Wall clock time and date at job start Tue Mar 31 2020 17:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 110.21417 * 2 1 4 4 C 1.54481 * 110.24028 * 238.07087 * 2 1 3 5 5 H 1.09003 * 110.96263 * 148.17180 * 4 2 1 6 6 O 1.45196 * 110.97342 * 24.45170 * 4 2 1 7 7 C 1.34227 * 117.00641 * 149.99463 * 6 4 2 8 8 O 1.20823 * 119.99500 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00254 * 179.72249 * 7 6 4 10 10 C 1.53003 * 109.47136 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47253 * 305.38200 * 10 9 7 12 12 C 1.50709 * 109.47142 * 65.37800 * 10 9 7 13 13 H 1.07997 * 119.99793 * 34.62049 * 12 10 9 14 14 C 1.37868 * 119.99891 * 214.62103 * 12 10 9 15 15 N 1.31515 * 119.99900 * 186.44989 * 14 12 10 16 16 Si 1.86802 * 120.00205 * 6.45147 * 14 12 10 17 17 H 1.48499 * 109.47207 * 85.01504 * 16 14 12 18 18 H 1.48505 * 109.47078 * 205.01855 * 16 14 12 19 19 H 1.48501 * 109.47145 * 325.01641 * 16 14 12 20 20 C 1.50692 * 109.47246 * 185.38054 * 10 9 7 21 21 C 1.38238 * 119.99984 * 296.35677 * 20 10 9 22 22 C 1.38239 * 120.00142 * 179.74394 * 21 20 10 23 23 C 1.38231 * 119.99725 * 0.53134 * 22 21 20 24 24 C 1.38232 * 120.00302 * 359.74526 * 23 22 21 25 25 C 1.38234 * 120.00411 * 116.63083 * 20 10 9 26 26 C 1.54623 * 101.76601 * 266.32598 * 4 2 1 27 27 C 1.51273 * 104.19638 * 335.20704 * 26 4 2 28 28 O 1.21283 * 124.94270 * 196.25069 * 27 26 4 29 29 N 1.34418 * 110.11796 * 16.25186 * 27 26 4 30 30 C 1.46501 * 124.34950 * 180.43206 * 29 27 26 31 31 H 1.09006 * 109.47479 * 181.92969 * 1 2 3 32 32 H 1.09002 * 109.47193 * 301.92545 * 1 2 3 33 33 H 1.08993 * 109.47329 * 61.92523 * 1 2 3 34 34 H 1.09004 * 109.47052 * 299.99717 * 9 7 6 35 35 H 1.08994 * 109.47522 * 60.00236 * 9 7 6 36 36 H 0.97005 * 119.99974 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.00167 * 359.97438 * 21 20 10 38 38 H 1.07999 * 120.00171 * 180.29585 * 22 21 20 39 39 H 1.08001 * 119.99985 * 179.76710 * 23 22 21 40 40 H 1.07997 * 120.00652 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.99868 * 0.02562 * 25 20 10 42 42 H 1.09003 * 110.48597 * 93.88481 * 26 4 2 43 43 H 1.09001 * 110.48863 * 216.52181 * 26 4 2 44 44 H 1.09002 * 109.46937 * 269.96938 * 30 29 27 45 45 H 1.08996 * 109.47445 * 29.96904 * 30 29 27 46 46 H 1.08997 * 109.47105 * 149.97674 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0228 0.0000 4 6 2.0645 -0.7666 -1.2301 5 1 3.0108 -0.3462 -1.5706 6 8 1.0863 -0.7740 -2.3031 7 6 1.5591 -0.8181 -3.5586 8 8 2.7509 -0.8499 -3.7544 9 6 0.6033 -0.8348 -4.7236 10 6 1.3949 -0.8866 -6.0319 11 1 2.1068 -0.0617 -6.0588 12 6 2.1384 -2.1947 -6.1178 13 1 1.6995 -3.0930 -5.7097 14 6 3.3788 -2.2444 -6.7174 15 7 3.9719 -3.4029 -6.9065 16 14 4.2173 -0.6662 -7.2614 17 1 4.9534 -0.0761 -6.1145 18 1 5.1705 -0.9654 -8.3602 19 1 3.1947 0.2974 -7.7418 20 6 0.4469 -0.7701 -7.1975 21 6 -0.5028 -1.7505 -7.4167 22 6 -1.3759 -1.6410 -8.4828 23 6 -1.2922 -0.5568 -9.3362 24 6 -0.3389 0.4206 -9.1204 25 6 0.5305 0.3141 -8.0509 26 6 2.2646 -2.1873 -0.6538 27 6 2.4538 -1.9625 0.8301 28 8 2.9125 -2.7767 1.6032 29 7 2.0396 -0.7290 1.1673 30 6 2.0909 -0.1823 2.5256 31 1 -0.3634 -1.0271 0.0346 32 1 -0.3634 0.5434 0.8722 33 1 -0.3633 0.4836 -0.9067 34 1 -0.0397 -1.7121 -4.6534 35 1 -0.0088 0.0668 -4.7044 36 1 4.8448 -3.4379 -7.3280 37 1 -0.5651 -2.6001 -6.7528 38 1 -2.1210 -2.4045 -8.6512 39 1 -1.9719 -0.4732 -10.1713 40 1 -0.2737 1.2680 -9.7868 41 1 1.2756 1.0776 -7.8826 42 1 1.3826 -2.8011 -0.8372 43 1 3.1508 -2.6528 -1.0853 44 1 1.1610 -0.4128 3.0453 45 1 2.9280 -0.6261 3.0645 46 1 2.2219 0.8987 2.4774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806072074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:29 Heat of formation + Delta-G solvation = -90.217381 kcal Electronic energy + Delta-G solvation = -28575.178027 eV Core-core repulsion = 24622.975474 eV Total energy + Delta-G solvation = -3952.202553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96775 -39.68128 -38.61598 -37.03150 -35.75392 -34.23033 -32.39935 -31.77154 -30.47215 -30.26726 -29.25575 -26.83404 -26.15630 -25.09314 -23.00164 -22.05917 -21.68271 -20.40296 -19.61333 -19.30238 -17.42716 -17.07512 -17.05704 -16.27882 -15.99964 -15.72799 -15.50838 -15.18616 -14.60348 -14.31074 -13.96240 -13.93338 -13.87729 -13.64950 -13.10347 -12.89044 -12.79187 -12.72196 -12.56875 -12.49789 -12.40892 -12.16746 -11.99269 -11.92559 -11.51829 -11.21692 -11.01290 -10.87193 -10.63398 -10.51204 -10.44329 -10.03369 -9.83729 -9.76593 -9.65484 -9.25442 -8.98243 -8.51115 -8.26249 -7.90554 -6.08801 -4.07788 2.04050 2.07539 2.45181 2.61355 2.87791 3.05646 3.34872 3.39617 3.43466 4.11768 4.25741 4.44312 4.49424 4.61745 4.76795 4.97849 5.04489 5.11865 5.22719 5.29326 5.41506 5.44882 5.46648 5.50295 5.52557 5.57274 5.62612 5.73798 5.80686 5.83867 5.85932 5.99480 6.08292 6.17411 6.23582 6.29806 6.41970 6.60877 6.73255 6.85583 6.87192 6.90480 7.09267 7.19941 7.46569 7.61867 7.73378 7.99901 8.38762 8.43671 8.89897 9.55077 11.03594 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003349 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.081005 B = 8358.823415 C = 9349.020341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.095 0.905 4 C 0.082 3.918 5 H 0.108 0.892 6 O -0.351 6.351 7 C 0.458 3.542 8 O -0.466 6.466 9 C -0.089 4.089 10 C 0.053 3.947 11 H 0.051 0.949 12 C -0.499 4.499 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.893 5.893 16 Si 0.871 3.129 17 H -0.273 1.273 18 H -0.294 1.294 19 H -0.260 1.260 20 C -0.040 4.040 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.171 4.171 27 C 0.525 3.475 28 O -0.529 6.529 29 N -0.620 5.620 30 C 0.098 3.902 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 10.432 10.005 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.113 0.887 4 C 0.025 3.975 5 H 0.126 0.874 6 O -0.269 6.269 7 C 0.299 3.701 8 O -0.348 6.348 9 C -0.126 4.126 10 C 0.034 3.966 11 H 0.069 0.931 12 C -0.535 4.535 13 H 0.092 0.908 14 C -0.115 4.115 15 N -0.530 5.530 16 Si 0.698 3.302 17 H -0.198 1.198 18 H -0.221 1.221 19 H -0.184 1.184 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.211 4.211 27 C 0.313 3.687 28 O -0.406 6.406 29 N -0.356 5.356 30 C -0.044 4.044 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.174 9.915 10.383 17.038 hybrid contribution 0.774 0.673 -0.451 1.121 sum -8.400 10.588 9.932 16.772 Atomic orbital electron populations 1.21987 0.93265 1.03212 1.02670 1.21692 0.95987 0.95903 0.83430 0.88722 1.23233 0.93334 0.95256 0.85665 0.87373 1.86605 1.39510 1.85099 1.15731 1.24037 0.90293 0.72894 0.82869 1.90716 1.17383 1.42228 1.84517 1.21504 0.96825 1.03485 0.90833 1.18196 0.92180 1.00085 0.86181 0.93109 1.20605 1.01756 0.92433 1.38730 0.90837 1.24890 0.96837 0.95624 0.94190 1.69891 1.15924 1.24407 1.42777 0.86969 0.79959 0.84973 0.78270 1.19813 1.22068 1.18435 1.20604 0.93560 0.91998 0.97882 1.20971 0.94808 0.98393 0.97669 1.21061 0.99695 0.97833 0.95908 1.20881 0.99871 0.95787 1.00010 1.20968 0.96529 0.98929 0.98005 1.21142 0.99328 0.98606 0.96221 1.22793 1.06728 0.98725 0.92877 1.20734 0.76225 0.81245 0.90464 1.90724 1.45256 1.47377 1.57201 1.48287 1.63062 1.15502 1.08742 1.21531 1.02406 0.99029 0.81437 0.91842 0.92461 0.89974 0.88391 0.89949 0.92652 0.86157 0.87100 0.87370 0.87323 0.86973 0.86469 0.86830 0.92532 0.90607 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.93 37.16 0.33 -1.00 16 2 C 0.13 1.32 3.68 -67.01 -0.25 1.07 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.08 1.05 3.37 -25.10 -0.08 0.97 16 5 H 0.11 1.51 7.13 -51.93 -0.37 1.14 16 6 O -0.35 -4.99 8.44 -39.25 -0.33 -5.32 16 7 C 0.46 8.15 7.71 36.00 0.28 8.43 16 8 O -0.47 -10.18 14.19 -18.75 -0.27 -10.45 16 9 C -0.09 -1.51 5.05 -27.88 -0.14 -1.65 16 10 C 0.05 1.11 1.28 -92.92 -0.12 0.99 16 11 H 0.05 1.13 4.79 -51.93 -0.25 0.89 16 12 C -0.50 -12.90 6.93 -34.44 -0.24 -13.14 16 13 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 14 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 15 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 16 Si 0.87 21.62 27.04 -169.99 -4.60 17.03 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.26 -5.93 5.14 56.52 0.29 -5.63 16 20 C -0.04 -0.78 4.77 -104.63 -0.50 -1.28 16 21 C -0.10 -1.84 8.87 -39.58 -0.35 -2.19 16 22 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 23 C -0.15 -2.28 10.05 -39.59 -0.40 -2.67 16 24 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.13 -2.50 9.13 -39.58 -0.36 -2.86 16 26 C -0.17 -2.33 6.62 -26.75 -0.18 -2.51 16 27 C 0.53 7.44 8.02 -10.87 -0.09 7.35 16 28 O -0.53 -9.34 17.59 5.55 0.10 -9.25 16 29 N -0.62 -6.81 2.98 -172.71 -0.51 -7.32 16 30 C 0.10 0.80 10.96 59.85 0.66 1.45 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.71 7.49 -51.93 -0.39 0.32 16 34 H 0.10 1.57 7.80 -51.93 -0.41 1.16 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.12 2.17 7.77 -52.49 -0.41 1.76 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.11 2.03 6.95 -52.49 -0.36 1.66 16 42 H 0.12 1.52 8.11 -51.93 -0.42 1.10 16 43 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -33.31 380.00 -8.36 -41.67 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.91 Total: 3.64 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.33 Total: -9.58 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.26 Total: -33.48 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.50 Total: -25.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.60 Total: 17.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.31 -8.36 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806072074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.549 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds