Wall clock time and date at job start Tue Mar 31 2020 16:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 N 1.46494 * 109.47179 * 120.00766 * 2 1 3 5 5 C 1.46507 * 119.99825 * 303.61913 * 4 2 1 6 6 C 1.50705 * 109.47076 * 270.00243 * 5 4 2 7 7 H 1.07995 * 120.00256 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00180 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99891 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47134 * 60.00393 * 10 8 6 12 12 H 1.48502 * 109.47208 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47394 * 300.00131 * 10 8 6 14 14 C 1.34775 * 120.00346 * 123.62026 * 4 2 1 15 15 O 1.21287 * 120.00072 * 184.30698 * 14 4 2 16 16 C 1.50697 * 120.00100 * 4.31330 * 14 4 2 17 17 H 1.08999 * 110.62554 * 321.12959 * 16 14 4 18 18 C 1.54806 * 110.67555 * 197.83055 * 16 14 4 19 19 C 1.54263 * 102.21843 * 266.78371 * 18 16 14 20 20 H 1.09006 * 110.02497 * 104.17524 * 19 18 16 21 21 C 1.50699 * 110.02703 * 225.53666 * 19 18 16 22 22 C 1.38234 * 120.00499 * 264.33356 * 21 19 18 23 23 C 1.38229 * 120.00309 * 180.02562 * 22 21 19 24 24 C 1.38242 * 119.99929 * 359.97438 * 23 22 21 25 25 C 1.38231 * 119.99725 * 0.26532 * 24 23 22 26 26 C 1.38232 * 120.00303 * 359.48077 * 25 24 23 27 27 O 1.45367 * 106.67084 * 344.85873 * 19 18 16 28 28 C 1.34001 * 111.49850 * 357.70154 * 27 19 18 29 29 O 1.20825 * 125.69968 * 199.68843 * 28 27 19 30 30 H 1.09000 * 109.47190 * 299.99689 * 1 2 3 31 31 H 1.09001 * 109.47133 * 59.99490 * 1 2 3 32 32 H 1.09001 * 109.47541 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46905 * 240.00756 * 2 1 3 34 34 H 1.08998 * 109.47439 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47471 * 300.00303 * 3 2 1 36 36 H 1.09003 * 109.46551 * 60.00540 * 3 2 1 37 37 H 1.09000 * 109.46980 * 30.00100 * 5 4 2 38 38 H 1.08997 * 109.47207 * 149.99722 * 5 4 2 39 39 H 0.97007 * 119.99687 * 179.97438 * 9 8 6 40 40 H 1.08999 * 110.84224 * 148.61208 * 18 16 14 41 41 H 1.08994 * 110.88325 * 24.97446 * 18 16 14 42 42 H 1.07997 * 119.99704 * 359.97438 * 22 21 19 43 43 H 1.07999 * 119.99972 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.99570 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99920 * 179.72643 * 25 24 23 46 46 H 1.08003 * 120.00318 * 180.23308 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.6002 -0.2383 2.5253 6 6 2.5723 0.7954 3.0329 7 1 3.4168 1.0865 2.4260 8 6 2.3828 1.3702 4.2717 9 7 1.3541 1.0160 5.0106 10 14 3.5882 2.6509 4.9012 11 1 3.6135 3.8070 3.9696 12 1 3.1642 3.1096 6.2485 13 1 4.9452 2.0539 4.9865 14 6 2.8522 -1.7424 1.0736 15 8 3.1945 -2.3627 2.0581 16 6 3.3596 -2.1475 -0.2863 17 1 2.5732 -2.0485 -1.0346 18 6 3.9126 -3.5931 -0.2551 19 6 5.4128 -3.3628 0.0206 20 1 5.6421 -3.5998 1.0596 21 6 6.2440 -4.2197 -0.8992 22 6 6.7105 -5.4470 -0.4668 23 6 7.4733 -6.2327 -1.3103 24 6 7.7693 -5.7913 -2.5865 25 6 7.3069 -4.5619 -3.0171 26 6 6.5397 -3.7785 -2.1755 27 8 5.6733 -1.9564 -0.2385 28 6 4.5739 -1.3251 -0.6726 29 8 4.5535 -0.2763 -1.2720 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.6038 0.1995 2.4633 38 1 1.5822 -1.0870 3.2090 39 1 1.2211 1.4202 5.8824 40 1 3.7658 -4.0853 -1.2165 41 1 3.4539 -4.1672 0.5499 42 1 6.4797 -5.7916 0.5303 43 1 7.8381 -7.1914 -0.9723 44 1 8.3656 -6.4051 -3.2454 45 1 7.5418 -4.2151 -4.0127 46 1 6.1753 -2.8195 -2.5133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813431795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:40 Heat of formation + Delta-G solvation = -105.129030 kcal Electronic energy + Delta-G solvation = -29304.821657 eV Core-core repulsion = 25351.972486 eV Total energy + Delta-G solvation = -3952.849170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78354 -40.60325 -39.95700 -38.69334 -37.64052 -35.05926 -34.35210 -32.80121 -32.51208 -31.81235 -29.74533 -28.28148 -27.99560 -25.46937 -24.02747 -23.57152 -23.37885 -22.65609 -21.88369 -20.01054 -19.03267 -18.65091 -18.36843 -18.03179 -17.47317 -16.99498 -16.81966 -16.27088 -16.12735 -15.68583 -15.51090 -15.02622 -14.93620 -14.76449 -14.59759 -14.26329 -14.26105 -14.02353 -13.98223 -13.69535 -13.40893 -13.26185 -13.03977 -13.00828 -12.83371 -12.71781 -12.53009 -12.37343 -12.27894 -12.11902 -11.97613 -11.71057 -11.66566 -11.55527 -11.43420 -10.76885 -10.63434 -9.85690 -9.73872 -9.54259 -8.23769 -6.34993 0.27885 0.46729 0.64461 1.33110 1.35757 1.42740 1.50830 1.96507 2.16766 2.38279 2.73731 2.89731 3.06081 3.09480 3.28423 3.43578 3.75496 3.83870 3.91658 4.10107 4.13377 4.20673 4.24173 4.30853 4.40016 4.57368 4.64336 4.71976 4.76898 4.83458 4.84792 4.96434 4.99296 4.99777 5.10442 5.12929 5.18634 5.39851 5.47785 5.50552 5.53246 5.57059 5.59818 5.66403 5.79079 6.05509 6.06055 6.13066 6.60389 6.72455 7.15547 7.35614 8.83242 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.003427 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.880819 B = 8167.810853 C = 8709.532289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 C -0.149 4.149 4 N -0.588 5.588 5 C 0.264 3.736 6 C -0.533 4.533 7 H 0.044 0.956 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.281 1.281 14 C 0.513 3.487 15 O -0.570 6.570 16 C -0.175 4.175 17 H 0.167 0.833 18 C -0.113 4.113 19 C 0.126 3.874 20 H 0.113 0.887 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.116 4.116 27 O -0.350 6.350 28 C 0.500 3.500 29 O -0.461 6.461 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -14.255 -18.745 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 C -0.207 4.207 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.571 4.571 7 H 0.062 0.938 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.779 3.221 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.207 1.207 14 C 0.300 3.700 15 O -0.450 6.450 16 C -0.197 4.197 17 H 0.185 0.815 18 C -0.151 4.151 19 C 0.071 3.929 20 H 0.131 0.869 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.135 4.135 27 O -0.267 6.267 28 C 0.340 3.660 29 O -0.345 6.345 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.159 0.841 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.368 -13.929 -18.300 23.864 hybrid contribution 0.417 1.132 1.095 1.629 sum 6.785 -12.798 -17.205 22.491 Atomic orbital electron populations 1.22112 0.93130 1.02830 1.03149 1.21449 0.95889 0.93813 0.86754 1.22040 1.00170 0.96192 1.02342 1.48368 1.45207 1.29214 1.08991 1.18763 0.95047 0.93381 0.78478 1.21568 1.10590 1.22625 1.02343 0.93764 1.25671 0.97188 0.98986 0.96634 1.70016 1.30003 1.44257 1.12019 0.85679 0.78982 0.79489 0.77975 1.19060 1.19929 1.20703 1.20061 0.79447 0.80817 0.89705 1.90655 1.59103 1.54797 1.40409 1.23021 0.99932 0.98445 0.98316 0.81534 1.23036 0.91827 0.93132 1.07066 1.22480 0.95619 0.74630 1.00157 0.86908 1.19781 1.00745 0.95904 0.94678 1.21165 0.97304 0.93253 1.01033 1.21478 0.97647 1.00637 0.93937 1.21582 0.99169 0.96004 0.96576 1.21406 0.97498 0.94907 1.00393 1.21011 0.99197 0.99662 0.93593 1.86812 1.37813 1.25602 1.76469 1.22765 0.84697 0.84187 0.74370 1.90699 1.86285 1.21350 1.36175 0.93699 0.88485 0.91627 0.87691 0.94848 0.89554 0.93307 0.94828 0.97772 0.92402 0.85169 0.86810 0.84294 0.83159 0.83258 0.84112 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.10 71.98 0.66 -3.65 16 2 C 0.12 4.09 3.14 44.99 0.14 4.23 16 3 C -0.15 -5.39 8.57 71.98 0.62 -4.77 16 4 N -0.59 -24.98 2.39 -802.14 -1.92 -26.90 16 5 C 0.26 14.00 4.72 85.63 0.40 14.40 16 6 C -0.53 -30.85 7.84 25.60 0.20 -30.65 16 7 H 0.04 2.63 7.60 -2.91 -0.02 2.61 16 8 C 0.01 0.85 5.46 84.65 0.46 1.31 16 9 N -0.92 -55.49 13.29 21.45 0.28 -55.21 16 10 Si 0.95 46.10 29.54 68.60 2.03 48.13 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 14 C 0.51 20.86 6.90 87.66 0.60 21.46 16 15 O -0.57 -27.43 15.32 -3.05 -0.05 -27.47 16 16 C -0.17 -5.04 2.43 -11.36 -0.03 -5.06 16 17 H 0.17 3.58 6.35 -2.39 -0.02 3.56 16 18 C -0.11 -2.54 5.90 31.64 0.19 -2.35 16 19 C 0.13 3.26 3.82 30.28 0.12 3.37 16 20 H 0.11 3.07 8.07 -2.38 -0.02 3.05 16 21 C -0.11 -2.36 4.87 -19.86 -0.10 -2.46 16 22 C -0.11 -1.89 9.69 22.27 0.22 -1.67 16 23 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 24 C -0.12 -1.52 10.05 22.27 0.22 -1.30 16 25 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 26 C -0.12 -2.42 9.36 22.27 0.21 -2.21 16 27 O -0.35 -11.77 9.76 -49.60 -0.48 -12.26 16 28 C 0.50 16.89 7.81 71.54 0.56 17.45 16 29 O -0.46 -17.30 17.27 21.61 0.37 -16.93 16 30 H 0.04 1.50 6.55 -2.39 -0.02 1.48 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 2.85 5.24 -2.39 -0.01 2.84 16 34 H 0.03 1.35 7.50 -2.39 -0.02 1.33 16 35 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.04 6.92 -2.39 -0.02 2.02 16 37 H 0.03 1.80 6.24 -2.39 -0.01 1.79 16 38 H 0.00 0.25 7.37 -2.39 -0.02 0.24 16 39 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 40 H 0.13 2.00 7.79 -2.39 -0.02 1.98 16 41 H 0.11 2.65 7.33 -2.39 -0.02 2.63 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.11 2.46 7.49 -2.91 -0.02 2.44 16 Total: -1.00 -76.14 378.08 6.14 -70.00 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.99 Total: 15.74 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.92 Total: 4.91 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.63 Total: -82.10 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.16 Total: -56.66 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.14 6.14 -70.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.134 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds