Wall clock time and date at job start Tue Mar 31 2020 16:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 N 1.46494 * 109.47179 * 120.00766 * 2 1 3 5 5 C 1.46507 * 119.99825 * 303.61913 * 4 2 1 6 6 C 1.50705 * 109.47076 * 270.00243 * 5 4 2 7 7 H 1.07995 * 120.00256 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00180 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47134 * 60.00393 * 10 8 6 12 12 H 1.48502 * 109.47208 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47394 * 300.00131 * 10 8 6 14 14 C 1.34775 * 120.00346 * 123.62026 * 4 2 1 15 15 O 1.21287 * 120.00072 * 184.30698 * 14 4 2 16 16 C 1.50697 * 120.00100 * 4.31330 * 14 4 2 17 17 H 1.08999 * 110.62554 * 321.12959 * 16 14 4 18 18 C 1.54806 * 110.67555 * 197.83055 * 16 14 4 19 19 C 1.54263 * 102.21843 * 266.78371 * 18 16 14 20 20 H 1.09006 * 110.02497 * 104.17524 * 19 18 16 21 21 C 1.50699 * 110.02703 * 225.53666 * 19 18 16 22 22 C 1.38234 * 120.00499 * 264.33356 * 21 19 18 23 23 C 1.38229 * 120.00309 * 180.02562 * 22 21 19 24 24 C 1.38242 * 119.99929 * 359.97438 * 23 22 21 25 25 C 1.38231 * 119.99725 * 0.26532 * 24 23 22 26 26 C 1.38232 * 120.00303 * 359.48077 * 25 24 23 27 27 O 1.45367 * 106.67084 * 344.85873 * 19 18 16 28 28 C 1.34001 * 111.49850 * 357.70154 * 27 19 18 29 29 O 1.20825 * 125.69968 * 199.68843 * 28 27 19 30 30 H 1.09000 * 109.47190 * 299.99689 * 1 2 3 31 31 H 1.09001 * 109.47133 * 59.99490 * 1 2 3 32 32 H 1.09001 * 109.47541 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46905 * 240.00756 * 2 1 3 34 34 H 1.08998 * 109.47439 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47471 * 300.00303 * 3 2 1 36 36 H 1.09003 * 109.46551 * 60.00540 * 3 2 1 37 37 H 1.09000 * 109.46980 * 30.00100 * 5 4 2 38 38 H 1.08997 * 109.47207 * 149.99722 * 5 4 2 39 39 H 0.97007 * 119.99687 * 179.97438 * 9 8 6 40 40 H 1.08999 * 110.84224 * 148.61208 * 18 16 14 41 41 H 1.08994 * 110.88325 * 24.97446 * 18 16 14 42 42 H 1.07997 * 119.99704 * 359.97438 * 22 21 19 43 43 H 1.07999 * 119.99972 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.99570 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99920 * 179.72643 * 25 24 23 46 46 H 1.08003 * 120.00318 * 180.23308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.6002 -0.2383 2.5253 6 6 2.5723 0.7954 3.0329 7 1 3.4168 1.0865 2.4260 8 6 2.3828 1.3702 4.2717 9 7 1.3541 1.0160 5.0106 10 14 3.5882 2.6509 4.9012 11 1 3.6135 3.8070 3.9696 12 1 3.1642 3.1096 6.2485 13 1 4.9452 2.0539 4.9865 14 6 2.8522 -1.7424 1.0736 15 8 3.1945 -2.3627 2.0581 16 6 3.3596 -2.1475 -0.2863 17 1 2.5732 -2.0485 -1.0346 18 6 3.9126 -3.5931 -0.2551 19 6 5.4128 -3.3628 0.0206 20 1 5.6421 -3.5998 1.0596 21 6 6.2440 -4.2197 -0.8992 22 6 6.7105 -5.4470 -0.4668 23 6 7.4733 -6.2327 -1.3103 24 6 7.7693 -5.7913 -2.5865 25 6 7.3069 -4.5619 -3.0171 26 6 6.5397 -3.7785 -2.1755 27 8 5.6733 -1.9564 -0.2385 28 6 4.5739 -1.3251 -0.6726 29 8 4.5535 -0.2763 -1.2720 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.6038 0.1995 2.4633 38 1 1.5822 -1.0870 3.2090 39 1 1.2211 1.4202 5.8824 40 1 3.7658 -4.0853 -1.2165 41 1 3.4539 -4.1672 0.5499 42 1 6.4797 -5.7916 0.5303 43 1 7.8381 -7.1914 -0.9723 44 1 8.3656 -6.4051 -3.2454 45 1 7.5418 -4.2151 -4.0127 46 1 6.1753 -2.8195 -2.5133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813431795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:41 Heat of formation + Delta-G solvation = -86.879443 kcal Electronic energy + Delta-G solvation = -29304.030295 eV Core-core repulsion = 25351.972486 eV Total energy + Delta-G solvation = -3952.057809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53364 -39.39938 -38.76264 -37.43465 -36.04753 -33.38058 -32.80700 -31.78322 -31.12979 -30.89832 -28.14702 -26.86431 -26.66303 -23.82065 -22.86685 -22.73394 -21.98932 -21.37058 -20.78780 -18.57253 -17.76573 -17.20576 -16.84763 -16.47654 -16.08454 -15.97607 -15.29015 -15.18898 -14.69543 -14.27276 -14.11742 -13.93604 -13.62383 -13.52812 -13.41538 -13.30567 -13.18562 -12.56637 -12.45705 -12.30355 -12.20328 -11.94626 -11.61270 -11.55938 -11.45971 -11.30389 -11.15269 -10.91768 -10.82433 -10.55651 -10.54300 -10.35480 -10.18579 -10.02155 -9.58481 -9.16663 -9.13061 -9.00590 -8.42656 -7.76754 -6.05258 -4.08730 1.01565 1.15858 1.98801 2.96130 3.17701 3.33585 3.37083 3.41609 3.56705 3.69616 4.10566 4.17449 4.25548 4.44835 4.65540 4.71034 4.74539 4.83256 4.89377 5.05843 5.14078 5.24544 5.29493 5.35338 5.36909 5.56330 5.61411 5.67466 5.70568 5.76100 5.83019 6.03624 6.18352 6.19622 6.26097 6.31032 6.31710 6.43327 6.64817 6.71824 6.78119 7.00586 7.04417 7.38730 7.46232 7.47003 7.90968 8.21416 8.28000 8.76176 8.97283 9.55584 11.02835 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.003427 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.880819 B = 8167.810853 C = 8709.532289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.156 4.156 4 N -0.580 5.580 5 C 0.245 3.755 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.522 3.478 15 O -0.529 6.529 16 C -0.188 4.188 17 H 0.133 0.867 18 C -0.125 4.125 19 C 0.130 3.870 20 H 0.123 0.877 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.100 4.100 27 O -0.331 6.331 28 C 0.503 3.497 29 O -0.437 6.437 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -12.996 -16.347 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.311 5.311 5 C 0.127 3.873 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.306 3.694 15 O -0.407 6.407 16 C -0.211 4.211 17 H 0.151 0.849 18 C -0.163 4.163 19 C 0.075 3.925 20 H 0.141 0.859 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.118 4.118 27 O -0.247 6.247 28 C 0.341 3.659 29 O -0.319 6.319 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.788 -12.664 -15.872 21.114 hybrid contribution 0.532 0.801 0.365 1.029 sum 6.320 -11.862 -15.507 20.521 Atomic orbital electron populations 1.22159 0.95182 1.01838 1.02761 1.21114 0.94241 0.94626 0.87469 1.22116 1.01907 0.95206 1.02144 1.48348 1.44749 1.28571 1.09422 1.19342 0.95672 0.95702 0.76609 1.21388 1.10638 1.22029 1.02125 0.92385 1.24899 0.95572 0.97073 0.96398 1.69922 1.28641 1.43191 1.11641 0.86603 0.81583 0.81650 0.77917 1.20152 1.21193 1.20189 1.19275 0.80408 0.81696 0.88028 1.90683 1.58062 1.53572 1.38348 1.23081 0.99846 0.97060 1.01111 0.84947 1.22957 0.93120 0.95060 1.05166 1.22309 0.94243 0.76058 0.99898 0.85906 1.19913 0.99677 0.95419 0.94811 1.20953 0.97229 0.93665 1.00172 1.21127 0.98621 0.99912 0.94096 1.21208 0.99834 0.96303 0.96262 1.21149 0.98093 0.94664 0.99822 1.20993 0.97989 0.99608 0.93175 1.86840 1.37351 1.23688 1.76812 1.22509 0.84082 0.84467 0.74845 1.90727 1.85808 1.20492 1.34917 0.91014 0.92047 0.92882 0.90715 0.92314 0.93138 0.90226 0.94331 0.93759 0.92688 0.88793 0.86678 0.85328 0.85707 0.85996 0.85857 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 37.16 0.34 -2.05 16 2 C 0.13 2.21 3.14 -67.94 -0.21 2.00 16 3 C -0.16 -2.83 8.57 37.16 0.32 -2.51 16 4 N -0.58 -12.11 2.39 -167.47 -0.40 -12.51 16 5 C 0.25 6.22 4.72 -5.19 -0.02 6.20 16 6 C -0.52 -14.59 7.84 -34.44 -0.27 -14.86 16 7 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 10 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.52 10.45 6.90 -10.99 -0.08 10.38 16 15 O -0.53 -12.27 15.32 5.55 0.09 -12.19 16 16 C -0.19 -2.81 2.43 -91.50 -0.22 -3.03 16 17 H 0.13 1.62 6.35 -51.93 -0.33 1.29 16 18 C -0.13 -1.49 5.90 -25.12 -0.15 -1.64 16 19 C 0.13 1.69 3.82 -27.22 -0.10 1.59 16 20 H 0.12 1.61 8.07 -51.93 -0.42 1.19 16 21 C -0.10 -1.09 4.87 -104.62 -0.51 -1.60 16 22 C -0.10 -0.97 9.69 -39.59 -0.38 -1.35 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 26 C -0.10 -1.09 9.36 -39.58 -0.37 -1.46 16 27 O -0.33 -5.46 9.76 -38.27 -0.37 -5.84 16 28 C 0.50 8.52 7.81 36.48 0.29 8.81 16 29 O -0.44 -8.23 17.27 -18.37 -0.32 -8.55 16 30 H 0.07 1.21 6.55 -51.93 -0.34 0.87 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.11 5.24 -51.93 -0.27 0.84 16 34 H 0.06 1.18 7.50 -51.93 -0.39 0.79 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 37 H 0.04 0.99 6.24 -51.93 -0.32 0.66 16 38 H 0.04 1.27 7.37 -51.93 -0.38 0.88 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 0.86 7.79 -51.93 -0.40 0.45 16 41 H 0.11 1.39 7.33 -51.93 -0.38 1.01 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.12 1.38 7.49 -52.48 -0.39 0.99 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -33.29 378.08 -8.75 -42.04 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.49 Total: 1.88 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.67 Total: -2.10 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.34 Total: -37.99 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.61 Total: -26.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.29 -8.75 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.842 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds