Wall clock time and date at job start Tue Mar 31 2020 17:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51994 * 2 1 4 4 C 1.53032 * 109.49780 * 239.91774 * 2 1 3 5 5 C 1.53045 * 109.53738 * 178.67870 * 4 2 1 6 6 C 1.52763 * 109.37906 * 61.24001 * 5 4 2 7 7 N 1.46922 * 109.01074 * 305.58947 * 6 5 4 8 8 C 1.34775 * 120.63140 * 233.58748 * 7 6 5 9 9 O 1.21353 * 120.00451 * 172.56228 * 8 7 6 10 10 C 1.49439 * 119.99957 * 352.56069 * 8 7 6 11 11 O 1.21254 * 120.00058 * 353.30847 * 10 8 7 12 12 O 1.34538 * 119.99949 * 173.03813 * 10 8 7 13 13 C 1.45203 * 116.99962 * 180.26990 * 12 10 8 14 14 C 1.50692 * 109.47340 * 179.97438 * 13 12 10 15 15 C 1.38638 * 119.75675 * 269.73548 * 14 13 12 16 16 C 1.37611 * 120.24857 * 179.72208 * 15 14 13 17 17 C 1.40711 * 119.74571 * 0.52247 * 16 15 14 18 18 C 1.41402 * 120.24349 * 179.72761 * 17 16 15 19 19 H 1.07999 * 120.00232 * 214.68206 * 18 17 16 20 20 C 1.39951 * 120.00053 * 34.67637 * 18 17 16 21 21 N 1.30829 * 119.99600 * 5.24541 * 20 18 17 22 22 Si 1.86794 * 120.00066 * 185.24459 * 20 18 17 23 23 H 1.48491 * 109.47388 * 60.00121 * 22 20 18 24 24 H 1.48497 * 109.47174 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46899 * 299.99878 * 22 20 18 26 26 C 1.40710 * 119.51264 * 359.74877 * 17 16 15 27 27 C 1.37611 * 119.74533 * 0.02562 * 26 17 16 28 28 C 1.46921 * 118.73849 * 53.30579 * 7 6 5 29 29 H 1.08995 * 109.47529 * 299.92133 * 1 2 3 30 30 H 1.08995 * 109.47210 * 59.92528 * 1 2 3 31 31 H 1.09004 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46166 * 298.70192 * 4 2 1 33 33 H 1.09006 * 109.46316 * 58.66176 * 4 2 1 34 34 H 1.08998 * 109.49639 * 181.31501 * 5 4 2 35 35 H 1.08997 * 109.50003 * 301.41786 * 5 4 2 36 36 H 1.09006 * 109.50673 * 185.70569 * 6 5 4 37 37 H 1.08997 * 109.43360 * 65.42870 * 6 5 4 38 38 H 1.08998 * 109.47336 * 300.01028 * 13 12 10 39 39 H 1.09009 * 109.46819 * 60.00333 * 13 12 10 40 40 H 1.08003 * 119.87005 * 359.97342 * 15 14 13 41 41 H 1.08007 * 120.12654 * 180.27555 * 16 15 14 42 42 H 0.97002 * 119.99696 * 180.02562 * 21 20 18 43 43 H 1.08009 * 120.12402 * 180.02562 * 26 17 16 44 44 H 1.08006 * 119.87293 * 180.02562 * 27 26 17 45 45 H 1.09003 * 109.58648 * 66.43831 * 28 7 6 46 46 H 1.09001 * 109.59090 * 186.71543 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6949 -1.2660 6 6 4.1056 -1.4214 -0.0331 7 7 3.5046 -0.8290 1.1696 8 6 4.2811 -0.3853 2.1779 9 8 3.7849 0.2226 3.1037 10 6 5.7531 -0.6420 2.1560 11 8 6.2321 -1.3513 1.2972 12 8 6.5475 -0.0817 3.0861 13 6 7.9681 -0.3700 2.9999 14 6 8.6930 0.3386 4.1149 15 6 9.1807 1.6205 3.9131 16 6 9.8393 2.2792 4.9262 17 6 10.0264 1.6424 6.1669 18 6 10.7066 2.3072 7.2132 19 1 11.3307 1.7467 7.8934 20 6 10.5711 3.6916 7.3674 21 7 9.7366 4.3555 6.6095 22 14 11.5816 4.5912 8.6552 23 1 13.0268 4.4017 8.3717 24 1 11.2551 6.0394 8.6177 25 1 11.2657 4.0478 10.0007 26 6 9.5320 0.3390 6.3586 27 6 8.8725 -0.2988 5.3330 28 6 2.0414 -0.7237 1.2496 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7572 -1.2352 33 1 1.6582 -0.2245 -2.1389 34 1 3.9335 -1.1896 -2.1670 35 1 3.9159 0.3390 -1.2540 36 1 5.1896 -1.3157 0.0101 37 1 3.8414 -2.4772 -0.0914 38 1 8.1267 -1.4447 3.0881 39 1 8.3515 -0.0237 2.0401 40 1 9.0398 2.1056 2.9585 41 1 10.2145 3.2796 4.7682 42 1 9.6430 5.3151 6.7160 43 1 9.6698 -0.1590 7.3071 44 1 8.4918 -1.2991 5.4780 45 1 1.6053 -1.7215 1.2981 46 1 1.7636 -0.1599 2.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805565760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:19 Heat of formation + Delta-G solvation = -110.204303 kcal Electronic energy + Delta-G solvation = -27516.486267 eV Core-core repulsion = 23563.417016 eV Total energy + Delta-G solvation = -3953.069251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36045 -40.72229 -39.50164 -38.91585 -37.84080 -35.64722 -34.79540 -32.91121 -32.63637 -31.29443 -29.34572 -28.32220 -27.28511 -25.91183 -24.54446 -23.30477 -22.98586 -21.92508 -21.82587 -20.70062 -19.25879 -18.98683 -18.52024 -17.96557 -17.53138 -17.20374 -16.48369 -16.31870 -16.01282 -15.72095 -15.44050 -15.32070 -15.26131 -14.68263 -14.51797 -14.18881 -14.10420 -14.00257 -13.87780 -13.69075 -13.57342 -13.14723 -12.86061 -12.82448 -12.74776 -12.62082 -12.50286 -12.13228 -12.04981 -11.94978 -11.79012 -11.69062 -11.54646 -11.34880 -11.32187 -11.11676 -10.61799 -9.93129 -9.45617 -9.26018 -8.60742 -6.44858 -0.10581 0.46380 1.03415 1.09420 1.38320 1.50236 1.50615 1.73657 2.20634 2.32160 2.73799 3.22086 3.67358 3.70327 3.81208 3.87957 3.95840 4.04399 4.06166 4.27206 4.31481 4.39015 4.43633 4.52258 4.55581 4.62940 4.72287 4.78046 4.84891 4.87815 4.97627 5.03889 5.12647 5.13199 5.17122 5.25522 5.26618 5.33750 5.36139 5.40415 5.48176 5.64417 5.81793 5.83888 6.04959 6.07304 6.20845 6.31044 6.62886 6.63931 6.89147 6.94151 8.36347 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002138 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.967636 B =13091.133938 C =13644.235130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.060 3.940 7 N -0.570 5.570 8 C 0.526 3.474 9 O -0.532 6.532 10 C 0.458 3.542 11 O -0.479 6.479 12 O -0.341 6.341 13 C 0.134 3.866 14 C -0.222 4.222 15 C -0.084 4.084 16 C -0.179 4.179 17 C 0.088 3.912 18 C -0.499 4.499 19 H 0.080 0.920 20 C 0.028 3.972 21 N -0.838 5.838 22 Si 0.989 3.011 23 H -0.257 1.257 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.234 4.234 27 C -0.071 4.071 28 C 0.108 3.892 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.287 0.713 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 -10.010 -16.587 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.060 4.060 7 N -0.304 5.304 8 C 0.308 3.692 9 O -0.409 6.409 10 C 0.298 3.702 11 O -0.369 6.369 12 O -0.256 6.256 13 C 0.063 3.937 14 C -0.223 4.223 15 C -0.103 4.103 16 C -0.199 4.199 17 C 0.085 3.915 18 C -0.529 4.529 19 H 0.098 0.902 20 C -0.185 4.185 21 N -0.464 5.464 22 Si 0.810 3.190 23 H -0.182 1.182 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.253 4.253 27 C -0.089 4.089 28 C -0.013 4.013 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.116 0.884 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.002 -9.667 -16.371 24.218 hybrid contribution 0.591 0.727 0.777 1.217 sum -14.412 -8.940 -15.594 23.039 Atomic orbital electron populations 1.21735 0.92522 1.03051 1.02524 1.21495 0.97365 0.99221 0.94281 0.92275 1.21628 0.94452 1.01666 0.97207 1.21882 0.96769 1.00776 0.97672 1.22964 1.02511 0.98226 0.82329 1.48088 1.07524 1.57787 1.16990 1.19043 0.85238 0.80903 0.84028 1.90806 1.74267 1.39578 1.36232 1.23565 0.89506 0.77698 0.79446 1.90512 1.76540 1.35364 1.34476 1.86844 1.22625 1.66075 1.50023 1.21926 0.73591 1.00168 0.98038 1.19062 1.09586 0.97060 0.96632 1.20848 0.97380 0.93855 0.98186 1.21286 1.05245 1.00247 0.93075 1.18092 0.89182 0.91792 0.92405 1.19849 1.26945 0.93386 1.12696 0.90192 1.26822 0.94857 0.98171 0.98682 1.69849 1.29889 1.10164 1.36531 0.85141 0.78941 0.76931 0.78005 1.18150 1.19438 1.18479 1.21320 1.07135 0.97853 0.99016 1.20793 0.96956 0.98868 0.92270 1.22101 0.76347 1.02741 1.00076 0.92762 0.91212 0.91101 0.90121 0.90197 0.88159 0.92847 0.85969 0.89047 0.89231 0.89625 0.87151 0.87988 0.90269 0.87626 0.86011 0.88386 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 71.98 0.66 -0.67 16 2 C -0.10 -1.38 2.87 -10.72 -0.03 -1.42 16 3 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.11 5.17 30.62 0.16 -0.95 16 5 C -0.13 -1.67 6.07 30.53 0.19 -1.48 16 6 C 0.06 1.02 5.99 86.22 0.52 1.53 16 7 N -0.57 -12.62 2.98 -821.35 -2.45 -15.07 16 8 C 0.53 16.12 7.74 87.27 0.68 16.80 16 9 O -0.53 -20.17 16.39 9.19 0.15 -20.02 16 10 C 0.46 14.62 7.89 70.84 0.56 15.18 16 11 O -0.48 -13.95 12.93 20.63 0.27 -13.68 16 12 O -0.34 -12.91 10.08 -49.70 -0.50 -13.41 16 13 C 0.13 4.70 5.59 71.23 0.40 5.10 16 14 C -0.22 -9.59 5.54 -19.68 -0.11 -9.70 16 15 C -0.08 -3.95 9.67 22.22 0.21 -3.74 16 16 C -0.18 -9.57 8.63 22.73 0.20 -9.38 16 17 C 0.09 4.80 5.50 -21.29 -0.12 4.68 16 18 C -0.50 -27.12 9.04 23.46 0.21 -26.91 16 19 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 20 C 0.03 1.43 5.32 85.26 0.45 1.89 16 21 N -0.84 -45.18 10.98 21.83 0.24 -44.94 16 22 Si 0.99 38.89 29.56 68.60 2.03 40.92 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 C -0.23 -11.57 9.80 22.73 0.22 -11.34 16 27 C -0.07 -3.12 9.67 22.22 0.21 -2.90 16 28 C 0.11 1.88 5.73 86.36 0.49 2.37 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 2.56 4.24 -54.02 -0.23 2.33 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 39 H 0.09 2.69 8.07 -2.38 -0.02 2.67 16 40 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 41 H 0.10 5.70 6.49 -2.91 -0.02 5.68 16 42 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 43 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.69 7.00 -2.39 -0.02 1.68 16 Total: -1.00 -65.82 379.25 5.40 -60.41 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.76 Total: 26.73 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.91 Total: -20.95 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -2.21 Total: -60.01 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.08 Total: -47.11 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -65.82 5.40 -60.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805565760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.791 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds