Wall clock time and date at job start Tue Mar 31 2020 17:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.28341 * 2 1 4 4 C 1.54472 * 110.24806 * 238.01886 * 2 1 3 5 5 H 1.09001 * 110.96951 * 24.57131 * 4 2 1 6 6 O 1.45202 * 110.97059 * 148.29670 * 4 2 1 7 7 C 1.34230 * 117.00034 * 209.99603 * 6 4 2 8 8 O 1.20823 * 120.00193 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99674 * 180.02562 * 7 6 4 10 10 C 1.53006 * 109.47079 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.46747 * 305.00066 * 10 9 7 12 12 C 1.50699 * 109.46914 * 65.00254 * 10 9 7 13 13 H 1.08001 * 120.00698 * 29.59001 * 12 10 9 14 14 C 1.37878 * 119.99669 * 209.59347 * 12 10 9 15 15 N 1.31516 * 119.99997 * 4.95150 * 14 12 10 16 16 Si 1.86798 * 120.00012 * 184.95135 * 14 12 10 17 17 H 1.48499 * 109.47307 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47230 * 120.00002 * 16 14 12 19 19 H 1.48503 * 109.47135 * 239.99984 * 16 14 12 20 20 C 1.50700 * 109.47154 * 184.99816 * 10 9 7 21 21 C 1.38234 * 120.00108 * 296.77453 * 20 10 9 22 22 C 1.38234 * 119.99964 * 179.76163 * 21 20 10 23 23 C 1.38241 * 120.00025 * 0.49299 * 22 21 20 24 24 C 1.38238 * 119.99402 * 359.78458 * 23 22 21 25 25 C 1.38231 * 120.00584 * 359.95697 * 24 23 22 26 26 C 1.54635 * 101.76680 * 266.41726 * 4 2 1 27 27 C 1.51286 * 104.19217 * 335.20416 * 26 4 2 28 28 O 1.21277 * 124.94026 * 196.25482 * 27 26 4 29 29 N 1.34418 * 110.11800 * 16.24853 * 27 26 4 30 30 C 1.46498 * 124.35163 * 180.42790 * 29 27 26 31 31 H 1.09001 * 109.47100 * 181.97840 * 1 2 3 32 32 H 1.08994 * 109.47636 * 301.98329 * 1 2 3 33 33 H 1.09001 * 109.47020 * 61.98197 * 1 2 3 34 34 H 1.09004 * 109.47305 * 60.00389 * 9 7 6 35 35 H 1.09006 * 109.47344 * 300.00290 * 9 7 6 36 36 H 0.96999 * 119.99788 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.00162 * 0.02562 * 21 20 10 38 38 H 1.07995 * 120.00384 * 180.25306 * 22 21 20 39 39 H 1.07999 * 120.00099 * 179.76475 * 23 22 21 40 40 H 1.08005 * 119.99288 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00188 * 180.02562 * 25 24 23 42 42 H 1.08994 * 110.48764 * 93.87895 * 26 4 2 43 43 H 1.08993 * 110.48624 * 216.52863 * 26 4 2 44 44 H 1.09003 * 109.46996 * 269.97910 * 30 29 27 45 45 H 1.09000 * 109.46773 * 29.98048 * 30 29 27 46 46 H 1.09002 * 109.46943 * 149.98135 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0646 -0.7676 -1.2293 5 1 1.3312 -0.7721 -2.0356 6 8 3.3267 -0.2100 -1.6816 7 6 3.6004 -0.3057 -2.9922 8 8 2.8114 -0.8374 -3.7369 9 6 4.8919 0.2499 -3.5347 10 6 4.9547 0.0127 -5.0450 11 1 4.8171 -1.0485 -5.2520 12 6 3.8649 0.8022 -5.7232 13 1 3.5185 1.7283 -5.2886 14 6 3.3099 0.3423 -6.8985 15 7 3.6613 -0.8314 -7.3766 16 14 2.0589 1.3863 -7.8120 17 1 1.8363 2.6537 -7.0709 18 1 2.5681 1.6912 -9.1732 19 1 0.7773 0.6437 -7.9178 20 6 6.2964 0.4568 -5.5679 21 6 6.6674 1.7855 -5.4795 22 6 7.9002 2.1920 -5.9547 23 6 8.7579 1.2716 -6.5276 24 6 8.3845 -0.0561 -6.6211 25 6 7.1539 -0.4636 -6.1411 26 6 2.2625 -2.1885 -0.6523 27 6 2.4507 -1.9633 0.8319 28 8 2.9078 -2.7777 1.6055 29 7 2.0378 -0.7291 1.1682 30 6 2.0886 -0.1819 2.5262 31 1 -0.3633 -1.0271 0.0355 32 1 -0.3634 0.5443 0.8716 33 1 -0.3633 0.4828 -0.9072 34 1 5.7329 -0.2489 -3.0530 35 1 4.9402 1.3201 -3.3331 36 1 3.2706 -1.1551 -8.2033 37 1 5.9958 2.5053 -5.0353 38 1 8.1917 3.2294 -5.8820 39 1 9.7195 1.5899 -6.9023 40 1 9.0545 -0.7751 -7.0690 41 1 6.8624 -1.5009 -6.2138 42 1 1.3801 -2.8013 -0.8361 43 1 3.1485 -2.6550 -1.0827 44 1 1.1579 -0.4111 3.0453 45 1 2.9247 -0.6264 3.0660 46 1 2.2208 0.8990 2.4776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806072077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:40 Heat of formation + Delta-G solvation = -94.454918 kcal Electronic energy + Delta-G solvation = -28482.295393 eV Core-core repulsion = 24529.909087 eV Total energy + Delta-G solvation = -3952.386306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93094 -39.51444 -38.38821 -36.93695 -35.63918 -34.09626 -32.48331 -31.55735 -30.48710 -30.05931 -29.06978 -26.69321 -26.00698 -24.95646 -23.04079 -21.77486 -21.50585 -20.58448 -19.66451 -19.26246 -17.36929 -16.96526 -16.67585 -16.08957 -15.95934 -15.73188 -15.32225 -15.10965 -14.51588 -14.18337 -13.98968 -13.91457 -13.68500 -13.52472 -13.01219 -12.80000 -12.72441 -12.66217 -12.55403 -12.33094 -12.19774 -12.05218 -11.91926 -11.72776 -11.58786 -11.17885 -10.96923 -10.85327 -10.63207 -10.39018 -10.32332 -10.14051 -9.81032 -9.67479 -9.49601 -9.14334 -8.93096 -8.45370 -8.09178 -7.69823 -6.03411 -4.04579 2.24118 2.27509 2.49739 2.79717 3.01063 3.02993 3.29632 3.37504 3.38878 4.13376 4.24546 4.42399 4.62883 4.68853 4.80860 4.98313 5.04862 5.19385 5.29845 5.34507 5.34712 5.38928 5.46775 5.52185 5.62764 5.67935 5.69213 5.79306 5.83081 5.90276 6.00552 6.04495 6.22084 6.34375 6.36005 6.44534 6.63154 6.83842 6.92507 6.92922 7.03606 7.26701 7.35859 7.44851 7.77454 7.87002 7.95949 8.05594 8.24999 8.55654 8.95521 9.57853 11.06346 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.003453 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.315418 B = 8107.063787 C = 9409.738052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.101 0.899 4 C 0.078 3.922 5 H 0.117 0.883 6 O -0.361 6.361 7 C 0.456 3.544 8 O -0.459 6.459 9 C -0.094 4.094 10 C 0.075 3.925 11 H 0.075 0.925 12 C -0.500 4.500 13 H 0.053 0.947 14 C 0.078 3.922 15 N -0.878 5.878 16 Si 0.886 3.114 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.024 4.024 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.169 4.169 27 C 0.524 3.476 28 O -0.534 6.534 29 N -0.618 5.618 30 C 0.098 3.902 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.260 0.740 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 3.492 13.032 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.119 0.881 4 C 0.021 3.979 5 H 0.135 0.865 6 O -0.280 6.280 7 C 0.297 3.703 8 O -0.341 6.341 9 C -0.132 4.132 10 C 0.056 3.944 11 H 0.093 0.907 12 C -0.537 4.537 13 H 0.071 0.929 14 C -0.126 4.126 15 N -0.515 5.515 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.025 4.025 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.209 4.209 27 C 0.312 3.688 28 O -0.411 6.411 29 N -0.352 5.352 30 C -0.044 4.044 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.541 2.782 13.137 13.516 hybrid contribution -0.831 0.631 -0.828 1.332 sum -2.372 3.413 12.309 12.992 Atomic orbital electron populations 1.22136 0.93206 1.03149 1.03327 1.21766 0.94490 0.97418 0.83478 0.88107 1.23404 0.86904 0.91406 0.96151 0.86501 1.86649 1.38123 1.74299 1.28921 1.24101 0.89946 0.77471 0.78819 1.90731 1.47750 1.38440 1.57189 1.21615 0.90214 1.01520 0.99803 1.17924 0.89435 1.00813 0.86230 0.90692 1.20742 1.18077 1.07121 1.07789 0.92853 1.24826 0.95894 0.94437 0.97398 1.69907 1.43336 1.17356 1.20862 0.86642 0.81483 0.80608 0.79869 1.19825 1.21089 1.21067 1.20620 0.94748 0.92642 0.94499 1.20958 0.95298 0.96201 1.00676 1.20988 0.95148 0.98444 1.00426 1.20825 0.99466 0.93836 1.02970 1.20994 0.97003 0.95683 1.00965 1.21094 0.93304 0.99798 0.99351 1.22778 1.06369 0.98304 0.93473 1.20790 0.76149 0.81263 0.90562 1.90708 1.45472 1.47604 1.57335 1.48205 1.62888 1.15393 1.08748 1.21522 1.02195 0.99133 0.81524 0.91795 0.91428 0.90395 0.90307 0.89246 0.93024 0.86742 0.87556 0.87718 0.87543 0.86720 0.86475 0.87052 0.92703 0.90685 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.46 37.16 0.35 -0.91 16 2 C 0.13 1.35 3.47 -67.01 -0.23 1.12 16 3 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 4 C 0.08 1.02 3.05 -25.10 -0.08 0.94 16 5 H 0.12 1.58 6.88 -51.93 -0.36 1.22 16 6 O -0.36 -5.72 10.00 -39.26 -0.39 -6.12 16 7 C 0.46 8.66 7.71 36.00 0.28 8.93 16 8 O -0.46 -10.33 14.19 -18.75 -0.27 -10.59 16 9 C -0.09 -1.75 5.06 -27.88 -0.14 -1.89 16 10 C 0.07 1.69 1.69 -92.92 -0.16 1.53 16 11 H 0.07 1.94 6.95 -51.93 -0.36 1.58 16 12 C -0.50 -12.68 6.38 -34.44 -0.22 -12.90 16 13 H 0.05 1.35 7.82 -52.49 -0.41 0.93 16 14 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 15 N -0.88 -24.70 12.85 55.43 0.71 -23.99 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 21 C -0.11 -2.19 8.86 -39.58 -0.35 -2.54 16 22 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 23 C -0.15 -2.58 10.05 -39.58 -0.40 -2.97 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 25 C -0.12 -2.39 9.67 -39.58 -0.38 -2.77 16 26 C -0.17 -2.17 6.62 -26.74 -0.18 -2.35 16 27 C 0.52 7.40 8.02 -10.86 -0.09 7.32 16 28 O -0.53 -9.36 17.59 5.56 0.10 -9.26 16 29 N -0.62 -7.00 2.97 -172.70 -0.51 -7.51 16 30 C 0.10 0.85 10.96 59.85 0.66 1.51 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.53 7.76 -51.93 -0.40 1.13 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.11 2.11 7.75 -52.49 -0.41 1.70 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.11 2.36 7.95 -52.49 -0.42 1.94 16 42 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.11 1.55 8.11 -51.93 -0.42 1.13 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -32.24 388.50 -8.83 -41.07 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.97 Total: 3.86 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.33 Total: -9.38 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.20 Total: -31.50 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.56 Total: -25.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.24 -8.83 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806072077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.387 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds