Wall clock time and date at job start Tue Mar 31 2020 17:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.52445 * 2 1 4 4 C 1.53038 * 109.49660 * 120.08338 * 2 1 3 5 5 C 1.53045 * 109.53673 * 181.31399 * 4 2 1 6 6 C 1.53188 * 109.31275 * 298.63153 * 5 4 2 7 7 N 1.46930 * 108.77568 * 54.63828 * 6 5 4 8 8 C 1.34767 * 120.63294 * 126.36482 * 7 6 5 9 9 O 1.21351 * 120.00124 * 188.15464 * 8 7 6 10 10 C 1.49433 * 120.00136 * 8.16176 * 8 7 6 11 11 O 1.21259 * 120.00092 * 6.93093 * 10 8 7 12 12 O 1.34546 * 120.00179 * 186.93666 * 10 8 7 13 13 C 1.45200 * 116.99955 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46990 * 179.97438 * 13 12 10 15 15 C 1.38637 * 119.75124 * 89.99754 * 14 13 12 16 16 C 1.37616 * 120.25141 * 179.97438 * 15 14 13 17 17 C 1.40724 * 119.74280 * 0.02562 * 16 15 14 18 18 C 1.41394 * 120.24145 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00237 * 222.93634 * 18 17 16 20 20 C 1.39949 * 119.99924 * 42.93931 * 18 17 16 21 21 N 1.30827 * 119.99871 * 357.40992 * 20 18 17 22 22 Si 1.86796 * 119.99818 * 177.12955 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00166 * 22 20 18 24 24 H 1.48503 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47148 * 300.00060 * 22 20 18 26 26 C 1.40711 * 119.50989 * 0.26809 * 17 16 15 27 27 C 1.37616 * 119.74713 * 359.47614 * 26 17 16 28 28 C 1.46928 * 118.73500 * 306.64051 * 7 6 5 29 29 H 1.09001 * 109.46855 * 299.91904 * 1 2 3 30 30 H 1.09004 * 109.47342 * 59.92101 * 1 2 3 31 31 H 1.09004 * 109.47603 * 179.91895 * 1 2 3 32 32 H 1.08997 * 109.46439 * 61.29692 * 4 2 1 33 33 H 1.09003 * 109.44846 * 301.32510 * 4 2 1 34 34 H 1.09003 * 109.49628 * 178.67897 * 5 4 2 35 35 H 1.09002 * 109.52237 * 58.60287 * 5 4 2 36 36 H 1.08996 * 109.58754 * 294.84584 * 6 5 4 37 37 H 1.08998 * 109.69981 * 174.48866 * 6 5 4 38 38 H 1.08995 * 109.47082 * 59.99870 * 13 12 10 39 39 H 1.08997 * 109.46971 * 299.99499 * 13 12 10 40 40 H 1.08000 * 119.87217 * 0.02634 * 15 14 13 41 41 H 1.07995 * 120.12999 * 179.97438 * 16 15 14 42 42 H 0.96995 * 119.99920 * 5.64134 * 21 20 18 43 43 H 1.08005 * 120.12430 * 179.70219 * 26 17 16 44 44 H 1.07997 * 119.87763 * 180.23352 * 27 26 17 45 45 H 1.08996 * 109.58779 * 173.14666 * 28 7 6 46 46 H 1.08997 * 109.58903 * 293.57020 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2659 6 6 4.1052 -1.4268 0.0307 7 7 3.5045 -0.8292 -1.1697 8 6 4.2810 -0.3857 -2.1779 9 8 3.7876 0.2376 -3.0948 10 6 5.7497 -0.6615 -2.1669 11 8 6.2237 -1.3888 -1.3204 12 8 6.5461 -0.1027 -3.0963 13 6 7.9624 -0.4144 -3.0243 14 6 8.6900 0.2949 -4.1371 15 6 9.1948 1.5689 -3.9266 16 6 9.8614 2.2259 -4.9354 17 6 10.0293 1.5999 -6.1845 18 6 10.7121 2.2655 -7.2286 19 1 10.3243 2.2303 -8.2360 20 6 11.8904 2.9699 -6.9567 21 7 12.3329 3.0551 -5.7285 22 14 12.8355 3.7818 -8.3484 23 1 11.9666 4.7817 -9.0196 24 1 14.0385 4.4588 -7.8009 25 1 13.2531 2.7497 -9.3312 26 6 9.5074 0.3092 -6.3887 27 6 8.8489 -0.3310 -5.3639 28 6 2.0415 -0.7188 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6967 -1.7573 1.2353 33 1 1.6581 -0.2243 2.1388 34 1 3.9334 -1.1898 2.1670 35 1 3.9164 0.3386 1.2543 36 1 3.8374 -2.4819 0.0868 37 1 5.1896 -1.3269 -0.0150 38 1 8.1032 -1.4904 -3.1265 39 1 8.3584 -0.0858 -2.0634 40 1 9.0650 2.0471 -2.9670 41 1 10.2534 3.2184 -4.7695 42 1 11.8913 2.5632 -5.0187 43 1 9.6264 -0.1786 -7.3449 44 1 8.4508 -1.3232 -5.5171 45 1 1.7645 -0.1497 -2.1346 46 1 1.6019 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805565762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:24 Heat of formation + Delta-G solvation = -98.235249 kcal Electronic energy + Delta-G solvation = -27491.213158 eV Core-core repulsion = 23538.662925 eV Total energy + Delta-G solvation = -3952.550234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24561 -39.64807 -38.06255 -37.95403 -36.61895 -34.12830 -33.93300 -32.24289 -30.73678 -29.65252 -27.92056 -27.12414 -26.39301 -24.51943 -23.30477 -22.67435 -21.33600 -20.91594 -20.28455 -19.90031 -17.98887 -17.79776 -17.47387 -16.77558 -16.40644 -15.71029 -15.16268 -15.01693 -14.74166 -14.62806 -14.34788 -14.27350 -13.91607 -13.78929 -13.41815 -13.15295 -13.05361 -12.87736 -12.57534 -12.39219 -12.25276 -12.17625 -12.02991 -11.70016 -11.48027 -11.24219 -11.12867 -11.06862 -10.87868 -10.78022 -10.63163 -10.50673 -10.38303 -9.80922 -9.63498 -9.39078 -9.10184 -9.06313 -7.88902 -7.52945 -7.04155 -4.57325 1.06367 1.71985 2.52587 2.69165 2.88305 3.16963 3.18742 3.36723 3.38865 4.04744 4.25174 4.35879 4.40023 4.47467 4.64614 4.70611 4.90677 4.99869 5.12362 5.17796 5.28888 5.29684 5.34017 5.35312 5.39438 5.40331 5.55257 5.59497 5.70014 5.71971 5.75815 5.79381 5.97597 5.99550 6.04409 6.08058 6.48943 6.61276 6.78331 6.79944 6.91126 7.28530 7.30808 7.43695 7.67205 7.69293 7.75657 7.80517 8.08790 8.17040 8.60746 8.87060 10.20830 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.002009 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.396000 B =13932.449261 C =14141.406648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.066 3.934 7 N -0.584 5.584 8 C 0.530 3.470 9 O -0.489 6.489 10 C 0.457 3.543 11 O -0.489 6.489 12 O -0.317 6.317 13 C 0.130 3.870 14 C -0.226 4.226 15 C -0.062 4.062 16 C -0.205 4.205 17 C 0.105 3.895 18 C -0.526 4.526 19 H 0.076 0.924 20 C 0.030 3.970 21 N -0.831 5.831 22 Si 1.077 2.923 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.277 1.277 26 C -0.209 4.209 27 C -0.063 4.063 28 C 0.114 3.886 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.299 0.701 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -7.854 13.595 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.055 4.055 7 N -0.320 5.320 8 C 0.312 3.688 9 O -0.363 6.363 10 C 0.296 3.704 11 O -0.379 6.379 12 O -0.231 6.231 13 C 0.058 3.942 14 C -0.228 4.228 15 C -0.081 4.081 16 C -0.224 4.224 17 C 0.103 3.897 18 C -0.556 4.556 19 H 0.094 0.906 20 C -0.188 4.188 21 N -0.459 5.459 22 Si 0.901 3.099 23 H -0.202 1.202 24 H -0.199 1.199 25 H -0.202 1.202 26 C -0.229 4.229 27 C -0.082 4.082 28 C -0.007 4.007 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.309 -6.741 13.008 21.923 hybrid contribution -1.322 -1.169 0.595 1.863 sum -17.631 -7.910 13.603 23.632 Atomic orbital electron populations 1.21761 0.94024 1.02149 1.02310 1.21442 0.96196 1.00388 0.94713 0.90500 1.21628 0.95460 1.00819 0.97499 1.21957 0.95872 1.01591 0.98028 1.22889 1.03291 0.96840 0.82503 1.47873 1.06741 1.59635 1.17728 1.19051 0.85500 0.80765 0.83472 1.90818 1.73863 1.36615 1.34968 1.23424 0.89210 0.78003 0.79739 1.90514 1.76516 1.35161 1.35716 1.86884 1.22437 1.64680 1.49059 1.21962 0.74063 0.99402 0.98755 1.18694 1.10339 0.98221 0.95506 1.20573 0.96579 0.93311 0.97635 1.21329 1.05748 0.99933 0.95412 1.17859 0.88835 0.90349 0.92689 1.20552 1.08502 1.30068 0.96519 0.90581 1.27020 0.96199 0.94383 1.01162 1.70477 1.41954 1.31929 1.01549 0.83449 0.76310 0.76640 0.73512 1.20234 1.19909 1.20232 1.21198 1.07669 0.95604 0.98392 1.20521 0.97098 0.97900 0.92648 1.21753 0.77844 1.01399 0.99705 0.92139 0.92190 0.92392 0.91620 0.91523 0.90295 0.91487 0.91056 0.84491 0.91146 0.91121 0.88635 0.87080 0.88444 0.88055 0.88673 0.88537 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.78 2.86 -90.72 -0.26 -1.03 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.73 5.17 -26.69 -0.14 -0.87 16 5 C -0.14 -0.99 6.08 -26.61 -0.16 -1.16 16 6 C 0.07 0.61 6.00 -3.71 -0.02 0.59 16 7 N -0.58 -6.54 2.98 -173.55 -0.52 -7.06 16 8 C 0.53 7.83 7.74 -11.60 -0.09 7.74 16 9 O -0.49 -8.66 16.40 -7.52 -0.12 -8.79 16 10 C 0.46 7.18 7.88 35.40 0.28 7.46 16 11 O -0.49 -7.32 12.96 -19.08 -0.25 -7.57 16 12 O -0.32 -5.83 10.08 -45.06 -0.45 -6.28 16 13 C 0.13 2.30 5.58 36.00 0.20 2.50 16 14 C -0.23 -4.81 5.54 -104.33 -0.58 -5.39 16 15 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 16 C -0.20 -5.15 7.60 -38.87 -0.30 -5.44 16 17 C 0.11 2.77 5.30 -106.82 -0.57 2.20 16 18 C -0.53 -14.02 8.99 -37.74 -0.34 -14.36 16 19 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 20 C 0.03 0.77 5.39 -17.34 -0.09 0.68 16 21 N -0.83 -22.55 12.88 55.55 0.72 -21.84 16 22 Si 1.08 21.93 29.93 -169.99 -5.09 16.84 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.21 -5.03 9.80 -38.87 -0.38 -5.41 16 27 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 28 C 0.11 1.02 5.70 -3.93 -0.02 1.00 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.14 1.52 4.28 -54.93 -0.24 1.28 16 38 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 39 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.11 2.87 6.69 -52.49 -0.35 2.52 16 42 H 0.30 8.18 5.22 -40.82 -0.21 7.97 16 43 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 44 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.10 0.99 7.00 -51.93 -0.36 0.62 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -29.61 377.50 -9.62 -39.23 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.71 Total: 5.24 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.89 Total: -15.47 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.20 Total: -28.89 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.82 Total: -22.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.09 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.61 -9.62 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805565762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.001 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds