Wall clock time and date at job start Tue Mar 31 2020 17:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99982 * 2 1 4 4 O 1.20826 * 120.00096 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99948 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.64444 * 32.70298 * 5 3 2 7 7 C 1.55159 * 110.72142 * 155.84873 * 5 3 2 8 8 C 1.54910 * 101.58460 * 154.04603 * 7 5 3 9 9 N 1.47426 * 104.82914 * 322.98775 * 8 7 5 10 10 C 1.34777 * 125.64649 * 204.09862 * 9 8 7 11 11 O 1.21280 * 120.00154 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00087 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47211 * 180.02562 * 12 10 9 14 14 C 1.37639 * 120.12459 * 265.00220 * 13 12 10 15 15 C 1.38613 * 120.24708 * 180.02562 * 14 13 12 16 16 C 1.38654 * 120.50413 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.24337 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.13004 * 85.02067 * 13 12 10 19 19 C 1.41398 * 120.24259 * 359.97438 * 18 13 12 20 20 H 1.07994 * 119.99643 * 334.80158 * 19 18 13 21 21 C 1.39938 * 119.99848 * 154.80390 * 19 18 13 22 22 N 1.30824 * 120.00222 * 344.68384 * 21 19 18 23 23 Si 1.86806 * 120.00035 * 164.68043 * 21 19 18 24 24 H 1.48502 * 109.47007 * 89.99803 * 23 21 19 25 25 H 1.48493 * 109.47122 * 210.00450 * 23 21 19 26 26 H 1.48498 * 109.46824 * 330.00019 * 23 21 19 27 27 C 1.47026 * 108.70413 * 24.35557 * 9 8 7 28 28 H 1.09003 * 109.87693 * 118.13219 * 27 9 8 29 29 C 1.52993 * 109.88225 * 239.29513 * 27 9 8 30 30 H 1.08998 * 109.47606 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.47232 * 60.00090 * 1 2 3 32 32 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 33 33 H 1.08996 * 111.00551 * 35.96433 * 7 5 3 34 34 H 1.09004 * 110.99772 * 272.11850 * 7 5 3 35 35 H 1.09002 * 110.36224 * 204.15132 * 8 7 5 36 36 H 1.08997 * 110.46243 * 81.87325 * 8 7 5 37 37 H 1.09004 * 109.46860 * 60.00266 * 12 10 9 38 38 H 1.09002 * 109.47344 * 300.00670 * 12 10 9 39 39 H 1.08005 * 119.87768 * 0.02562 * 14 13 12 40 40 H 1.08004 * 119.74970 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.87847 * 179.72932 * 16 15 14 42 42 H 1.08003 * 120.12102 * 179.97438 * 17 16 15 43 43 H 0.97006 * 119.99799 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.47451 * 62.90162 * 29 27 9 45 45 H 1.09003 * 109.47263 * 182.90086 * 29 27 9 46 46 H 1.09003 * 109.47421 * 302.90155 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9951 0.4377 -0.5502 7 6 4.0454 2.6258 -0.5933 8 6 5.4245 2.7951 0.0918 9 7 5.2355 2.2683 1.4557 10 6 5.9696 2.6025 2.5355 11 8 5.7242 2.1039 3.6135 12 6 7.0953 3.5956 2.4033 13 6 7.7518 3.7923 3.7455 14 6 7.3662 4.8351 4.5569 15 6 7.9686 5.0188 5.7916 16 6 8.9644 4.1562 6.2241 17 6 9.3657 3.1070 5.4295 18 6 8.7614 2.9110 4.1738 19 6 9.1656 1.8362 3.3488 20 1 8.4828 1.4312 2.6166 21 6 10.4502 1.2972 3.4812 22 7 11.3717 1.9558 4.1358 23 14 10.8493 -0.3629 2.7232 24 1 11.3436 -0.1679 1.3365 25 1 11.8964 -1.0373 3.5318 26 1 9.6251 -1.2030 2.6988 27 6 4.1175 1.3135 1.4416 28 1 4.4714 0.3242 1.7319 29 6 3.0225 1.7803 2.4026 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.3699 3.4355 -0.3172 34 1 4.1524 2.5605 -1.6761 35 1 5.7037 3.8481 0.1271 36 1 6.1850 2.2191 -0.4353 37 1 6.7002 4.5476 2.0487 38 1 7.8301 3.2194 1.6915 39 1 6.5913 5.5129 4.2302 40 1 7.6601 5.8400 6.4217 41 1 9.4300 4.3113 7.1861 42 1 10.1418 2.4366 5.7682 43 1 12.2623 1.5823 4.2272 44 1 2.6257 2.7374 2.0641 45 1 2.2206 1.0423 2.4258 46 1 3.4408 1.8937 3.4028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787506186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:41 Heat of formation + Delta-G solvation = -101.187124 kcal Electronic energy + Delta-G solvation = -28842.127546 eV Core-core repulsion = 24889.449310 eV Total energy + Delta-G solvation = -3952.678237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17614 -39.63338 -37.89651 -36.94864 -36.35103 -33.59744 -32.50136 -31.39616 -31.10023 -29.40843 -28.37139 -26.80825 -26.22288 -25.01376 -23.16127 -22.71539 -20.89480 -20.39406 -19.64480 -18.67267 -17.77493 -17.14855 -16.93800 -16.84837 -16.37926 -15.57473 -15.48053 -14.98404 -14.45066 -14.34475 -13.93160 -13.64056 -13.59578 -13.36036 -13.22269 -12.84387 -12.60416 -12.55717 -12.33228 -12.17959 -12.13125 -11.70044 -11.68697 -11.52143 -11.18146 -11.09704 -11.03771 -11.00546 -10.94180 -10.92979 -10.67344 -10.56957 -10.36609 -9.46071 -9.34424 -9.14621 -9.10937 -8.40204 -7.27643 -7.26229 -6.69988 -4.31643 1.91078 2.38026 2.80278 2.97424 3.07990 3.13192 3.29458 3.30774 3.38277 3.95518 4.12837 4.26851 4.54302 4.69351 4.81239 4.85653 4.89973 4.93591 5.14658 5.22189 5.26754 5.40116 5.45876 5.55123 5.59237 5.68114 5.82691 5.92353 5.97792 6.05403 6.09327 6.13241 6.31958 6.34198 6.45601 6.54594 6.62562 6.83321 7.11183 7.33950 7.46344 7.48793 7.66863 7.85400 7.96996 8.10852 8.17011 8.34758 8.68023 8.81702 8.94872 9.04979 10.23238 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.003426 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.192355 B = 8171.025854 C = 9295.620260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.480 3.520 4 O -0.501 6.501 5 C -0.097 4.097 6 H 0.117 0.883 7 C -0.119 4.119 8 C 0.102 3.898 9 N -0.628 5.628 10 C 0.535 3.465 11 O -0.513 6.513 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.128 3.872 19 C -0.454 4.454 20 H 0.073 0.927 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.902 3.098 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 C 0.154 3.846 28 H 0.086 0.914 29 C -0.174 4.174 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.279 0.721 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -2.813 -12.064 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.117 4.117 6 H 0.135 0.865 7 C -0.157 4.157 8 C -0.021 4.021 9 N -0.366 5.366 10 C 0.325 3.675 11 O -0.386 6.386 12 C -0.104 4.104 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.484 4.484 20 H 0.091 0.909 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.186 1.186 27 C 0.050 3.950 28 H 0.104 0.896 29 C -0.232 4.232 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.898 -2.782 -11.299 18.126 hybrid contribution -0.002 -0.771 -0.392 0.865 sum -13.900 -3.553 -11.691 18.507 Atomic orbital electron populations 1.23280 0.76276 1.03756 1.02596 1.86533 1.23476 1.33403 1.84016 1.23229 0.91388 0.81395 0.71757 1.90663 1.66891 1.36272 1.45012 1.22183 0.87884 1.02109 0.99548 0.86509 1.22862 0.96964 0.95366 1.00481 1.22297 0.96463 1.00576 0.82772 1.48745 1.33632 1.45113 1.09133 1.21024 0.82038 0.82478 0.81962 1.90677 1.68325 1.53401 1.26233 1.20253 0.94561 0.96366 0.99217 1.19047 1.04636 0.99364 0.95362 1.20297 0.97967 0.97090 0.94566 1.20306 1.03978 1.03325 0.98282 1.20684 0.97341 0.96484 0.98062 1.21347 1.02942 0.99204 0.94407 1.17336 0.89019 0.90043 0.91011 1.19463 0.97610 1.13737 1.17604 0.90854 1.25878 0.96075 0.98064 0.94071 1.69817 1.03199 1.36185 1.32984 0.86406 0.79044 0.82412 0.79454 1.19529 1.20099 1.18555 1.21193 0.87754 0.94589 0.91439 0.89613 1.22311 0.97456 1.01384 1.02007 0.91796 0.91882 0.88046 0.88780 0.89173 0.89715 0.90808 0.90648 0.88556 0.89809 0.89703 0.89609 0.86292 0.91002 0.91776 0.92633 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.66 10.56 -39.26 -0.41 -4.08 16 3 C 0.48 5.42 5.15 36.00 0.19 5.61 16 4 O -0.50 -6.71 14.70 -18.75 -0.28 -6.98 16 5 C -0.10 -1.00 3.36 -89.93 -0.30 -1.31 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.12 -1.10 6.39 -24.58 -0.16 -1.26 16 8 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 9 N -0.63 -9.53 3.08 -163.01 -0.50 -10.03 16 10 C 0.53 10.54 7.27 -10.98 -0.08 10.46 16 11 O -0.51 -12.29 14.86 5.56 0.08 -12.20 16 12 C -0.06 -1.27 4.19 -29.03 -0.12 -1.39 16 13 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 14 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 15 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 16 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 17 C -0.16 -4.30 8.69 -38.87 -0.34 -4.64 16 18 C 0.13 3.44 5.57 -106.83 -0.60 2.85 16 19 C -0.45 -11.94 8.17 -37.74 -0.31 -12.25 16 20 H 0.07 1.87 6.64 -52.49 -0.35 1.52 16 21 C 0.08 1.91 5.19 -17.34 -0.09 1.82 16 22 N -0.80 -20.55 10.86 55.55 0.60 -19.94 16 23 Si 0.90 18.78 29.59 -169.99 -5.03 13.75 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 27 C 0.15 2.10 3.45 -66.95 -0.23 1.87 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 C -0.17 -2.51 8.11 37.15 0.30 -2.21 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.00 7.23 -51.93 -0.38 0.62 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.25 7.76 -51.93 -0.40 0.85 16 38 H 0.10 1.85 7.05 -51.93 -0.37 1.49 16 39 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.29 6.12 -52.48 -0.32 2.97 16 43 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 44 H 0.06 0.95 7.37 -51.93 -0.38 0.56 16 45 H 0.05 0.72 7.32 -51.93 -0.38 0.34 16 46 H 0.08 1.46 6.61 -51.93 -0.34 1.11 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -32.36 374.94 -8.88 -41.24 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.67 Total: 6.84 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.32 Total: -14.25 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.10 Total: -29.97 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.61 Total: -23.26 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.36 -8.88 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.945 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds