Wall clock time and date at job start Tue Mar 31 2020 17:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36000 * 116.99672 * 2 1 4 4 C 1.37927 * 119.83389 * 0.29678 * 3 2 1 5 5 C 1.39738 * 120.12891 * 180.26199 * 4 3 2 6 6 C 1.47614 * 120.24433 * 179.53522 * 5 4 3 7 7 O 1.21581 * 119.99718 * 184.87319 * 6 5 4 8 8 N 1.34774 * 120.00335 * 4.86818 * 6 5 4 9 9 C 1.46492 * 120.00282 * 185.08836 * 8 6 5 10 10 C 1.52999 * 109.47156 * 174.76526 * 9 8 6 11 11 C 1.50696 * 115.55152 * 305.75187 * 10 9 8 12 12 H 1.07999 * 120.00353 * 144.41332 * 11 10 9 13 13 C 1.37875 * 119.99771 * 324.40727 * 11 10 9 14 14 N 1.31513 * 120.00298 * 4.50978 * 13 11 10 15 15 Si 1.86803 * 120.00050 * 184.51254 * 13 11 10 16 16 H 1.48496 * 109.47234 * 89.99640 * 15 13 11 17 17 H 1.48504 * 109.47216 * 210.00328 * 15 13 11 18 18 H 1.48506 * 109.46979 * 329.99734 * 15 13 11 19 19 C 1.53008 * 117.49740 * 160.07828 * 10 9 8 20 20 C 1.53008 * 117.49865 * 91.42490 * 10 9 8 21 21 C 1.39790 * 119.50742 * 359.25942 * 5 4 3 22 22 C 1.37389 * 119.96155 * 0.26786 * 21 5 4 23 23 C 1.39040 * 120.96895 * 0.38574 * 22 21 5 24 24 O 1.36091 * 111.17606 * 178.95733 * 23 22 21 25 25 C 1.43760 * 109.23464 * 19.40708 * 24 23 22 26 26 H 1.09002 * 110.74725 * 90.52678 * 25 24 23 27 27 C 1.52996 * 110.74897 * 213.68919 * 25 24 23 28 28 C 1.51686 * 132.01315 * 180.90912 * 22 21 5 29 29 H 1.09003 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46954 * 300.00411 * 1 2 3 31 31 H 1.09001 * 109.46854 * 60.00872 * 1 2 3 32 32 H 1.07997 * 119.94102 * 0.02562 * 4 3 2 33 33 H 0.97008 * 119.99841 * 4.80651 * 8 6 5 34 34 H 1.09000 * 109.46952 * 294.76535 * 9 8 6 35 35 H 1.08997 * 109.47361 * 54.76573 * 9 8 6 36 36 H 0.97003 * 120.00138 * 185.00143 * 14 13 11 37 37 H 1.08997 * 117.50101 * 0.02562 * 19 10 9 38 38 H 1.09002 * 117.49558 * 145.02337 * 19 10 9 39 39 H 1.08996 * 117.49317 * 214.97902 * 20 10 9 40 40 H 1.08996 * 117.49659 * 359.97438 * 20 10 9 41 41 H 1.08002 * 120.01518 * 180.29081 * 21 5 4 42 42 H 1.09002 * 109.46740 * 58.55325 * 27 25 24 43 43 H 1.09006 * 109.46823 * 178.54160 * 27 25 24 44 44 H 1.08990 * 109.47446 * 298.54714 * 27 25 24 45 45 H 1.09001 * 110.94228 * 282.53097 * 28 22 21 46 46 H 1.09004 * 110.93478 * 46.20996 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2918 2.3663 0.0062 5 6 1.9197 3.6147 0.0007 6 6 1.1145 4.8519 -0.0030 7 8 1.6622 5.9333 -0.0972 8 7 -0.2277 4.7828 0.0979 9 6 -1.0346 6.0000 -0.0177 10 6 -2.5194 5.6314 0.0017 11 6 -2.9487 4.6093 -1.0191 12 1 -3.7134 3.8877 -0.7722 13 6 -2.3652 4.5953 -2.2682 14 7 -1.3732 5.4149 -2.5398 15 14 -2.9837 3.4123 -3.5749 16 1 -4.0638 4.0623 -4.3598 17 1 -1.8652 3.0461 -4.4805 18 1 -3.5138 2.1878 -2.9230 19 6 -3.5168 6.7354 0.3588 20 6 -3.2253 5.6139 1.3591 21 6 3.3159 3.6832 0.0046 22 6 4.0595 2.5279 0.0083 23 6 3.4444 1.2810 0.0001 24 8 4.3649 0.2788 -0.0175 25 6 5.6316 0.7914 0.4290 26 1 5.7337 0.6814 1.5087 27 6 6.7844 0.0942 -0.2961 28 6 5.5565 2.2842 0.0308 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2136 2.3055 0.0114 33 1 -0.6597 3.9265 0.2430 34 1 -0.8138 6.6630 0.8189 35 1 -0.7979 6.5053 -0.9540 36 1 -1.0108 5.4566 -3.4386 37 1 -3.1152 7.7243 0.5795 38 1 -4.4836 6.7221 -0.1444 39 1 -4.0005 4.8634 1.5135 40 1 -2.6318 5.8647 2.2382 41 1 3.8097 4.6437 0.0052 42 1 6.6803 0.2426 -1.3709 43 1 7.7322 0.5159 0.0387 44 1 6.7621 -0.9724 -0.0727 45 1 5.9926 2.4469 -0.9549 46 1 6.0421 2.9117 0.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797564046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:52 Heat of formation + Delta-G solvation = -51.070628 kcal Electronic energy + Delta-G solvation = -28867.678917 eV Core-core repulsion = 24917.173895 eV Total energy + Delta-G solvation = -3950.505022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29873 -39.29669 -38.66521 -36.86985 -36.05296 -33.21437 -32.98445 -32.23942 -31.05319 -29.72953 -27.49211 -26.77169 -25.87938 -25.29217 -23.00840 -21.85162 -21.45708 -21.29016 -19.63919 -19.31790 -18.00272 -17.50177 -16.96371 -16.51626 -16.05239 -15.70090 -15.34029 -14.89597 -14.80876 -14.66591 -14.18706 -13.81574 -13.70453 -13.50087 -13.17951 -13.07485 -13.04292 -12.68465 -12.48172 -12.19590 -12.16312 -11.76923 -11.50430 -11.50353 -11.44236 -11.20176 -11.15086 -11.00172 -10.78621 -10.58431 -10.55076 -10.28450 -9.78478 -9.20014 -8.96538 -8.88751 -8.53133 -8.33892 -7.96224 -7.70498 -6.05796 -4.25291 1.01894 1.41409 3.05372 3.17423 3.26715 3.27832 3.28851 3.35038 3.98966 4.20093 4.25076 4.33485 4.45136 4.73784 4.88165 4.90734 4.97430 5.06310 5.23410 5.30155 5.33210 5.34238 5.39900 5.40392 5.44331 5.59438 5.62862 5.67964 5.81431 5.83315 5.98613 6.16527 6.26576 6.30530 6.47944 6.50325 6.56668 6.57837 6.67975 6.86321 6.87947 7.06477 7.21808 7.47460 7.52710 7.61659 7.92109 8.25410 8.53305 8.77353 9.13801 9.38546 10.84245 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003702 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.539917 B = 7561.152042 C = 8318.426569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.314 6.314 3 C 0.105 3.895 4 C -0.141 4.141 5 C -0.104 4.104 6 C 0.553 3.447 7 O -0.558 6.558 8 N -0.673 5.673 9 C 0.165 3.835 10 C 0.035 3.965 11 C -0.499 4.499 12 H 0.061 0.939 13 C 0.076 3.924 14 N -0.865 5.865 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.198 4.198 20 C -0.213 4.213 21 C -0.051 4.051 22 C -0.150 4.150 23 C 0.090 3.910 24 O -0.293 6.293 25 C 0.074 3.926 26 H 0.086 0.914 27 C -0.149 4.149 28 C -0.102 4.102 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.395 0.605 34 H 0.020 0.980 35 H 0.117 0.883 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -9.530 5.817 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.228 6.228 3 C 0.060 3.940 4 C -0.160 4.160 5 C -0.108 4.108 6 C 0.339 3.661 7 O -0.439 6.439 8 N -0.319 5.319 9 C 0.042 3.958 10 C 0.034 3.966 11 C -0.536 4.536 12 H 0.079 0.921 13 C -0.129 4.129 14 N -0.501 5.501 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.236 4.236 20 C -0.250 4.250 21 C -0.070 4.070 22 C -0.151 4.151 23 C 0.044 3.956 24 O -0.208 6.208 25 C 0.018 3.982 26 H 0.104 0.896 27 C -0.206 4.206 28 C -0.139 4.139 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.229 0.771 34 H 0.039 0.961 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.157 0.843 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.020 -9.173 5.529 16.100 hybrid contribution -1.004 -0.716 -0.731 1.434 sum 11.016 -9.889 4.797 15.562 Atomic orbital electron populations 1.23146 0.78025 1.04047 1.02132 1.86129 1.21486 1.25861 1.89318 1.17970 0.87941 0.85264 1.02875 1.21252 1.00474 0.90635 1.03678 1.19876 0.93722 0.93214 1.03950 1.17807 0.82738 0.87739 0.77832 1.90694 1.71914 1.29309 1.51971 1.45523 1.04836 1.12194 1.69384 1.21135 0.88317 0.84828 1.01476 1.19250 0.89436 0.96230 0.91674 1.20504 1.21374 1.14935 0.96796 0.92083 1.24984 0.93770 0.95692 0.98416 1.69870 1.22965 1.36870 1.20350 0.86649 0.78616 0.81309 0.81879 1.20446 1.21090 1.19782 1.22938 1.02491 0.93260 1.04958 1.22965 1.05168 1.02590 0.94280 1.20260 0.91927 0.97608 0.97216 1.20451 0.95296 0.92420 1.06978 1.18805 0.87812 0.87470 1.01468 1.86883 1.18361 1.33470 1.82037 1.23383 0.83320 0.92336 0.99126 0.89609 1.21876 0.96009 1.01389 1.01297 1.21871 0.92243 0.96042 1.03752 0.88185 0.92259 0.92044 0.83656 0.77082 0.96149 0.86504 0.92586 0.91420 0.90199 0.90626 0.91311 0.84306 0.91395 0.90336 0.91315 0.88814 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.86 10.50 -19.76 -0.21 -5.06 16 3 C 0.10 1.71 6.70 -39.05 -0.26 1.45 16 4 C -0.14 -2.35 8.49 -39.14 -0.33 -2.68 16 5 C -0.10 -1.90 5.88 -104.93 -0.62 -2.52 16 6 C 0.55 11.90 7.75 -12.44 -0.10 11.80 16 7 O -0.56 -13.57 16.37 5.29 0.09 -13.49 16 8 N -0.67 -14.44 4.98 -61.33 -0.31 -14.74 16 9 C 0.17 3.86 4.60 -4.05 -0.02 3.84 16 10 C 0.03 0.80 2.04 -155.65 -0.32 0.48 16 11 C -0.50 -12.26 8.43 -34.44 -0.29 -12.55 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.08 16 13 C 0.08 1.90 5.32 -17.82 -0.09 1.80 16 14 N -0.86 -22.63 10.12 55.43 0.56 -22.07 16 15 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.20 -4.22 9.96 -26.69 -0.27 -4.48 16 20 C -0.21 -4.29 9.92 -26.69 -0.26 -4.56 16 21 C -0.05 -0.83 9.58 -39.31 -0.38 -1.21 16 22 C -0.15 -2.17 6.25 -104.15 -0.65 -2.82 16 23 C 0.09 1.42 6.98 -38.64 -0.27 1.15 16 24 O -0.29 -4.25 10.81 -20.05 -0.22 -4.47 16 25 C 0.07 0.75 4.26 -25.84 -0.11 0.64 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 27 C -0.15 -1.11 9.60 37.16 0.36 -0.75 16 28 C -0.10 -1.05 6.65 -26.51 -0.18 -1.23 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.65 7.63 -51.93 -0.40 0.26 16 31 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 32 H 0.15 2.29 4.65 -52.49 -0.24 2.05 16 33 H 0.39 7.91 6.21 -40.82 -0.25 7.65 16 34 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 3.12 5.93 -51.93 -0.31 2.81 16 36 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.14 2.21 7.66 -52.49 -0.40 1.80 16 42 H 0.07 0.54 8.11 -51.93 -0.42 0.11 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -29.88 379.11 -8.79 -38.67 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.60 Total: 11.19 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.79 Total: -10.39 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.26 Total: -36.81 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.34 Total: -23.02 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.88 -8.79 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797564046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.403 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds