Wall clock time and date at job start Tue Mar 31 2020 17:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51994 * 2 1 4 4 C 1.53032 * 109.49780 * 239.91774 * 2 1 3 5 5 C 1.53045 * 109.53738 * 178.67870 * 4 2 1 6 6 C 1.52763 * 109.37906 * 61.24001 * 5 4 2 7 7 N 1.46922 * 109.01074 * 305.58947 * 6 5 4 8 8 C 1.34775 * 120.63140 * 233.58748 * 7 6 5 9 9 O 1.21353 * 120.00451 * 172.56228 * 8 7 6 10 10 C 1.49439 * 119.99957 * 352.56069 * 8 7 6 11 11 O 1.21254 * 120.00058 * 353.30847 * 10 8 7 12 12 O 1.34538 * 119.99949 * 173.03813 * 10 8 7 13 13 C 1.45203 * 116.99962 * 180.26990 * 12 10 8 14 14 C 1.50692 * 109.47340 * 179.97438 * 13 12 10 15 15 C 1.38638 * 119.75675 * 269.73548 * 14 13 12 16 16 C 1.37611 * 120.24857 * 179.72208 * 15 14 13 17 17 C 1.40711 * 119.74571 * 0.52247 * 16 15 14 18 18 C 1.41402 * 120.24349 * 179.72761 * 17 16 15 19 19 H 1.07999 * 120.00232 * 214.68206 * 18 17 16 20 20 C 1.39951 * 120.00053 * 34.67637 * 18 17 16 21 21 N 1.30829 * 119.99600 * 5.24541 * 20 18 17 22 22 Si 1.86794 * 120.00066 * 185.24459 * 20 18 17 23 23 H 1.48491 * 109.47388 * 60.00121 * 22 20 18 24 24 H 1.48497 * 109.47174 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46899 * 299.99878 * 22 20 18 26 26 C 1.40710 * 119.51264 * 359.74877 * 17 16 15 27 27 C 1.37611 * 119.74533 * 0.02562 * 26 17 16 28 28 C 1.46921 * 118.73849 * 53.30579 * 7 6 5 29 29 H 1.08995 * 109.47529 * 299.92133 * 1 2 3 30 30 H 1.08995 * 109.47210 * 59.92528 * 1 2 3 31 31 H 1.09004 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46166 * 298.70192 * 4 2 1 33 33 H 1.09006 * 109.46316 * 58.66176 * 4 2 1 34 34 H 1.08998 * 109.49639 * 181.31501 * 5 4 2 35 35 H 1.08997 * 109.50003 * 301.41786 * 5 4 2 36 36 H 1.09006 * 109.50673 * 185.70569 * 6 5 4 37 37 H 1.08997 * 109.43360 * 65.42870 * 6 5 4 38 38 H 1.08998 * 109.47336 * 300.01028 * 13 12 10 39 39 H 1.09009 * 109.46819 * 60.00333 * 13 12 10 40 40 H 1.08003 * 119.87005 * 359.97342 * 15 14 13 41 41 H 1.08007 * 120.12654 * 180.27555 * 16 15 14 42 42 H 0.97002 * 119.99696 * 180.02562 * 21 20 18 43 43 H 1.08009 * 120.12402 * 180.02562 * 26 17 16 44 44 H 1.08006 * 119.87293 * 180.02562 * 27 26 17 45 45 H 1.09003 * 109.58648 * 66.43831 * 28 7 6 46 46 H 1.09001 * 109.59090 * 186.71543 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6949 -1.2660 6 6 4.1056 -1.4214 -0.0331 7 7 3.5046 -0.8290 1.1696 8 6 4.2811 -0.3853 2.1779 9 8 3.7849 0.2226 3.1037 10 6 5.7531 -0.6420 2.1560 11 8 6.2321 -1.3513 1.2972 12 8 6.5475 -0.0817 3.0861 13 6 7.9681 -0.3700 2.9999 14 6 8.6930 0.3386 4.1149 15 6 9.1807 1.6205 3.9131 16 6 9.8393 2.2792 4.9262 17 6 10.0264 1.6424 6.1669 18 6 10.7066 2.3072 7.2132 19 1 11.3307 1.7467 7.8934 20 6 10.5711 3.6916 7.3674 21 7 9.7366 4.3555 6.6095 22 14 11.5816 4.5912 8.6552 23 1 13.0268 4.4017 8.3717 24 1 11.2551 6.0394 8.6177 25 1 11.2657 4.0478 10.0007 26 6 9.5320 0.3390 6.3586 27 6 8.8725 -0.2988 5.3330 28 6 2.0414 -0.7237 1.2496 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7572 -1.2352 33 1 1.6582 -0.2245 -2.1389 34 1 3.9335 -1.1896 -2.1670 35 1 3.9159 0.3390 -1.2540 36 1 5.1896 -1.3157 0.0101 37 1 3.8414 -2.4772 -0.0914 38 1 8.1267 -1.4447 3.0881 39 1 8.3515 -0.0237 2.0401 40 1 9.0398 2.1056 2.9585 41 1 10.2145 3.2796 4.7682 42 1 9.6430 5.3151 6.7160 43 1 9.6698 -0.1590 7.3071 44 1 8.4918 -1.2991 5.4780 45 1 1.6053 -1.7215 1.2981 46 1 1.7636 -0.1599 2.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805565760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:20 Heat of formation + Delta-G solvation = -96.604598 kcal Electronic energy + Delta-G solvation = -27515.896540 eV Core-core repulsion = 23563.417016 eV Total energy + Delta-G solvation = -3952.479523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16026 -39.55084 -37.89983 -37.74343 -36.46144 -33.98792 -33.76074 -32.20018 -30.85337 -29.42873 -27.93469 -27.21056 -26.38306 -24.46716 -23.19742 -22.61242 -21.11771 -20.84335 -20.13633 -19.82729 -17.71088 -17.38853 -17.35443 -16.68292 -16.31671 -15.65154 -15.36862 -15.04380 -14.81857 -14.65311 -14.29445 -13.95118 -13.87880 -13.64343 -13.35147 -13.04138 -12.98661 -12.62387 -12.44382 -12.34310 -12.18728 -12.05001 -11.75248 -11.64081 -11.42173 -11.19210 -11.17064 -11.03537 -10.84576 -10.83010 -10.73097 -10.47982 -10.29686 -9.75865 -9.51784 -9.47123 -9.26488 -8.99377 -7.57829 -7.36876 -6.75074 -4.48359 1.15393 1.82819 2.65162 2.97163 2.97529 3.05390 3.07854 3.08610 3.47568 3.91094 4.30933 4.41726 4.45028 4.52745 4.70513 4.74313 4.96291 5.05529 5.17521 5.23132 5.34543 5.39054 5.44757 5.45657 5.52657 5.56502 5.61097 5.66841 5.75385 5.78636 5.81106 5.92697 6.02910 6.10586 6.20197 6.28070 6.60894 6.84657 6.85878 7.02255 7.13289 7.24832 7.40761 7.52042 7.68505 7.85409 7.94204 7.97254 8.19873 8.54598 8.81035 8.85539 10.19781 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002138 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.967636 B =13091.133938 C =13644.235130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.064 3.936 7 N -0.584 5.584 8 C 0.529 3.471 9 O -0.488 6.488 10 C 0.457 3.543 11 O -0.491 6.491 12 O -0.315 6.315 13 C 0.131 3.869 14 C -0.229 4.229 15 C -0.078 4.078 16 C -0.156 4.156 17 C 0.121 3.879 18 C -0.463 4.463 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.801 5.801 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.219 4.219 27 C -0.067 4.067 28 C 0.114 3.886 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.282 0.718 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 -8.389 -14.754 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.057 4.057 7 N -0.320 5.320 8 C 0.311 3.689 9 O -0.362 6.362 10 C 0.296 3.704 11 O -0.382 6.382 12 O -0.229 6.229 13 C 0.059 3.941 14 C -0.230 4.230 15 C -0.097 4.097 16 C -0.175 4.175 17 C 0.119 3.881 18 C -0.493 4.493 19 H 0.097 0.903 20 C -0.146 4.146 21 N -0.426 5.426 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.239 4.239 27 C -0.086 4.086 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.677 -8.001 -14.473 21.460 hybrid contribution 0.321 0.389 0.423 0.658 sum -13.356 -7.613 -14.050 20.826 Atomic orbital electron populations 1.21761 0.94093 1.02113 1.02285 1.21516 0.96141 1.00361 0.94692 0.90476 1.21626 0.95500 1.00785 0.97480 1.21884 0.95852 1.01648 0.98070 1.22835 1.03501 0.96853 0.82502 1.47871 1.06686 1.59836 1.17650 1.19089 0.85613 0.80653 0.83517 1.90823 1.73889 1.37085 1.34354 1.23418 0.89295 0.77755 0.79885 1.90484 1.76456 1.36012 1.35205 1.86917 1.22382 1.64952 1.48621 1.21992 0.73856 0.99407 0.98835 1.18677 1.10796 0.97723 0.95801 1.20576 0.98048 0.93144 0.97922 1.21319 1.03582 1.00479 0.92151 1.17726 0.88023 0.90530 0.91866 1.19585 1.25578 0.92174 1.11914 0.90316 1.25923 0.94152 0.97830 0.96658 1.69767 1.28439 1.09690 1.34732 0.86249 0.80600 0.78159 0.80995 1.18894 1.20307 1.18992 1.21100 1.06766 0.98194 0.97833 1.20432 0.97894 0.97570 0.92678 1.21832 0.77914 1.01328 0.99653 0.92198 0.92173 0.92418 0.91658 0.91573 0.90314 0.91513 0.84288 0.91167 0.91369 0.91322 0.89128 0.86220 0.90731 0.88461 0.89091 0.90821 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.11 -0.83 2.87 -90.51 -0.26 -1.09 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -0.77 5.17 -26.69 -0.14 -0.91 16 5 C -0.14 -1.05 6.07 -26.83 -0.16 -1.21 16 6 C 0.06 0.63 5.99 -3.93 -0.02 0.60 16 7 N -0.58 -6.88 2.98 -173.55 -0.52 -7.40 16 8 C 0.53 8.19 7.74 -11.59 -0.09 8.11 16 9 O -0.49 -9.07 16.39 -7.52 -0.12 -9.19 16 10 C 0.46 7.51 7.89 35.40 0.28 7.78 16 11 O -0.49 -7.60 12.93 -19.08 -0.25 -7.85 16 12 O -0.32 -6.09 10.08 -45.04 -0.45 -6.55 16 13 C 0.13 2.40 5.59 36.00 0.20 2.60 16 14 C -0.23 -5.01 5.54 -104.33 -0.58 -5.59 16 15 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 16 C -0.16 -4.01 8.63 -38.88 -0.34 -4.34 16 17 C 0.12 3.19 5.50 -106.83 -0.59 2.61 16 18 C -0.46 -12.10 9.04 -37.74 -0.34 -12.45 16 19 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 20 C 0.07 1.78 5.32 -17.34 -0.09 1.69 16 21 N -0.80 -20.79 10.98 55.55 0.61 -20.18 16 22 Si 0.92 18.63 29.56 -169.99 -5.03 13.60 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.22 -5.33 9.80 -38.88 -0.38 -5.71 16 27 C -0.07 -1.50 9.67 -39.66 -0.38 -1.89 16 28 C 0.11 1.08 5.73 -3.72 -0.02 1.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.14 1.60 4.24 -55.19 -0.23 1.37 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.07 1.16 8.07 -51.92 -0.42 0.74 16 40 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.12 3.16 6.49 -52.48 -0.34 2.82 16 42 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 43 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 44 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 1.05 7.00 -51.93 -0.36 0.68 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -29.11 379.25 -9.82 -38.93 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.82 Total: 4.37 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.95 Total: -11.45 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.09 Total: -27.58 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.82 Total: -23.58 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.11 -9.82 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805565760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.677 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds