.98010 1.19034 0.98652 1.06227 0.94573 1.20293 0.95957 0.97788 0.95796 1.20298 1.03414 1.06063 0.96232 1.20672 0.97222 0.97244 0.97353 1.21289 0.97537 1.01701 0.97435 1.17327 0.90988 0.89115 0.89850 1.19461 1.06017 1.02504 1.20498 0.90834 1.25857 0.97858 0.96940 0.93231 1.69825 1.31997 1.14159 1.25977 0.86455 0.83188 0.79458 0.78552 1.19490 1.20058 1.18513 1.21178 0.87764 0.94505 0.91429 0.89809 1.22313 0.97274 1.01566 1.02086 0.91894 0.91756 0.88074 0.89203 0.88615 0.91068 0.89494 0.88593 0.90623 0.89784 0.89692 0.89619 0.86554 0.90977 0.89609 0.92726 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.74 10.57 -39.24 -0.41 -4.16 16 3 C 0.48 5.60 5.06 36.01 0.18 5.79 16 4 O -0.50 -7.09 14.85 -18.75 -0.28 -7.37 16 5 C -0.10 -0.99 3.38 -89.94 -0.30 -1.30 16 6 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.12 -1.17 6.37 -24.59 -0.16 -1.32 16 8 C 0.10 1.11 6.70 -2.53 -0.02 1.09 16 9 N -0.63 -9.53 3.08 -163.03 -0.50 -10.03 16 10 C 0.53 10.53 7.26 -10.98 -0.08 10.45 16 11 O -0.51 -12.28 14.91 5.56 0.08 -12.19 16 12 C -0.06 -1.26 4.19 -29.04 -0.12 -1.38 16 13 C -0.18 -4.42 4.43 -103.92 -0.46 -4.88 16 14 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 15 C -0.24 -5.65 10.05 -39.29 -0.39 -6.05 16 16 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 17 C -0.16 -4.33 8.69 -38.88 -0.34 -4.66 16 18 C 0.13 3.49 5.57 -106.82 -0.59 2.89 16 19 C -0.46 -12.09 8.16 -37.74 -0.31 -12.40 16 20 H 0.07 1.92 6.65 -52.48 -0.35 1.57 16 21 C 0.08 2.00 5.15 -17.34 -0.09 1.91 16 22 N -0.79 -20.67 10.96 55.55 0.61 -20.06 16 23 Si 0.90 19.27 29.59 -169.99 -5.03 14.24 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 C 0.16 2.12 3.42 -66.96 -0.23 1.89 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 C -0.17 -2.72 8.11 37.16 0.30 -2.41 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.12 7.23 -51.93 -0.38 0.75 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.93 7.47 -51.93 -0.39 0.55 16 37 H 0.10 1.87 6.75 -51.93 -0.35 1.52 16 38 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.08 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.12 3.23 6.19 -52.49 -0.32 2.90 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 44 H 0.09 1.60 6.69 -51.93 -0.35 1.25 16 45 H 0.05 0.75 7.17 -51.93 -0.37 0.38 16 46 H 0.06 1.09 7.59 -51.93 -0.39 0.70 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -32.64 375.29 -8.88 -41.52 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.68 Total: 6.70 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.32 Total: -14.32 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.11 Total: -30.09 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.61 Total: -23.72 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.64 -8.88 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.715 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds