Wall clock time and date at job start Tue Mar 31 2020 17:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 110.21417 * 2 1 4 4 C 1.54481 * 110.24028 * 238.07087 * 2 1 3 5 5 H 1.09003 * 110.96263 * 148.17180 * 4 2 1 6 6 O 1.45196 * 110.97342 * 24.45170 * 4 2 1 7 7 C 1.34227 * 117.00641 * 149.99463 * 6 4 2 8 8 O 1.20823 * 119.99500 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00254 * 179.72249 * 7 6 4 10 10 C 1.53003 * 109.47136 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47253 * 305.38200 * 10 9 7 12 12 C 1.50709 * 109.47142 * 65.37800 * 10 9 7 13 13 H 1.07997 * 119.99793 * 34.62049 * 12 10 9 14 14 C 1.37868 * 119.99891 * 214.62103 * 12 10 9 15 15 N 1.31515 * 119.99900 * 186.44989 * 14 12 10 16 16 Si 1.86802 * 120.00205 * 6.45147 * 14 12 10 17 17 H 1.48499 * 109.47207 * 85.01504 * 16 14 12 18 18 H 1.48505 * 109.47078 * 205.01855 * 16 14 12 19 19 H 1.48501 * 109.47145 * 325.01641 * 16 14 12 20 20 C 1.50692 * 109.47246 * 185.38054 * 10 9 7 21 21 C 1.38238 * 119.99984 * 296.35677 * 20 10 9 22 22 C 1.38239 * 120.00142 * 179.74394 * 21 20 10 23 23 C 1.38231 * 119.99725 * 0.53134 * 22 21 20 24 24 C 1.38232 * 120.00302 * 359.74526 * 23 22 21 25 25 C 1.38234 * 120.00411 * 116.63083 * 20 10 9 26 26 C 1.54623 * 101.76601 * 266.32598 * 4 2 1 27 27 C 1.51273 * 104.19638 * 335.20704 * 26 4 2 28 28 O 1.21283 * 124.94270 * 196.25069 * 27 26 4 29 29 N 1.34418 * 110.11796 * 16.25186 * 27 26 4 30 30 C 1.46501 * 124.34950 * 180.43206 * 29 27 26 31 31 H 1.09006 * 109.47479 * 181.92969 * 1 2 3 32 32 H 1.09002 * 109.47193 * 301.92545 * 1 2 3 33 33 H 1.08993 * 109.47329 * 61.92523 * 1 2 3 34 34 H 1.09004 * 109.47052 * 299.99717 * 9 7 6 35 35 H 1.08994 * 109.47522 * 60.00236 * 9 7 6 36 36 H 0.97005 * 119.99974 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.00167 * 359.97438 * 21 20 10 38 38 H 1.07999 * 120.00171 * 180.29585 * 22 21 20 39 39 H 1.08001 * 119.99985 * 179.76710 * 23 22 21 40 40 H 1.07997 * 120.00652 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.99868 * 0.02562 * 25 20 10 42 42 H 1.09003 * 110.48597 * 93.88481 * 26 4 2 43 43 H 1.09001 * 110.48863 * 216.52181 * 26 4 2 44 44 H 1.09002 * 109.46937 * 269.96938 * 30 29 27 45 45 H 1.08996 * 109.47445 * 29.96904 * 30 29 27 46 46 H 1.08997 * 109.47105 * 149.97674 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0228 0.0000 4 6 2.0645 -0.7666 -1.2301 5 1 3.0108 -0.3462 -1.5706 6 8 1.0863 -0.7740 -2.3031 7 6 1.5591 -0.8181 -3.5586 8 8 2.7509 -0.8499 -3.7544 9 6 0.6033 -0.8348 -4.7236 10 6 1.3949 -0.8866 -6.0319 11 1 2.1068 -0.0617 -6.0588 12 6 2.1384 -2.1947 -6.1178 13 1 1.6995 -3.0930 -5.7097 14 6 3.3788 -2.2444 -6.7174 15 7 3.9719 -3.4029 -6.9065 16 14 4.2173 -0.6662 -7.2614 17 1 4.9534 -0.0761 -6.1145 18 1 5.1705 -0.9654 -8.3602 19 1 3.1947 0.2974 -7.7418 20 6 0.4469 -0.7701 -7.1975 21 6 -0.5028 -1.7505 -7.4167 22 6 -1.3759 -1.6410 -8.4828 23 6 -1.2922 -0.5568 -9.3362 24 6 -0.3389 0.4206 -9.1204 25 6 0.5305 0.3141 -8.0509 26 6 2.2646 -2.1873 -0.6538 27 6 2.4538 -1.9625 0.8301 28 8 2.9125 -2.7767 1.6032 29 7 2.0396 -0.7290 1.1673 30 6 2.0909 -0.1823 2.5256 31 1 -0.3634 -1.0271 0.0346 32 1 -0.3634 0.5434 0.8722 33 1 -0.3633 0.4836 -0.9067 34 1 -0.0397 -1.7121 -4.6534 35 1 -0.0088 0.0668 -4.7044 36 1 4.8448 -3.4379 -7.3280 37 1 -0.5651 -2.6001 -6.7528 38 1 -2.1210 -2.4045 -8.6512 39 1 -1.9719 -0.4732 -10.1713 40 1 -0.2737 1.2680 -9.7868 41 1 1.2756 1.0776 -7.8826 42 1 1.3826 -2.8011 -0.8372 43 1 3.1508 -2.6528 -1.0853 44 1 1.1610 -0.4128 3.0453 45 1 2.9280 -0.6261 3.0645 46 1 2.2219 0.8987 2.4774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806072074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:28 Heat of formation + Delta-G solvation = -109.469306 kcal Electronic energy + Delta-G solvation = -28576.012853 eV Core-core repulsion = 24622.975474 eV Total energy + Delta-G solvation = -3953.037379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10163 -41.01447 -39.96683 -38.26888 -37.01203 -35.87289 -33.80106 -33.30916 -31.57915 -31.37163 -30.60396 -28.25606 -27.33539 -26.12875 -24.57260 -23.36206 -22.88613 -21.65011 -20.82459 -20.62220 -19.05942 -18.73878 -18.13263 -17.55666 -17.14426 -16.97145 -16.73148 -16.53933 -16.12096 -15.72979 -15.39120 -15.10088 -14.92307 -14.77445 -14.55748 -14.28730 -14.05256 -14.03861 -13.91358 -13.59905 -13.44541 -13.31353 -13.26042 -12.93017 -12.79711 -12.72142 -12.51351 -12.14290 -12.08523 -11.91064 -11.82017 -11.66557 -11.50547 -11.24991 -11.03696 -11.00131 -10.59833 -9.89444 -9.58844 -9.30095 -8.23267 -6.21589 0.71043 0.74683 1.31507 1.33269 1.39818 1.41823 1.45031 1.54810 1.97015 2.40726 3.08425 3.11681 3.22650 3.25807 3.50506 3.78959 4.08000 4.12426 4.20123 4.28608 4.29364 4.32565 4.34048 4.43005 4.48175 4.52951 4.61875 4.62226 4.66317 4.83117 4.84661 4.87717 4.89197 4.94850 5.03168 5.18430 5.37458 5.37853 5.41178 5.43445 5.55867 5.65643 5.80127 5.84508 5.87393 6.03041 6.32608 6.37989 6.79285 6.92609 7.01196 7.43509 8.93131 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003349 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.081005 B = 8358.823415 C = 9349.020341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.126 0.874 4 C 0.077 3.923 5 H 0.097 0.903 6 O -0.333 6.333 7 C 0.463 3.537 8 O -0.514 6.514 9 C -0.086 4.086 10 C 0.053 3.947 11 H 0.040 0.960 12 C -0.474 4.474 13 H 0.037 0.963 14 C 0.027 3.973 15 N -0.950 5.950 16 Si 0.918 3.082 17 H -0.283 1.283 18 H -0.301 1.301 19 H -0.226 1.226 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.150 4.150 26 C -0.173 4.173 27 C 0.522 3.478 28 O -0.572 6.572 29 N -0.610 5.610 30 C 0.091 3.909 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.259 0.741 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 13.791 9.637 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.144 0.856 4 C 0.020 3.980 5 H 0.115 0.885 6 O -0.250 6.250 7 C 0.306 3.694 8 O -0.400 6.400 9 C -0.124 4.124 10 C 0.034 3.966 11 H 0.058 0.942 12 C -0.512 4.512 13 H 0.056 0.944 14 C -0.170 4.170 15 N -0.591 5.591 16 Si 0.745 3.255 17 H -0.209 1.209 18 H -0.228 1.228 19 H -0.149 1.149 20 C -0.063 4.063 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.168 4.168 26 C -0.214 4.214 27 C 0.310 3.690 28 O -0.452 6.452 29 N -0.344 5.344 30 C -0.050 4.050 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.333 13.345 10.030 20.756 hybrid contribution 1.557 -0.366 -0.288 1.625 sum -10.777 12.979 9.742 19.481 Atomic orbital electron populations 1.21985 0.91742 1.02913 1.04121 1.21847 0.97030 0.96326 0.80974 0.85615 1.23391 0.93045 0.95207 0.86334 0.88523 1.86581 1.39209 1.84331 1.14836 1.24214 0.89619 0.71537 0.84020 1.90713 1.19316 1.44653 1.85365 1.21451 0.96451 1.05917 0.88542 1.18088 0.92659 0.96598 0.89229 0.94169 1.20838 1.01252 0.93434 1.35684 0.94432 1.25619 0.98063 0.97926 0.95428 1.70041 1.16501 1.26576 1.46008 0.86194 0.79485 0.82601 0.77259 1.20892 1.22844 1.14909 1.20371 0.94545 0.93685 0.97686 1.21032 0.95675 0.98037 0.98885 1.21392 0.99367 0.98791 0.94907 1.21338 0.99598 0.94595 1.00230 1.21336 0.95591 0.99994 0.97354 1.21270 1.00237 0.98421 0.96892 1.22745 1.05945 0.99432 0.93250 1.20699 0.76190 0.82035 0.90074 1.90694 1.47558 1.48962 1.58032 1.48402 1.61453 1.14246 1.10289 1.21807 1.02752 1.00811 0.79586 0.93119 0.89997 0.89452 0.87457 0.85872 0.93260 0.87088 0.84480 0.83777 0.84261 0.86917 0.86155 0.88978 0.91090 0.91771 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.93 71.98 0.64 -1.48 16 2 C 0.14 2.43 3.68 45.45 0.17 2.60 16 3 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.08 1.95 3.37 31.65 0.11 2.05 16 5 H 0.10 2.75 7.13 -2.39 -0.02 2.73 16 6 O -0.33 -9.15 8.44 -51.39 -0.43 -9.58 16 7 C 0.46 16.42 7.71 71.23 0.55 16.97 16 8 O -0.51 -23.11 14.19 21.97 0.31 -22.80 16 9 C -0.09 -2.85 5.05 29.85 0.15 -2.70 16 10 C 0.05 2.24 1.28 -12.28 -0.02 2.22 16 11 H 0.04 1.77 4.79 -2.39 -0.01 1.76 16 12 C -0.47 -25.44 6.93 25.60 0.18 -25.26 16 13 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 14 C 0.03 1.54 5.47 84.65 0.46 2.01 16 15 N -0.95 -60.42 13.96 21.44 0.30 -60.12 16 16 Si 0.92 45.65 27.04 68.60 1.85 47.51 16 17 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 19 H -0.23 -9.86 5.14 99.48 0.51 -9.35 16 20 C -0.06 -2.37 4.77 -19.87 -0.09 -2.46 16 21 C -0.12 -4.18 8.87 22.27 0.20 -3.98 16 22 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.14 -3.68 10.05 22.27 0.22 -3.46 16 24 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 25 C -0.15 -5.16 9.13 22.27 0.20 -4.95 16 26 C -0.17 -4.93 6.62 30.58 0.20 -4.73 16 27 C 0.52 15.01 8.02 87.90 0.71 15.71 16 28 O -0.57 -20.96 17.59 -3.04 -0.05 -21.01 16 29 N -0.61 -12.40 2.98 -818.93 -2.44 -14.84 16 30 C 0.09 1.26 10.96 127.77 1.40 2.66 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.20 7.49 -2.39 -0.02 1.18 16 34 H 0.11 3.36 7.80 -2.39 -0.02 3.34 16 35 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 37 H 0.11 4.02 7.77 -2.91 -0.02 4.00 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 41 H 0.11 3.78 6.95 -2.91 -0.02 3.76 16 42 H 0.12 3.27 8.11 -2.39 -0.02 3.25 16 43 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.06 1.08 7.93 -2.39 -0.02 1.06 16 46 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.72 380.00 5.85 -71.88 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.78 Total: 20.56 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.53 Total: -11.59 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.14 Total: -74.96 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.18 Total: -53.39 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.85 Total: 47.51 kcal Total: -77.72 5.85 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806072074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.593 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds