Wall clock time and date at job start Tue Mar 31 2020 17:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36000 * 116.99672 * 2 1 4 4 C 1.37927 * 119.83389 * 0.29678 * 3 2 1 5 5 C 1.39738 * 120.12891 * 180.26199 * 4 3 2 6 6 C 1.47614 * 120.24433 * 179.53522 * 5 4 3 7 7 O 1.21581 * 119.99718 * 184.87319 * 6 5 4 8 8 N 1.34774 * 120.00335 * 4.86818 * 6 5 4 9 9 C 1.46492 * 120.00282 * 185.08836 * 8 6 5 10 10 C 1.52999 * 109.47156 * 174.76526 * 9 8 6 11 11 C 1.50696 * 115.55152 * 305.75187 * 10 9 8 12 12 H 1.07999 * 120.00353 * 144.41332 * 11 10 9 13 13 C 1.37875 * 119.99771 * 324.40727 * 11 10 9 14 14 N 1.31513 * 120.00298 * 4.50978 * 13 11 10 15 15 Si 1.86803 * 120.00050 * 184.51254 * 13 11 10 16 16 H 1.48496 * 109.47234 * 89.99640 * 15 13 11 17 17 H 1.48504 * 109.47216 * 210.00328 * 15 13 11 18 18 H 1.48506 * 109.46979 * 329.99734 * 15 13 11 19 19 C 1.53008 * 117.49740 * 160.07828 * 10 9 8 20 20 C 1.53008 * 117.49865 * 91.42490 * 10 9 8 21 21 C 1.39790 * 119.50742 * 359.25942 * 5 4 3 22 22 C 1.37389 * 119.96155 * 0.26786 * 21 5 4 23 23 C 1.39040 * 120.96895 * 0.38574 * 22 21 5 24 24 O 1.36091 * 111.17606 * 178.95733 * 23 22 21 25 25 C 1.43760 * 109.23464 * 19.40708 * 24 23 22 26 26 H 1.09002 * 110.74725 * 90.52678 * 25 24 23 27 27 C 1.52996 * 110.74897 * 213.68919 * 25 24 23 28 28 C 1.51686 * 132.01315 * 180.90912 * 22 21 5 29 29 H 1.09003 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46954 * 300.00411 * 1 2 3 31 31 H 1.09001 * 109.46854 * 60.00872 * 1 2 3 32 32 H 1.07997 * 119.94102 * 0.02562 * 4 3 2 33 33 H 0.97008 * 119.99841 * 4.80651 * 8 6 5 34 34 H 1.09000 * 109.46952 * 294.76535 * 9 8 6 35 35 H 1.08997 * 109.47361 * 54.76573 * 9 8 6 36 36 H 0.97003 * 120.00138 * 185.00143 * 14 13 11 37 37 H 1.08997 * 117.50101 * 0.02562 * 19 10 9 38 38 H 1.09002 * 117.49558 * 145.02337 * 19 10 9 39 39 H 1.08996 * 117.49317 * 214.97902 * 20 10 9 40 40 H 1.08996 * 117.49659 * 359.97438 * 20 10 9 41 41 H 1.08002 * 120.01518 * 180.29081 * 21 5 4 42 42 H 1.09002 * 109.46740 * 58.55325 * 27 25 24 43 43 H 1.09006 * 109.46823 * 178.54160 * 27 25 24 44 44 H 1.08990 * 109.47446 * 298.54714 * 27 25 24 45 45 H 1.09001 * 110.94228 * 282.53097 * 28 22 21 46 46 H 1.09004 * 110.93478 * 46.20996 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2918 2.3663 0.0062 5 6 1.9197 3.6147 0.0007 6 6 1.1145 4.8519 -0.0030 7 8 1.6622 5.9333 -0.0972 8 7 -0.2277 4.7828 0.0979 9 6 -1.0346 6.0000 -0.0177 10 6 -2.5194 5.6314 0.0017 11 6 -2.9487 4.6093 -1.0191 12 1 -3.7134 3.8877 -0.7722 13 6 -2.3652 4.5953 -2.2682 14 7 -1.3732 5.4149 -2.5398 15 14 -2.9837 3.4123 -3.5749 16 1 -4.0638 4.0623 -4.3598 17 1 -1.8652 3.0461 -4.4805 18 1 -3.5138 2.1878 -2.9230 19 6 -3.5168 6.7354 0.3588 20 6 -3.2253 5.6139 1.3591 21 6 3.3159 3.6832 0.0046 22 6 4.0595 2.5279 0.0083 23 6 3.4444 1.2810 0.0001 24 8 4.3649 0.2788 -0.0175 25 6 5.6316 0.7914 0.4290 26 1 5.7337 0.6814 1.5087 27 6 6.7844 0.0942 -0.2961 28 6 5.5565 2.2842 0.0308 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2136 2.3055 0.0114 33 1 -0.6597 3.9265 0.2430 34 1 -0.8138 6.6630 0.8189 35 1 -0.7979 6.5053 -0.9540 36 1 -1.0108 5.4566 -3.4386 37 1 -3.1152 7.7243 0.5795 38 1 -4.4836 6.7221 -0.1444 39 1 -4.0005 4.8634 1.5135 40 1 -2.6318 5.8647 2.2382 41 1 3.8097 4.6437 0.0052 42 1 6.6803 0.2426 -1.3709 43 1 7.7322 0.5159 0.0387 44 1 6.7621 -0.9724 -0.0727 45 1 5.9926 2.4469 -0.9549 46 1 6.0421 2.9117 0.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797564046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:51 Heat of formation + Delta-G solvation = -68.303711 kcal Electronic energy + Delta-G solvation = -28868.426199 eV Core-core repulsion = 24917.173895 eV Total energy + Delta-G solvation = -3951.252305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41457 -40.70012 -40.01741 -38.54225 -37.41163 -34.89853 -34.14432 -33.90686 -32.18454 -30.91181 -28.53110 -28.17322 -27.50535 -26.77536 -24.40674 -22.96129 -22.70007 -22.60515 -21.21555 -21.07852 -19.36081 -18.65823 -18.26574 -17.95483 -17.40343 -16.96580 -16.76228 -16.49574 -16.26803 -15.89550 -15.86424 -15.44832 -14.92053 -14.73771 -14.43781 -14.28162 -14.11415 -13.85041 -13.64636 -13.41688 -13.36174 -13.27981 -13.00143 -12.95019 -12.57225 -12.53228 -12.46892 -12.31886 -12.15824 -12.03629 -11.95318 -11.68662 -11.56242 -10.97900 -10.79417 -10.65718 -10.16086 -9.77088 -9.64680 -8.98515 -7.96169 -6.20442 -0.29270 0.17954 1.40041 1.45207 1.51746 1.81850 2.08747 2.26016 2.38693 2.44973 2.75281 3.06778 3.34530 3.55429 3.62344 3.72547 3.85261 4.02811 4.08553 4.13967 4.20802 4.28190 4.31313 4.35638 4.49381 4.54700 4.68628 4.70529 4.74666 4.75666 4.80580 4.84809 4.88806 4.97154 5.04605 5.10409 5.12553 5.21434 5.25539 5.33331 5.38728 5.53337 5.60367 5.81614 5.84633 5.97721 6.33573 6.36601 6.76542 6.92839 7.44318 7.45761 8.91004 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003702 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.539917 B = 7561.152042 C = 8318.426569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.095 3.905 4 C -0.140 4.140 5 C -0.128 4.128 6 C 0.550 3.450 7 O -0.595 6.595 8 N -0.670 5.670 9 C 0.176 3.824 10 C 0.006 3.994 11 C -0.502 4.502 12 H 0.062 0.938 13 C 0.039 3.961 14 N -0.889 5.889 15 Si 0.940 3.060 16 H -0.282 1.282 17 H -0.295 1.295 18 H -0.259 1.259 19 C -0.198 4.198 20 C -0.186 4.186 21 C -0.055 4.055 22 C -0.146 4.146 23 C 0.087 3.913 24 O -0.309 6.309 25 C 0.067 3.933 26 H 0.102 0.898 27 C -0.144 4.144 28 C -0.098 4.098 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.149 0.851 33 H 0.401 0.599 34 H 0.019 0.981 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.311 -11.349 6.728 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.049 3.951 4 C -0.159 4.159 5 C -0.131 4.131 6 C 0.338 3.662 7 O -0.479 6.479 8 N -0.316 5.316 9 C 0.052 3.948 10 C 0.005 3.995 11 C -0.539 4.539 12 H 0.080 0.920 13 C -0.163 4.163 14 N -0.526 5.526 15 Si 0.766 3.234 16 H -0.208 1.208 17 H -0.221 1.221 18 H -0.183 1.183 19 C -0.237 4.237 20 C -0.223 4.223 21 C -0.074 4.074 22 C -0.147 4.147 23 C 0.041 3.959 24 O -0.224 6.224 25 C 0.012 3.988 26 H 0.120 0.880 27 C -0.201 4.201 28 C -0.135 4.135 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.236 0.764 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.157 0.843 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.876 -11.025 6.458 18.140 hybrid contribution -1.235 -0.207 -0.973 1.586 sum 11.641 -11.231 5.485 17.081 Atomic orbital electron populations 1.23402 0.76482 1.05985 1.02181 1.86121 1.23146 1.25399 1.89224 1.18097 0.88571 0.85372 1.03022 1.21180 1.00660 0.90298 1.03776 1.19656 0.94320 0.92205 1.06968 1.18298 0.82771 0.88452 0.76665 1.90653 1.72513 1.30972 1.53734 1.45444 1.04919 1.11921 1.69293 1.20825 0.89117 0.85355 0.99484 1.19281 0.89306 0.97297 0.93569 1.20708 1.20977 1.15061 0.97199 0.92031 1.25535 0.93918 0.96827 0.99999 1.70060 1.24132 1.38456 1.19979 0.85830 0.77567 0.80249 0.79731 1.20773 1.22093 1.18296 1.22962 1.01764 0.93719 1.05263 1.22963 1.04311 1.01679 0.93376 1.20309 0.91341 0.98442 0.97286 1.20805 0.97648 0.91123 1.05117 1.19079 0.88034 0.88359 1.00438 1.86879 1.19702 1.33790 1.82016 1.23789 0.82213 0.92264 1.00499 0.87998 1.21917 0.96044 1.01466 1.00692 1.22047 0.89328 0.96634 1.05459 0.85363 0.91307 0.92878 0.83387 0.76370 0.96303 0.90050 0.93463 0.90632 0.90323 0.89558 0.89789 0.84320 0.91965 0.87434 0.91126 0.87506 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -9.78 10.50 -93.53 -0.98 -10.76 16 3 C 0.09 3.06 6.70 22.61 0.15 3.21 16 4 C -0.14 -4.70 8.49 22.56 0.19 -4.51 16 5 C -0.13 -4.78 5.88 -20.06 -0.12 -4.90 16 6 C 0.55 24.50 7.75 86.72 0.67 25.18 16 7 O -0.59 -30.15 16.37 -3.97 -0.07 -30.21 16 8 N -0.67 -29.45 4.98 -466.22 -2.32 -31.78 16 9 C 0.18 8.40 4.60 86.38 0.40 8.80 16 10 C 0.01 0.28 2.04 -52.92 -0.11 0.17 16 11 C -0.50 -24.53 8.43 25.60 0.22 -24.32 16 12 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 13 C 0.04 1.95 5.32 84.65 0.45 2.40 16 14 N -0.89 -47.84 10.12 21.45 0.22 -47.62 16 15 Si 0.94 40.50 29.54 68.60 2.03 42.52 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 C -0.20 -8.28 9.96 30.62 0.30 -7.98 16 20 C -0.19 -7.19 9.92 30.62 0.30 -6.88 16 21 C -0.05 -1.79 9.58 22.44 0.21 -1.57 16 22 C -0.15 -4.04 6.25 -19.56 -0.12 -4.16 16 23 C 0.09 2.66 6.98 22.88 0.16 2.82 16 24 O -0.31 -8.43 10.81 -94.57 -1.02 -9.45 16 25 C 0.07 1.17 4.26 31.17 0.13 1.30 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 C -0.14 -1.69 9.60 71.98 0.69 -1.00 16 28 C -0.10 -1.75 6.65 30.74 0.20 -1.55 16 29 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.44 7.63 -2.39 -0.02 1.42 16 31 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 32 H 0.15 4.74 4.65 -2.91 -0.01 4.73 16 33 H 0.40 16.33 6.21 -92.70 -0.58 15.76 16 34 H 0.02 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.08 4.53 5.93 -2.39 -0.01 4.52 16 36 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 37 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.14 4.47 7.66 -2.91 -0.02 4.45 16 42 H 0.06 0.82 8.11 -2.39 -0.02 0.80 16 43 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 1.68 7.90 -2.39 -0.02 1.66 16 46 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -65.38 379.11 3.14 -62.24 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.43 Total: 36.60 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.85 Total: -11.55 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.11 Total: -79.40 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -2.07 Total: -50.42 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -65.38 3.14 -62.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797564046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.062 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds