Wall clock time and date at job start Tue Mar 31 2020 17:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99982 * 2 1 4 4 O 1.20826 * 120.00096 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99948 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.64444 * 32.70298 * 5 3 2 7 7 C 1.55159 * 110.72142 * 155.84873 * 5 3 2 8 8 C 1.54910 * 101.58460 * 154.04603 * 7 5 3 9 9 N 1.47426 * 104.82914 * 322.98775 * 8 7 5 10 10 C 1.34777 * 125.64649 * 204.09862 * 9 8 7 11 11 O 1.21280 * 120.00154 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00087 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47211 * 180.02562 * 12 10 9 14 14 C 1.37639 * 120.12459 * 265.00220 * 13 12 10 15 15 C 1.38613 * 120.24708 * 180.02562 * 14 13 12 16 16 C 1.38654 * 120.50413 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.24337 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.13004 * 85.02067 * 13 12 10 19 19 C 1.41398 * 120.24259 * 359.97438 * 18 13 12 20 20 H 1.07994 * 119.99643 * 334.80158 * 19 18 13 21 21 C 1.39938 * 119.99848 * 154.80390 * 19 18 13 22 22 N 1.30824 * 120.00222 * 344.68384 * 21 19 18 23 23 Si 1.86806 * 120.00035 * 164.68043 * 21 19 18 24 24 H 1.48502 * 109.47007 * 89.99803 * 23 21 19 25 25 H 1.48493 * 109.47122 * 210.00450 * 23 21 19 26 26 H 1.48498 * 109.46824 * 330.00019 * 23 21 19 27 27 C 1.47026 * 108.70413 * 24.35557 * 9 8 7 28 28 H 1.09003 * 109.87693 * 118.13219 * 27 9 8 29 29 C 1.52993 * 109.88225 * 239.29513 * 27 9 8 30 30 H 1.08998 * 109.47606 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.47232 * 60.00090 * 1 2 3 32 32 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 33 33 H 1.08996 * 111.00551 * 35.96433 * 7 5 3 34 34 H 1.09004 * 110.99772 * 272.11850 * 7 5 3 35 35 H 1.09002 * 110.36224 * 204.15132 * 8 7 5 36 36 H 1.08997 * 110.46243 * 81.87325 * 8 7 5 37 37 H 1.09004 * 109.46860 * 60.00266 * 12 10 9 38 38 H 1.09002 * 109.47344 * 300.00670 * 12 10 9 39 39 H 1.08005 * 119.87768 * 0.02562 * 14 13 12 40 40 H 1.08004 * 119.74970 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.87847 * 179.72932 * 16 15 14 42 42 H 1.08003 * 120.12102 * 179.97438 * 17 16 15 43 43 H 0.97006 * 119.99799 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.47451 * 62.90162 * 29 27 9 45 45 H 1.09003 * 109.47263 * 182.90086 * 29 27 9 46 46 H 1.09003 * 109.47421 * 302.90155 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9951 0.4377 -0.5502 7 6 4.0454 2.6258 -0.5933 8 6 5.4245 2.7951 0.0918 9 7 5.2355 2.2683 1.4557 10 6 5.9696 2.6025 2.5355 11 8 5.7242 2.1039 3.6135 12 6 7.0953 3.5956 2.4033 13 6 7.7518 3.7923 3.7455 14 6 7.3662 4.8351 4.5569 15 6 7.9686 5.0188 5.7916 16 6 8.9644 4.1562 6.2241 17 6 9.3657 3.1070 5.4295 18 6 8.7614 2.9110 4.1738 19 6 9.1656 1.8362 3.3488 20 1 8.4828 1.4312 2.6166 21 6 10.4502 1.2972 3.4812 22 7 11.3717 1.9558 4.1358 23 14 10.8493 -0.3629 2.7232 24 1 11.3436 -0.1679 1.3365 25 1 11.8964 -1.0373 3.5318 26 1 9.6251 -1.2030 2.6988 27 6 4.1175 1.3135 1.4416 28 1 4.4714 0.3242 1.7319 29 6 3.0225 1.7803 2.4026 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.3699 3.4355 -0.3172 34 1 4.1524 2.5605 -1.6761 35 1 5.7037 3.8481 0.1271 36 1 6.1850 2.2191 -0.4353 37 1 6.7002 4.5476 2.0487 38 1 7.8301 3.2194 1.6915 39 1 6.5913 5.5129 4.2302 40 1 7.6601 5.8400 6.4217 41 1 9.4300 4.3113 7.1861 42 1 10.1418 2.4366 5.7682 43 1 12.2623 1.5823 4.2272 44 1 2.6257 2.7374 2.0641 45 1 2.2206 1.0423 2.4258 46 1 3.4408 1.8937 3.4028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787506186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:40 Heat of formation + Delta-G solvation = -118.881933 kcal Electronic energy + Delta-G solvation = -28842.894851 eV Core-core repulsion = 24889.449310 eV Total energy + Delta-G solvation = -3953.445541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11028 -40.88231 -39.45550 -38.32589 -37.36366 -35.49078 -33.90201 -32.79304 -32.22367 -31.31608 -29.21788 -28.37310 -27.18462 -26.86783 -24.38998 -23.56985 -22.80430 -21.81688 -20.81886 -20.01407 -19.03958 -18.65840 -18.10268 -17.70820 -17.41249 -17.22998 -16.74222 -16.38733 -16.12546 -15.70067 -15.38233 -15.07800 -14.70475 -14.57712 -14.36840 -14.20079 -14.01839 -13.63528 -13.50214 -13.39568 -13.35167 -13.12716 -12.95421 -12.87646 -12.73316 -12.71162 -12.54373 -12.48409 -12.11651 -12.04193 -11.82574 -11.79137 -11.50021 -11.32066 -11.19835 -11.00779 -10.69113 -9.64497 -9.21753 -9.15574 -8.56884 -6.27957 0.97670 1.04529 1.14603 1.37598 1.49018 1.55611 1.60495 1.82193 2.15394 2.21741 2.80234 3.25336 3.36426 3.71693 3.75355 3.99462 4.11532 4.12539 4.21327 4.28169 4.30625 4.33129 4.37820 4.38900 4.43484 4.57853 4.66845 4.71114 4.71260 4.73976 4.81307 4.89325 4.90642 5.06289 5.10783 5.19441 5.21284 5.34396 5.39012 5.45917 5.56400 5.78391 6.05025 6.17935 6.22738 6.43082 6.55366 6.66287 6.75266 7.00867 7.12636 7.35907 8.38750 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.003426 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.192355 B = 8171.025854 C = 9295.620260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.089 4.089 6 H 0.146 0.854 7 C -0.108 4.108 8 C 0.092 3.908 9 N -0.623 5.623 10 C 0.534 3.466 11 O -0.569 6.569 12 C -0.061 4.061 13 C -0.188 4.188 14 C -0.092 4.092 15 C -0.244 4.244 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.479 4.479 20 H 0.072 0.928 21 C 0.035 3.965 22 N -0.827 5.827 23 Si 0.972 3.028 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.267 1.267 27 C 0.148 3.852 28 H 0.077 0.923 29 C -0.163 4.163 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.286 0.714 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 -3.132 -14.839 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.325 3.675 4 O -0.414 6.414 5 C -0.108 4.108 6 H 0.164 0.836 7 C -0.146 4.146 8 C -0.029 4.029 9 N -0.359 5.359 10 C 0.324 3.676 11 O -0.447 6.447 12 C -0.100 4.100 13 C -0.190 4.190 14 C -0.110 4.110 15 C -0.263 4.263 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.509 4.509 20 H 0.090 0.910 21 C -0.179 4.179 22 N -0.453 5.453 23 Si 0.794 3.206 24 H -0.177 1.177 25 H -0.195 1.195 26 H -0.192 1.192 27 C 0.044 3.956 28 H 0.095 0.905 29 C -0.221 4.221 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.921 -3.088 -14.131 20.781 hybrid contribution 0.187 -0.615 0.487 0.807 sum -14.733 -3.704 -13.644 20.419 Atomic orbital electron populations 1.23560 0.74732 1.05707 1.02599 1.86524 1.25041 1.32756 1.83550 1.23360 0.91687 0.81337 0.71108 1.90659 1.67502 1.37081 1.46146 1.22191 0.87403 1.04030 0.97222 0.83624 1.22863 0.95234 0.94107 1.02347 1.22683 0.98209 1.01580 0.80423 1.48657 1.32833 1.44572 1.09840 1.20878 0.82281 0.82206 0.82218 1.90655 1.70010 1.55431 1.28602 1.20235 0.94628 0.98204 0.96954 1.19527 1.03621 0.98536 0.97267 1.20721 0.98420 0.97400 0.94498 1.20701 1.03186 1.03596 0.98850 1.20948 0.97806 0.96146 0.98686 1.21363 1.03978 1.00472 0.95615 1.17737 0.90335 0.91233 0.91326 1.19620 0.98356 1.14643 1.18281 0.90995 1.26694 0.95509 1.01329 0.94397 1.69884 1.03729 1.37772 1.33956 0.85350 0.78489 0.77423 0.79381 1.17654 1.19453 1.19151 1.21286 0.87012 0.93645 0.93675 0.90466 1.22169 0.97939 1.01579 1.00379 0.92383 0.91334 0.85214 0.90078 0.85541 0.88488 0.88772 0.87358 0.88249 0.86861 0.86862 0.87758 0.88234 0.90385 0.92201 0.91481 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.61 10.56 -51.42 -0.54 -7.15 16 3 C 0.48 9.85 5.15 71.23 0.37 10.22 16 4 O -0.53 -13.18 14.70 21.96 0.32 -12.85 16 5 C -0.09 -1.58 3.36 -10.35 -0.03 -1.62 16 6 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 7 C -0.11 -1.62 6.39 31.99 0.20 -1.42 16 8 C 0.09 1.72 6.69 86.85 0.58 2.30 16 9 N -0.62 -18.13 3.08 -788.02 -2.43 -20.56 16 10 C 0.53 21.00 7.27 87.66 0.64 21.63 16 11 O -0.57 -28.13 14.86 -3.03 -0.05 -28.17 16 12 C -0.06 -2.34 4.19 29.10 0.12 -2.22 16 13 C -0.19 -9.14 4.43 -19.41 -0.09 -9.22 16 14 C -0.09 -4.25 9.66 22.22 0.21 -4.04 16 15 C -0.24 -11.39 10.05 22.46 0.23 -11.17 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -10.93 8.69 22.73 0.20 -10.73 16 18 C 0.10 5.31 5.57 -21.29 -0.12 5.19 16 19 C -0.48 -25.88 8.17 23.46 0.19 -25.69 16 20 H 0.07 3.76 6.64 -2.91 -0.02 3.74 16 21 C 0.03 1.78 5.19 85.25 0.44 2.22 16 22 N -0.83 -43.91 10.86 21.82 0.24 -43.67 16 23 Si 0.97 38.76 29.59 68.60 2.03 40.79 16 24 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 C 0.15 3.87 3.45 45.34 0.16 4.03 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 C -0.16 -4.73 8.11 71.98 0.58 -4.15 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.50 7.23 -2.39 -0.02 1.48 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.60 7.48 -2.39 -0.02 1.59 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 3.36 7.76 -2.38 -0.02 3.34 16 38 H 0.10 3.75 7.05 -2.39 -0.02 3.73 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 42 H 0.10 5.83 6.12 -2.91 -0.02 5.81 16 43 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 44 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 45 H 0.07 1.73 7.32 -2.39 -0.02 1.72 16 46 H 0.05 1.82 6.61 -2.39 -0.02 1.80 16 Total: -1.00 -74.06 374.94 5.67 -68.39 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.99 Total: 32.04 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 5.10 Total: -28.81 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -2.19 Total: -64.23 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -0.27 Total: -48.18 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -74.06 5.67 -68.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787506186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.491 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds