Wall clock time and date at job start Tue Mar 31 2020 17:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.28341 * 2 1 4 4 C 1.54472 * 110.24806 * 238.01886 * 2 1 3 5 5 H 1.09001 * 110.96951 * 24.57131 * 4 2 1 6 6 O 1.45202 * 110.97059 * 148.29670 * 4 2 1 7 7 C 1.34230 * 117.00034 * 209.99603 * 6 4 2 8 8 O 1.20823 * 120.00193 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99674 * 180.02562 * 7 6 4 10 10 C 1.53006 * 109.47079 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.46747 * 305.00066 * 10 9 7 12 12 C 1.50699 * 109.46914 * 65.00254 * 10 9 7 13 13 H 1.08001 * 120.00698 * 29.59001 * 12 10 9 14 14 C 1.37878 * 119.99669 * 209.59347 * 12 10 9 15 15 N 1.31516 * 119.99997 * 4.95150 * 14 12 10 16 16 Si 1.86798 * 120.00012 * 184.95135 * 14 12 10 17 17 H 1.48499 * 109.47307 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47230 * 120.00002 * 16 14 12 19 19 H 1.48503 * 109.47135 * 239.99984 * 16 14 12 20 20 C 1.50700 * 109.47154 * 184.99816 * 10 9 7 21 21 C 1.38234 * 120.00108 * 296.77453 * 20 10 9 22 22 C 1.38234 * 119.99964 * 179.76163 * 21 20 10 23 23 C 1.38241 * 120.00025 * 0.49299 * 22 21 20 24 24 C 1.38238 * 119.99402 * 359.78458 * 23 22 21 25 25 C 1.38231 * 120.00584 * 359.95697 * 24 23 22 26 26 C 1.54635 * 101.76680 * 266.41726 * 4 2 1 27 27 C 1.51286 * 104.19217 * 335.20416 * 26 4 2 28 28 O 1.21277 * 124.94026 * 196.25482 * 27 26 4 29 29 N 1.34418 * 110.11800 * 16.24853 * 27 26 4 30 30 C 1.46498 * 124.35163 * 180.42790 * 29 27 26 31 31 H 1.09001 * 109.47100 * 181.97840 * 1 2 3 32 32 H 1.08994 * 109.47636 * 301.98329 * 1 2 3 33 33 H 1.09001 * 109.47020 * 61.98197 * 1 2 3 34 34 H 1.09004 * 109.47305 * 60.00389 * 9 7 6 35 35 H 1.09006 * 109.47344 * 300.00290 * 9 7 6 36 36 H 0.96999 * 119.99788 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.00162 * 0.02562 * 21 20 10 38 38 H 1.07995 * 120.00384 * 180.25306 * 22 21 20 39 39 H 1.07999 * 120.00099 * 179.76475 * 23 22 21 40 40 H 1.08005 * 119.99288 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00188 * 180.02562 * 25 24 23 42 42 H 1.08994 * 110.48764 * 93.87895 * 26 4 2 43 43 H 1.08993 * 110.48624 * 216.52863 * 26 4 2 44 44 H 1.09003 * 109.46996 * 269.97910 * 30 29 27 45 45 H 1.09000 * 109.46773 * 29.98048 * 30 29 27 46 46 H 1.09002 * 109.46943 * 149.98135 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0646 -0.7676 -1.2293 5 1 1.3312 -0.7721 -2.0356 6 8 3.3267 -0.2100 -1.6816 7 6 3.6004 -0.3057 -2.9922 8 8 2.8114 -0.8374 -3.7369 9 6 4.8919 0.2499 -3.5347 10 6 4.9547 0.0127 -5.0450 11 1 4.8171 -1.0485 -5.2520 12 6 3.8649 0.8022 -5.7232 13 1 3.5185 1.7283 -5.2886 14 6 3.3099 0.3423 -6.8985 15 7 3.6613 -0.8314 -7.3766 16 14 2.0589 1.3863 -7.8120 17 1 1.8363 2.6537 -7.0709 18 1 2.5681 1.6912 -9.1732 19 1 0.7773 0.6437 -7.9178 20 6 6.2964 0.4568 -5.5679 21 6 6.6674 1.7855 -5.4795 22 6 7.9002 2.1920 -5.9547 23 6 8.7579 1.2716 -6.5276 24 6 8.3845 -0.0561 -6.6211 25 6 7.1539 -0.4636 -6.1411 26 6 2.2625 -2.1885 -0.6523 27 6 2.4507 -1.9633 0.8319 28 8 2.9078 -2.7777 1.6055 29 7 2.0378 -0.7291 1.1682 30 6 2.0886 -0.1819 2.5262 31 1 -0.3633 -1.0271 0.0355 32 1 -0.3634 0.5443 0.8716 33 1 -0.3633 0.4828 -0.9072 34 1 5.7329 -0.2489 -3.0530 35 1 4.9402 1.3201 -3.3331 36 1 3.2706 -1.1551 -8.2033 37 1 5.9958 2.5053 -5.0353 38 1 8.1917 3.2294 -5.8820 39 1 9.7195 1.5899 -6.9023 40 1 9.0545 -0.7751 -7.0690 41 1 6.8624 -1.5009 -6.2138 42 1 1.3801 -2.8013 -0.8361 43 1 3.1485 -2.6550 -1.0827 44 1 1.1579 -0.4111 3.0453 45 1 2.9247 -0.6264 3.0660 46 1 2.2208 0.8990 2.4776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806072077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:39 Heat of formation + Delta-G solvation = -111.444172 kcal Electronic energy + Delta-G solvation = -28483.032102 eV Core-core repulsion = 24529.909087 eV Total energy + Delta-G solvation = -3953.123016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07223 -40.89802 -39.84781 -38.16454 -36.95795 -35.80631 -33.58723 -33.27984 -31.49898 -31.36248 -30.53117 -27.92435 -27.34428 -26.11851 -24.61408 -23.17839 -22.66088 -21.91815 -21.00487 -20.52606 -18.75513 -18.52388 -18.08272 -17.41407 -17.08682 -17.05227 -16.65946 -16.48276 -16.13401 -15.63890 -15.47279 -15.08047 -14.71743 -14.54659 -14.39733 -14.11193 -13.96963 -13.80008 -13.61631 -13.53676 -13.48263 -13.27365 -13.19959 -12.86028 -12.84048 -12.80078 -12.55358 -12.43218 -12.22415 -11.84387 -11.71441 -11.59425 -11.35338 -11.20217 -10.94878 -10.92942 -10.46774 -9.86016 -9.53678 -9.21498 -8.04016 -6.08423 0.78513 0.82478 1.38734 1.39807 1.42007 1.50012 1.50371 1.70474 1.95141 2.47135 3.13063 3.18188 3.23381 3.35544 3.54859 3.88218 4.12635 4.18674 4.24925 4.33576 4.34201 4.36027 4.38843 4.51614 4.53237 4.57705 4.61363 4.63273 4.73056 4.81020 4.83257 4.87291 4.91699 4.97000 5.13815 5.24770 5.37456 5.47937 5.48696 5.57919 5.63890 5.78423 5.84542 5.94153 5.94742 6.15641 6.38671 6.46151 6.99173 6.99944 7.07407 7.55357 9.05447 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.003453 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.315418 B = 8107.063787 C = 9409.738052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 H 0.116 0.884 4 C 0.069 3.931 5 H 0.114 0.886 6 O -0.354 6.354 7 C 0.463 3.537 8 O -0.502 6.502 9 C -0.092 4.092 10 C 0.078 3.922 11 H 0.030 0.970 12 C -0.491 4.491 13 H 0.053 0.947 14 C 0.025 3.975 15 N -0.915 5.915 16 Si 0.935 3.065 17 H -0.261 1.261 18 H -0.286 1.286 19 H -0.290 1.290 20 C -0.048 4.048 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.168 4.168 27 C 0.518 3.482 28 O -0.576 6.576 29 N -0.611 5.611 30 C 0.091 3.909 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.254 0.746 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 6.399 14.045 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.133 0.867 4 C 0.013 3.987 5 H 0.131 0.869 6 O -0.273 6.273 7 C 0.306 3.694 8 O -0.388 6.388 9 C -0.129 4.129 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.529 4.529 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.555 5.555 16 Si 0.763 3.237 17 H -0.185 1.185 18 H -0.212 1.212 19 H -0.216 1.216 20 C -0.048 4.048 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.209 4.209 27 C 0.307 3.693 28 O -0.457 6.457 29 N -0.344 5.344 30 C -0.049 4.049 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.063 5.752 14.185 15.344 hybrid contribution -0.912 -0.250 -1.048 1.412 sum -1.975 5.502 13.137 14.379 Atomic orbital electron populations 1.22127 0.90889 1.03569 1.04671 1.21892 0.96021 0.97181 0.81326 0.86658 1.23719 0.85503 0.92142 0.97299 0.86860 1.86610 1.39684 1.73999 1.26978 1.24098 0.89489 0.76400 0.79437 1.90721 1.49093 1.40429 1.58520 1.21524 0.90947 1.02993 0.97441 1.17708 0.90016 0.97717 0.88650 0.95166 1.21030 1.18053 1.06665 1.07137 0.92830 1.25500 0.97886 0.95367 0.98673 1.70055 1.45130 1.19029 1.21264 0.85851 0.79356 0.79713 0.78826 1.18460 1.21240 1.21633 1.20476 0.94421 0.93940 0.95972 1.21082 0.96631 0.95217 1.01361 1.21389 0.93976 1.00324 0.98818 1.21281 1.00751 0.92967 1.01456 1.21287 0.96129 0.97172 1.00242 1.21118 0.94969 0.99080 1.00931 1.22786 1.06547 0.98514 0.93003 1.20909 0.76004 0.81861 0.90562 1.90681 1.47682 1.49070 1.58257 1.48342 1.61534 1.14383 1.10120 1.21767 1.02661 1.00559 0.79932 0.91966 0.89271 0.89779 0.88370 0.87184 0.93664 0.86164 0.84076 0.83975 0.85165 0.88682 0.84548 0.88731 0.90962 0.91936 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.46 71.98 0.68 -1.34 16 2 C 0.14 2.54 3.47 45.44 0.16 2.70 16 3 H 0.12 1.85 8.11 -2.39 -0.02 1.83 16 4 C 0.07 1.77 3.05 31.65 0.10 1.87 16 5 H 0.11 3.06 6.88 -2.39 -0.02 3.04 16 6 O -0.35 -11.11 10.00 -51.41 -0.51 -11.62 16 7 C 0.46 17.86 7.71 71.23 0.55 18.41 16 8 O -0.50 -23.45 14.19 21.97 0.31 -23.13 16 9 C -0.09 -3.43 5.06 29.85 0.15 -3.28 16 10 C 0.08 3.64 1.69 -12.28 -0.02 3.62 16 11 H 0.03 1.67 6.95 -2.39 -0.02 1.65 16 12 C -0.49 -25.33 6.38 25.60 0.16 -25.16 16 13 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 14 C 0.02 1.37 5.45 84.65 0.46 1.83 16 15 N -0.92 -53.85 12.85 21.45 0.28 -53.57 16 16 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 C -0.05 -2.03 4.77 -19.87 -0.09 -2.13 16 21 C -0.12 -4.64 8.86 22.27 0.20 -4.44 16 22 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 23 C -0.15 -4.43 10.05 22.27 0.22 -4.21 16 24 C -0.13 -4.46 10.05 22.27 0.22 -4.24 16 25 C -0.14 -5.94 9.67 22.27 0.22 -5.73 16 26 C -0.17 -4.38 6.62 30.59 0.20 -4.18 16 27 C 0.52 14.53 8.02 87.90 0.71 15.24 16 28 O -0.58 -20.56 17.59 -3.02 -0.05 -20.61 16 29 N -0.61 -12.80 2.97 -818.90 -2.43 -15.24 16 30 C 0.09 1.37 10.96 127.77 1.40 2.77 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.11 3.64 7.76 -2.38 -0.02 3.63 16 36 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.12 4.22 7.75 -2.91 -0.02 4.20 16 38 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.09 4.20 7.95 -2.91 -0.02 4.17 16 42 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.09 2.79 8.11 -2.39 -0.02 2.77 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.12 7.93 -2.39 -0.02 1.11 16 46 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.12 388.50 6.11 -67.00 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.97 Total: 23.32 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.54 Total: -12.01 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -2.16 Total: -68.81 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.26 Total: -55.37 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.12 6.11 -67.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806072077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.441 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds