Wall clock time and date at job start Tue Mar 31 2020 16:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47789 * 2 1 4 4 N 1.46501 * 109.46868 * 119.99906 * 2 1 3 5 5 C 1.46512 * 120.00104 * 114.20188 * 4 2 1 6 6 C 1.50703 * 109.46870 * 275.66248 * 5 4 2 7 7 H 1.08000 * 119.99598 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99643 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99960 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47068 * 89.99730 * 10 8 6 12 12 H 1.48498 * 109.47401 * 209.99775 * 10 8 6 13 13 H 1.48502 * 109.47148 * 330.00158 * 10 8 6 14 14 C 1.34777 * 120.00380 * 294.19934 * 4 2 1 15 15 O 1.21290 * 119.99421 * 4.48473 * 14 4 2 16 16 C 1.50694 * 120.00664 * 184.48142 * 14 4 2 17 17 H 1.09005 * 110.32769 * 307.02394 * 16 14 4 18 18 C 1.54491 * 110.36965 * 184.77825 * 16 14 4 19 19 C 1.54573 * 102.14567 * 225.82068 * 18 16 14 20 20 H 1.09007 * 110.43748 * 267.98806 * 19 18 16 21 21 C 1.50695 * 110.44111 * 145.59090 * 19 18 16 22 22 C 1.38227 * 120.00015 * 279.72772 * 21 19 18 23 23 C 1.38245 * 120.00044 * 179.76525 * 22 21 19 24 24 C 1.38237 * 119.99664 * 0.48385 * 23 22 21 25 25 C 1.38232 * 119.99874 * 359.79027 * 24 23 22 26 26 C 1.38228 * 120.00504 * 359.95716 * 25 24 23 27 27 O 1.45835 * 104.44499 * 26.85124 * 19 18 16 28 28 C 1.34318 * 109.91801 * 329.32334 * 27 19 18 29 29 O 1.20828 * 125.22796 * 200.92179 * 28 27 19 30 30 H 1.09001 * 109.46911 * 300.51164 * 1 2 3 31 31 H 1.09002 * 109.46767 * 60.50596 * 1 2 3 32 32 H 1.08998 * 109.47382 * 180.50171 * 1 2 3 33 33 H 1.09003 * 109.47056 * 239.99176 * 2 1 3 34 34 H 1.08997 * 109.47491 * 180.44235 * 3 2 1 35 35 H 1.09007 * 109.46554 * 300.44244 * 3 2 1 36 36 H 1.08997 * 109.47160 * 60.43727 * 3 2 1 37 37 H 1.08996 * 109.47010 * 155.65988 * 5 4 2 38 38 H 1.08995 * 109.46874 * 35.66049 * 5 4 2 39 39 H 0.97000 * 119.99723 * 179.97438 * 9 8 6 40 40 H 1.08993 * 110.86918 * 343.98427 * 18 16 14 41 41 H 1.09006 * 110.86643 * 107.65926 * 18 16 14 42 42 H 1.07994 * 120.00402 * 359.97438 * 22 21 19 43 43 H 1.07993 * 119.99852 * 180.25247 * 23 22 21 44 44 H 1.08000 * 119.99823 * 179.76992 * 24 23 22 45 45 H 1.08010 * 119.99724 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.7528 -1.9515 1.0656 6 6 1.7754 -3.0940 0.9639 7 1 0.7133 -2.9003 0.9939 8 6 2.2370 -4.3866 0.8335 9 7 3.5304 -4.6224 0.7974 10 14 1.0255 -5.8029 0.7081 11 1 0.6902 -6.0427 -0.7186 12 1 1.6344 -7.0278 1.2861 13 1 -0.2113 -5.4642 1.4570 14 6 1.7918 -0.1661 2.4169 15 8 1.1146 0.8337 2.5311 16 6 2.3798 -0.8216 3.6398 17 1 2.1167 -1.8791 3.6660 18 6 1.8854 -0.1125 4.9202 19 6 3.1922 0.0426 5.7312 20 1 3.3311 -0.8101 6.3959 21 6 3.1725 1.3261 6.5205 22 6 3.4765 2.5235 5.9005 23 6 3.4537 3.7016 6.6234 24 6 3.1367 3.6809 7.9688 25 6 2.8383 2.4827 8.5901 26 6 2.8559 1.3053 7.8660 27 8 4.2442 0.0815 4.7219 28 6 3.8835 -0.6524 3.6564 29 8 4.6430 -1.1088 2.8350 30 1 -0.3633 0.5218 0.8854 31 1 -0.3633 0.5060 -0.8945 32 1 -0.3634 -1.0276 0.0090 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 -0.0079 35 1 1.6703 1.9585 -0.8861 36 1 1.6833 1.9540 0.8938 37 1 3.3885 -2.0938 1.9395 38 1 3.3705 -1.9208 0.1681 39 1 3.8551 -5.5319 0.7060 40 1 1.4572 0.8615 4.6840 41 1 1.1676 -0.7340 5.4557 42 1 3.7285 2.5392 4.8504 43 1 3.6872 4.6376 6.1380 44 1 3.1225 4.6008 8.5345 45 1 2.5910 2.4664 9.6414 46 1 2.6232 0.3692 8.3515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813431797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:48 Heat of formation + Delta-G solvation = -84.234965 kcal Electronic energy + Delta-G solvation = -29480.761661 eV Core-core repulsion = 25528.818526 eV Total energy + Delta-G solvation = -3951.943136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30012 -39.40867 -38.83860 -37.26371 -35.47480 -33.49512 -32.83035 -31.97388 -31.03429 -30.89684 -27.43625 -26.86122 -26.56547 -23.62741 -22.87535 -22.78817 -22.11667 -21.19678 -20.74715 -18.33911 -17.34150 -17.14838 -16.57635 -16.44449 -16.23182 -15.58524 -15.33696 -15.09896 -14.61116 -14.41170 -14.14992 -13.83052 -13.66822 -13.53087 -13.24503 -13.06696 -12.93055 -12.71000 -12.27839 -12.19436 -12.12109 -11.76037 -11.53579 -11.44352 -11.37458 -11.23768 -11.07000 -10.94687 -10.90038 -10.71910 -10.50078 -10.40344 -10.09275 -9.87364 -9.42879 -9.05836 -8.99791 -8.88774 -8.47667 -7.70418 -6.11508 -4.20183 1.10964 1.26908 2.27813 3.03708 3.23032 3.26319 3.30752 3.33662 3.67453 3.79559 4.25173 4.32699 4.35834 4.55384 4.69626 4.82592 4.92216 4.99093 5.04369 5.18242 5.21778 5.35621 5.42454 5.52403 5.63769 5.69728 5.76856 5.86099 5.86213 5.90862 6.09132 6.12136 6.20277 6.27701 6.35995 6.37174 6.40572 6.44861 6.72692 6.81762 6.82098 6.86293 6.93860 7.40314 7.58533 7.79102 7.81358 8.13322 8.32421 8.76125 8.93528 9.46095 10.94322 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003762 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.348220 B = 7440.077672 C = 8353.790198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.170 4.170 4 N -0.576 5.576 5 C 0.213 3.787 6 C -0.542 4.542 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.884 5.884 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.534 3.466 15 O -0.559 6.559 16 C -0.176 4.176 17 H 0.150 0.850 18 C -0.134 4.134 19 C 0.124 3.876 20 H 0.105 0.895 21 C -0.086 4.086 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.105 4.105 27 O -0.339 6.339 28 C 0.490 3.510 29 O -0.412 6.412 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 12.509 12.412 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.228 4.228 4 N -0.305 5.305 5 C 0.094 3.906 6 C -0.581 4.581 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.522 5.522 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.320 3.680 15 O -0.440 6.440 16 C -0.199 4.199 17 H 0.167 0.833 18 C -0.171 4.171 19 C 0.069 3.931 20 H 0.123 0.877 21 C -0.086 4.086 22 C -0.106 4.106 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.123 4.123 27 O -0.256 6.256 28 C 0.328 3.672 29 O -0.291 6.291 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.745 12.731 12.025 17.599 hybrid contribution -0.673 -1.247 -0.266 1.442 sum -2.418 11.484 11.759 16.613 Atomic orbital electron populations 1.22137 0.95604 1.02321 1.01881 1.20867 0.94244 0.92321 0.88127 1.22235 1.00693 0.96901 1.02961 1.48325 1.53627 1.24542 1.04008 1.20095 0.91852 0.77793 1.00894 1.21533 0.93409 0.91255 1.51919 0.92176 1.24951 0.95159 0.98731 0.95023 1.69972 1.12273 1.21014 1.48964 0.86576 0.81166 0.81750 0.78422 1.20555 1.21090 1.19851 1.19327 0.80934 0.83791 0.83975 1.90535 1.41048 1.26551 1.85904 1.22704 0.94839 1.05810 0.96552 0.83252 1.23071 0.96501 1.04495 0.93067 1.22453 0.85655 0.96542 0.88451 0.87749 1.19510 1.01612 0.93661 0.93823 1.21058 0.97354 0.91677 1.00538 1.21179 1.00121 0.98156 0.94413 1.21196 0.99347 0.98033 0.94966 1.21072 1.00711 0.92452 0.99854 1.20903 0.99864 0.98811 0.92718 1.87121 1.44883 1.65233 1.28411 1.22591 0.89777 0.74691 0.80138 1.90798 1.59720 1.41337 1.37291 0.91316 0.92978 0.92196 0.89701 0.93238 0.92543 0.90288 0.90746 0.94933 0.92594 0.86926 0.88144 0.85512 0.85865 0.86091 0.85856 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.20 37.16 0.34 -2.51 16 2 C 0.15 2.82 3.27 -67.93 -0.22 2.59 16 3 C -0.17 -2.88 9.04 37.16 0.34 -2.54 16 4 N -0.58 -12.29 2.41 -167.47 -0.40 -12.70 16 5 C 0.21 5.26 4.44 -5.19 -0.02 5.23 16 6 C -0.54 -14.23 9.38 -34.44 -0.32 -14.56 16 7 H 0.06 1.58 7.72 -52.49 -0.40 1.17 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.88 -25.08 13.29 55.43 0.74 -24.35 16 10 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.53 10.66 6.43 -10.99 -0.07 10.59 16 15 O -0.56 -11.26 11.59 5.55 0.06 -11.20 16 16 C -0.18 -3.09 2.44 -91.84 -0.22 -3.31 16 17 H 0.15 2.70 7.71 -51.93 -0.40 2.30 16 18 C -0.13 -1.80 6.18 -25.12 -0.16 -1.95 16 19 C 0.12 1.56 3.74 -27.06 -0.10 1.46 16 20 H 0.10 1.06 8.07 -51.92 -0.42 0.64 16 21 C -0.09 -1.01 4.97 -104.63 -0.52 -1.52 16 22 C -0.09 -1.08 9.37 -39.58 -0.37 -1.45 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.10 -1.01 9.69 -39.58 -0.38 -1.39 16 27 O -0.34 -5.54 9.97 -39.13 -0.39 -5.93 16 28 C 0.49 9.28 7.67 36.31 0.28 9.56 16 29 O -0.41 -9.34 14.87 -18.39 -0.27 -9.61 16 30 H 0.07 1.27 6.46 -51.93 -0.34 0.94 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 33 H 0.08 1.64 7.84 -51.93 -0.41 1.23 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.08 1.43 5.90 -51.93 -0.31 1.13 16 37 H 0.08 1.91 3.54 -51.93 -0.18 1.73 16 38 H 0.03 0.88 8.00 -51.93 -0.42 0.46 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.11 1.66 6.45 -51.93 -0.33 1.32 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.13 1.68 7.66 -52.49 -0.40 1.28 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -30.99 374.88 -8.91 -39.90 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.54 Total: 5.38 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.73 Total: -2.73 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.33 Total: -37.04 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.60 Total: -26.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.99 -8.91 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.336 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds