Wall clock time and date at job start Tue Mar 31 2020 17:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.52445 * 2 1 4 4 C 1.53038 * 109.49660 * 120.08338 * 2 1 3 5 5 C 1.53045 * 109.53673 * 181.31399 * 4 2 1 6 6 C 1.53188 * 109.31275 * 298.63153 * 5 4 2 7 7 N 1.46930 * 108.77568 * 54.63828 * 6 5 4 8 8 C 1.34767 * 120.63294 * 126.36482 * 7 6 5 9 9 O 1.21351 * 120.00124 * 188.15464 * 8 7 6 10 10 C 1.49433 * 120.00136 * 8.16176 * 8 7 6 11 11 O 1.21259 * 120.00092 * 6.93093 * 10 8 7 12 12 O 1.34546 * 120.00179 * 186.93666 * 10 8 7 13 13 C 1.45200 * 116.99955 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46990 * 179.97438 * 13 12 10 15 15 C 1.38637 * 119.75124 * 89.99754 * 14 13 12 16 16 C 1.37616 * 120.25141 * 179.97438 * 15 14 13 17 17 C 1.40724 * 119.74280 * 0.02562 * 16 15 14 18 18 C 1.41394 * 120.24145 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00237 * 222.93634 * 18 17 16 20 20 C 1.39949 * 119.99924 * 42.93931 * 18 17 16 21 21 N 1.30827 * 119.99871 * 357.40992 * 20 18 17 22 22 Si 1.86796 * 119.99818 * 177.12955 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00166 * 22 20 18 24 24 H 1.48503 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47148 * 300.00060 * 22 20 18 26 26 C 1.40711 * 119.50989 * 0.26809 * 17 16 15 27 27 C 1.37616 * 119.74713 * 359.47614 * 26 17 16 28 28 C 1.46928 * 118.73500 * 306.64051 * 7 6 5 29 29 H 1.09001 * 109.46855 * 299.91904 * 1 2 3 30 30 H 1.09004 * 109.47342 * 59.92101 * 1 2 3 31 31 H 1.09004 * 109.47603 * 179.91895 * 1 2 3 32 32 H 1.08997 * 109.46439 * 61.29692 * 4 2 1 33 33 H 1.09003 * 109.44846 * 301.32510 * 4 2 1 34 34 H 1.09003 * 109.49628 * 178.67897 * 5 4 2 35 35 H 1.09002 * 109.52237 * 58.60287 * 5 4 2 36 36 H 1.08996 * 109.58754 * 294.84584 * 6 5 4 37 37 H 1.08998 * 109.69981 * 174.48866 * 6 5 4 38 38 H 1.08995 * 109.47082 * 59.99870 * 13 12 10 39 39 H 1.08997 * 109.46971 * 299.99499 * 13 12 10 40 40 H 1.08000 * 119.87217 * 0.02634 * 15 14 13 41 41 H 1.07995 * 120.12999 * 179.97438 * 16 15 14 42 42 H 0.96995 * 119.99920 * 5.64134 * 21 20 18 43 43 H 1.08005 * 120.12430 * 179.70219 * 26 17 16 44 44 H 1.07997 * 119.87763 * 180.23352 * 27 26 17 45 45 H 1.08996 * 109.58779 * 173.14666 * 28 7 6 46 46 H 1.08997 * 109.58903 * 293.57020 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2659 6 6 4.1052 -1.4268 0.0307 7 7 3.5045 -0.8292 -1.1697 8 6 4.2810 -0.3857 -2.1779 9 8 3.7876 0.2376 -3.0948 10 6 5.7497 -0.6615 -2.1669 11 8 6.2237 -1.3888 -1.3204 12 8 6.5461 -0.1027 -3.0963 13 6 7.9624 -0.4144 -3.0243 14 6 8.6900 0.2949 -4.1371 15 6 9.1948 1.5689 -3.9266 16 6 9.8614 2.2259 -4.9354 17 6 10.0293 1.5999 -6.1845 18 6 10.7121 2.2655 -7.2286 19 1 10.3243 2.2303 -8.2360 20 6 11.8904 2.9699 -6.9567 21 7 12.3329 3.0551 -5.7285 22 14 12.8355 3.7818 -8.3484 23 1 11.9666 4.7817 -9.0196 24 1 14.0385 4.4588 -7.8009 25 1 13.2531 2.7497 -9.3312 26 6 9.5074 0.3092 -6.3887 27 6 8.8489 -0.3310 -5.3639 28 6 2.0415 -0.7188 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6967 -1.7573 1.2353 33 1 1.6581 -0.2243 2.1388 34 1 3.9334 -1.1898 2.1670 35 1 3.9164 0.3386 1.2543 36 1 3.8374 -2.4819 0.0868 37 1 5.1896 -1.3269 -0.0150 38 1 8.1032 -1.4904 -3.1265 39 1 8.3584 -0.0858 -2.0634 40 1 9.0650 2.0471 -2.9670 41 1 10.2534 3.2184 -4.7695 42 1 11.8913 2.5632 -5.0187 43 1 9.6264 -0.1786 -7.3449 44 1 8.4508 -1.3232 -5.5171 45 1 1.7645 -0.1497 -2.1346 46 1 1.6019 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805565762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:23 Heat of formation + Delta-G solvation = -112.234674 kcal Electronic energy + Delta-G solvation = -27491.820219 eV Core-core repulsion = 23538.662925 eV Total energy + Delta-G solvation = -3953.157294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39751 -40.78137 -39.80490 -38.93636 -37.94044 -35.88920 -34.82392 -32.91215 -32.50558 -31.49315 -29.20093 -28.28272 -27.29263 -25.97706 -24.61633 -23.32522 -23.18018 -22.06131 -21.86075 -20.72100 -19.89591 -19.02976 -18.55802 -18.00753 -17.56890 -16.68813 -16.56608 -16.32545 -16.18680 -15.83473 -15.46475 -15.40290 -15.30933 -14.71477 -14.68971 -14.40982 -14.18827 -14.13960 -13.91363 -13.84311 -13.64767 -13.16315 -12.88333 -12.85398 -12.72696 -12.54515 -12.32470 -12.07242 -12.01160 -11.95725 -11.87516 -11.73331 -11.57051 -11.35981 -11.26040 -10.97085 -10.67175 -9.95126 -9.75963 -9.41975 -9.01065 -6.59359 -0.13964 0.34522 0.80827 0.98289 1.51124 1.61497 1.70269 1.79845 2.27570 2.37138 2.73299 3.13579 3.43899 3.68612 3.80238 3.83104 3.87832 3.94193 4.01623 4.22810 4.25484 4.28048 4.35707 4.36050 4.53131 4.61822 4.70553 4.72945 4.75617 4.83188 4.86506 4.95320 5.02512 5.04251 5.11098 5.15269 5.25117 5.31823 5.35371 5.40825 5.46599 5.56751 5.72394 5.81051 5.83358 5.85096 6.16064 6.17047 6.26542 6.60330 6.66841 6.94548 8.21876 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.002009 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.396000 B =13932.449261 C =14141.406648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.059 0.941 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.062 3.938 7 N -0.570 5.570 8 C 0.527 3.473 9 O -0.531 6.531 10 C 0.459 3.541 11 O -0.479 6.479 12 O -0.339 6.339 13 C 0.133 3.867 14 C -0.212 4.212 15 C -0.068 4.068 16 C -0.220 4.220 17 C 0.072 3.928 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.861 5.861 22 Si 1.126 2.874 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.260 1.260 26 C -0.221 4.221 27 C -0.065 4.065 28 C 0.108 3.892 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.286 0.714 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.079 0.921 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 -9.764 15.477 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.058 4.058 7 N -0.304 5.304 8 C 0.309 3.691 9 O -0.407 6.407 10 C 0.298 3.702 11 O -0.368 6.368 12 O -0.254 6.254 13 C 0.061 3.939 14 C -0.213 4.213 15 C -0.087 4.087 16 C -0.240 4.240 17 C 0.070 3.930 18 C -0.595 4.595 19 H 0.091 0.909 20 C -0.220 4.220 21 N -0.490 5.490 22 Si 0.943 3.057 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.185 1.185 26 C -0.241 4.241 27 C -0.084 4.084 28 C -0.012 4.012 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.098 0.902 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.199 -8.694 14.950 25.105 hybrid contribution -0.982 -0.767 0.248 1.270 sum -19.181 -9.461 15.197 26.237 Atomic orbital electron populations 1.21735 0.92503 1.03046 1.02553 1.21420 0.97375 0.99286 0.94300 0.92223 1.21630 0.94435 1.01666 0.97262 1.21953 0.96767 1.00749 0.97623 1.23014 1.02316 0.98153 0.82364 1.48086 1.07566 1.57666 1.17067 1.18994 0.85105 0.81015 0.83977 1.90803 1.74211 1.38978 1.36757 1.23579 0.89414 0.77916 0.79279 1.90543 1.76597 1.34606 1.35075 1.86812 1.22497 1.65707 1.50370 1.21900 0.73943 1.00105 0.97938 1.19126 1.08560 0.97377 0.96232 1.20875 0.95791 0.93992 0.98032 1.21302 1.06762 0.99696 0.96230 1.18209 0.89861 0.91612 0.93360 1.20746 1.09794 1.32334 0.96614 0.90910 1.28467 0.96662 0.94240 1.02598 1.70581 1.42774 1.33604 1.02075 0.82869 0.75196 0.76479 0.71109 1.18713 1.19836 1.18461 1.21416 1.07859 0.95192 0.99607 1.20907 0.96129 0.99218 0.92108 1.22013 0.76305 1.02763 1.00125 0.91242 0.92688 0.91135 0.90154 0.90225 0.88272 0.92758 0.89041 0.86145 0.89045 0.89400 0.86222 0.88903 0.89882 0.87322 0.85311 0.90224 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 71.98 0.66 -0.53 16 2 C -0.10 -1.27 2.86 -10.86 -0.03 -1.30 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.02 5.17 30.62 0.16 -0.86 16 5 C -0.13 -1.55 6.08 30.67 0.19 -1.36 16 6 C 0.06 0.98 6.00 86.36 0.52 1.50 16 7 N -0.57 -11.80 2.98 -821.35 -2.45 -14.25 16 8 C 0.53 15.17 7.74 87.26 0.68 15.85 16 9 O -0.53 -18.93 16.40 9.19 0.15 -18.78 16 10 C 0.46 13.75 7.88 70.84 0.56 14.31 16 11 O -0.48 -13.26 12.96 20.61 0.27 -13.00 16 12 O -0.34 -11.97 10.08 -49.78 -0.50 -12.47 16 13 C 0.13 4.39 5.58 71.23 0.40 4.79 16 14 C -0.21 -8.72 5.54 -19.67 -0.11 -8.82 16 15 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 16 C -0.22 -11.49 7.60 22.73 0.17 -11.32 16 17 C 0.07 3.91 5.30 -21.29 -0.11 3.80 16 18 C -0.56 -31.34 8.99 23.46 0.21 -31.13 16 19 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 20 C -0.01 -0.48 5.39 85.26 0.46 -0.02 16 21 N -0.86 -48.75 12.88 21.83 0.28 -48.47 16 22 Si 1.13 45.01 29.93 68.60 2.05 47.06 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 26 C -0.22 -10.76 9.80 22.73 0.22 -10.54 16 27 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 28 C 0.11 1.75 5.70 86.22 0.49 2.24 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 2.39 4.28 -49.93 -0.21 2.17 16 38 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 39 H 0.09 2.61 8.08 -2.39 -0.02 2.59 16 40 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 41 H 0.09 5.09 6.69 -2.91 -0.02 5.07 16 42 H 0.29 16.49 5.22 -92.71 -0.48 16.01 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 45 H 0.08 1.59 7.00 -2.39 -0.02 1.58 16 46 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -67.19 377.50 5.76 -61.44 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.06 Total: 27.30 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.89 Total: -28.82 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -2.16 Total: -62.72 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.08 Total: -44.25 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.05 Total: 47.06 kcal Total: -67.19 5.76 -61.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805565762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.797 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds