Wall clock time and date at job start Tue Mar 31 2020 17:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 117.00069 * 2 1 4 4 O 1.20827 * 119.99859 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00333 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.63373 * 325.71955 * 5 3 2 7 7 C 1.55153 * 110.72142 * 202.58077 * 5 3 2 8 8 C 1.54903 * 101.58120 * 205.95252 * 7 5 3 9 9 N 1.47421 * 104.83292 * 37.00715 * 8 7 5 10 10 C 1.34782 * 125.64874 * 155.83247 * 9 8 7 11 11 O 1.21282 * 120.00147 * 180.02562 * 10 9 8 12 12 C 1.50696 * 120.00092 * 359.75239 * 10 9 8 13 13 C 1.50699 * 109.47373 * 180.27367 * 12 10 9 14 14 C 1.37637 * 120.12872 * 264.72959 * 13 12 10 15 15 C 1.38612 * 120.24881 * 179.72219 * 14 13 12 16 16 C 1.38660 * 120.49729 * 0.55389 * 15 14 13 17 17 C 1.37591 * 120.25176 * 359.72556 * 16 15 14 18 18 C 1.40694 * 120.12713 * 84.99965 * 13 12 10 19 19 C 1.41399 * 120.24644 * 359.97438 * 18 13 12 20 20 H 1.08006 * 119.99371 * 334.76581 * 19 18 13 21 21 C 1.39935 * 120.00483 * 154.77059 * 19 18 13 22 22 N 1.30829 * 119.99981 * 342.92603 * 21 19 18 23 23 Si 1.86798 * 120.00268 * 162.92610 * 21 19 18 24 24 H 1.48498 * 109.47421 * 90.00160 * 23 21 19 25 25 H 1.48500 * 109.47359 * 210.00244 * 23 21 19 26 26 H 1.48505 * 109.47244 * 329.99967 * 23 21 19 27 27 C 1.47015 * 108.70476 * 336.09943 * 9 8 7 28 28 H 1.08999 * 109.88719 * 241.41320 * 27 9 8 29 29 C 1.53007 * 109.88306 * 120.24591 * 27 9 8 30 30 H 1.08993 * 109.47071 * 300.00164 * 1 2 3 31 31 H 1.09003 * 109.47025 * 60.00622 * 1 2 3 32 32 H 1.09003 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09003 * 111.00375 * 87.87836 * 7 5 3 34 34 H 1.08993 * 111.03468 * 324.04160 * 7 5 3 35 35 H 1.09007 * 110.36950 * 278.17171 * 8 7 5 36 36 H 1.09000 * 110.37150 * 155.84744 * 8 7 5 37 37 H 1.09004 * 109.47444 * 300.27636 * 12 10 9 38 38 H 1.09005 * 109.47001 * 60.27307 * 12 10 9 39 39 H 1.08008 * 119.87506 * 359.96895 * 14 13 12 40 40 H 1.08001 * 119.75041 * 180.25244 * 15 14 13 41 41 H 1.08008 * 119.86845 * 179.74792 * 16 15 14 42 42 H 1.07993 * 120.12934 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99814 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.46988 * 59.59011 * 29 27 9 45 45 H 1.09003 * 109.46754 * 179.58304 * 29 27 9 46 46 H 1.08996 * 109.47042 * 299.58620 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9943 0.4531 0.5736 7 6 4.0446 2.6416 0.5567 8 6 5.4246 2.7920 -0.1307 9 7 5.2377 2.2280 -1.4798 10 6 5.9725 2.5334 -2.5677 11 8 5.7283 2.0060 -3.6321 12 6 7.0937 3.5348 -2.4627 13 6 7.7473 3.7003 -3.8105 14 6 8.8733 2.9744 -4.1260 15 6 9.4732 3.1203 -5.3670 16 6 8.9544 4.0057 -6.2996 17 6 7.8329 4.7459 -6.0037 18 6 7.2122 4.6016 -4.7490 19 6 6.0588 5.3565 -4.4341 20 1 5.3582 4.9904 -3.6980 21 6 5.8249 6.5777 -5.0760 22 7 6.8000 7.1847 -5.7024 23 14 4.1206 7.3413 -5.0387 24 1 4.0002 8.2258 -3.8519 25 1 3.9080 8.1382 -6.2735 26 1 3.0983 6.2668 -4.9609 27 6 4.1128 1.2821 -1.4437 28 1 4.4590 0.2839 -1.7119 29 6 3.0203 1.7354 -2.4143 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 4.1500 2.6061 1.6411 34 1 3.3698 3.4437 0.2580 35 1 6.1831 2.2295 0.4139 36 1 5.7040 3.8437 -0.1945 37 1 6.6946 4.4938 -2.1323 38 1 7.8311 3.1805 -1.7423 39 1 9.2888 2.2854 -3.4053 40 1 10.3541 2.5437 -5.6076 41 1 9.4324 4.1144 -7.2621 42 1 7.4303 5.4345 -6.7317 43 1 6.6378 8.0310 -6.1476 44 1 3.4276 1.7807 -3.4243 45 1 2.1934 1.0257 -2.3876 46 1 2.6617 2.7224 -2.1224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787506184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:32 Heat of formation + Delta-G solvation = -119.467856 kcal Electronic energy + Delta-G solvation = -29009.357770 eV Core-core repulsion = 25055.886822 eV Total energy + Delta-G solvation = -3953.470949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11453 -40.88115 -39.45576 -38.32367 -37.37533 -35.51308 -33.89928 -32.79533 -32.22558 -31.33400 -29.22524 -28.37315 -27.19182 -26.89141 -24.38304 -23.57866 -22.81923 -21.81573 -20.81468 -20.00865 -19.05215 -18.65308 -18.10715 -17.73000 -17.38811 -17.30941 -16.61305 -16.50661 -16.14077 -15.71076 -15.38366 -15.05481 -14.71125 -14.58454 -14.39959 -14.17526 -14.03179 -13.65098 -13.55844 -13.40086 -13.36333 -13.14507 -12.96567 -12.91377 -12.79328 -12.68209 -12.58085 -12.48231 -12.15954 -12.03265 -11.83425 -11.80399 -11.51093 -11.31743 -11.20941 -11.02921 -10.69321 -9.63858 -9.22669 -9.15573 -8.61853 -6.29629 0.96772 1.03967 1.14079 1.31769 1.42310 1.50569 1.60639 1.80716 2.16394 2.17450 2.76887 3.24671 3.37116 3.71352 3.74754 3.99230 4.11464 4.13026 4.20340 4.27085 4.30034 4.31848 4.37485 4.40169 4.42441 4.59499 4.65779 4.70246 4.71766 4.73799 4.81589 4.88595 4.90052 5.06960 5.10757 5.19467 5.19761 5.34172 5.37473 5.46473 5.55499 5.77488 6.04255 6.16863 6.22558 6.42230 6.55592 6.66384 6.74164 6.98833 7.11508 7.36358 8.34601 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.003785 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.263126 B = 7396.281414 C = 8683.784963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.478 3.522 4 O -0.529 6.529 5 C -0.085 4.085 6 H 0.157 0.843 7 C -0.113 4.113 8 C 0.094 3.906 9 N -0.624 5.624 10 C 0.533 3.467 11 O -0.569 6.569 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.089 4.089 15 C -0.242 4.242 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.066 0.934 21 C 0.041 3.959 22 N -0.823 5.823 23 Si 0.963 3.037 24 H -0.254 1.254 25 H -0.265 1.265 26 H -0.274 1.274 27 C 0.151 3.849 28 H 0.090 0.910 29 C -0.166 4.166 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.286 0.714 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -10.994 17.123 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.321 3.679 4 O -0.418 6.418 5 C -0.104 4.104 6 H 0.174 0.826 7 C -0.151 4.151 8 C -0.028 4.028 9 N -0.359 5.359 10 C 0.324 3.676 11 O -0.447 6.447 12 C -0.100 4.100 13 C -0.189 4.189 14 C -0.107 4.107 15 C -0.261 4.261 16 C -0.135 4.135 17 C -0.215 4.215 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.084 0.916 21 C -0.174 4.174 22 N -0.450 5.450 23 Si 0.785 3.215 24 H -0.178 1.178 25 H -0.189 1.189 26 H -0.199 1.199 27 C 0.047 3.953 28 H 0.108 0.892 29 C -0.224 4.224 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.896 -10.738 16.356 21.099 hybrid contribution -1.088 0.772 -0.867 1.592 sum -8.984 -9.965 15.488 20.492 Atomic orbital electron populations 1.23554 0.74873 1.05743 1.02441 1.86515 1.24896 1.32617 1.83584 1.23503 0.91973 0.81320 0.71059 1.90679 1.67641 1.37322 1.46183 1.22222 0.87078 1.03838 0.97293 0.82561 1.22883 0.95466 0.93990 1.02779 1.22698 0.98298 1.00901 0.80870 1.48670 1.32437 1.44441 1.10399 1.20879 0.82788 0.82058 0.81867 1.90656 1.70319 1.54442 1.29268 1.20236 0.95259 0.98036 0.96508 1.19527 0.98729 1.04735 0.95932 1.20745 0.95568 0.97892 0.96544 1.20729 1.04032 1.05336 0.96013 1.20948 0.96696 0.97171 0.98714 1.21294 0.99355 1.03125 0.97711 1.17712 0.91730 0.90510 0.90625 1.19562 1.06487 1.03457 1.21612 0.91556 1.26555 1.01121 0.97035 0.92670 1.69874 1.33659 1.14750 1.26683 0.85496 0.78219 0.78376 0.79438 1.17830 1.18914 1.19894 1.21291 0.86616 0.94129 0.93284 0.89237 1.22191 0.98425 1.01175 1.00608 0.91432 0.92713 0.84967 0.85234 0.91161 0.87269 0.89494 0.88878 0.86736 0.86292 0.86582 0.87718 0.88636 0.90327 0.93385 0.91286 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.67 10.57 -51.36 -0.54 -7.21 16 3 C 0.48 10.28 5.06 71.24 0.36 10.64 16 4 O -0.53 -14.61 14.85 21.96 0.33 -14.28 16 5 C -0.08 -1.49 3.38 -10.36 -0.04 -1.53 16 6 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 7 C -0.11 -1.84 6.37 31.98 0.20 -1.64 16 8 C 0.09 1.73 6.70 86.85 0.58 2.31 16 9 N -0.62 -18.04 3.08 -788.09 -2.43 -20.47 16 10 C 0.53 20.93 7.26 87.65 0.64 21.57 16 11 O -0.57 -28.05 14.91 -3.04 -0.05 -28.10 16 12 C -0.06 -2.35 4.19 29.10 0.12 -2.22 16 13 C -0.19 -9.08 4.43 -19.41 -0.09 -9.17 16 14 C -0.09 -4.02 9.66 22.22 0.21 -3.81 16 15 C -0.24 -11.07 10.05 22.46 0.23 -10.84 16 16 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 17 C -0.20 -10.99 8.69 22.73 0.20 -10.80 16 18 C 0.10 5.38 5.57 -21.29 -0.12 5.26 16 19 C -0.48 -26.71 8.16 23.46 0.19 -26.52 16 20 H 0.07 3.64 6.65 -2.91 -0.02 3.62 16 21 C 0.04 2.15 5.15 85.25 0.44 2.59 16 22 N -0.82 -44.47 10.96 21.82 0.24 -44.23 16 23 Si 0.96 40.80 29.59 68.60 2.03 42.83 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C 0.15 3.90 3.42 45.34 0.15 4.06 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 C -0.17 -5.31 8.11 71.98 0.58 -4.72 16 30 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.55 7.23 -2.39 -0.02 1.53 16 35 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 1.65 7.47 -2.39 -0.02 1.63 16 37 H 0.09 3.62 6.75 -2.38 -0.02 3.60 16 38 H 0.11 3.41 8.05 -2.38 -0.02 3.39 16 39 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.10 5.63 6.19 -2.91 -0.02 5.61 16 43 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 44 H 0.05 1.90 6.69 -2.39 -0.02 1.88 16 45 H 0.07 1.93 7.17 -2.39 -0.02 1.91 16 46 H 0.05 1.68 7.59 -2.39 -0.02 1.66 16 Total: -1.00 -76.20 375.29 5.66 -70.54 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.99 Total: 29.78 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.09 Total: -28.86 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -2.19 Total: -64.70 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.26 Total: -49.60 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -76.20 5.66 -70.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.925 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds