Wall clock time and date at job start Tue Mar 31 2020 16:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47789 * 2 1 4 4 N 1.46501 * 109.46868 * 119.99906 * 2 1 3 5 5 C 1.46512 * 120.00104 * 114.20188 * 4 2 1 6 6 C 1.50703 * 109.46870 * 275.66248 * 5 4 2 7 7 H 1.08000 * 119.99598 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99643 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99960 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47068 * 89.99730 * 10 8 6 12 12 H 1.48498 * 109.47401 * 209.99775 * 10 8 6 13 13 H 1.48502 * 109.47148 * 330.00158 * 10 8 6 14 14 C 1.34777 * 120.00380 * 294.19934 * 4 2 1 15 15 O 1.21290 * 119.99421 * 4.48473 * 14 4 2 16 16 C 1.50694 * 120.00664 * 184.48142 * 14 4 2 17 17 H 1.09005 * 110.32769 * 307.02394 * 16 14 4 18 18 C 1.54491 * 110.36965 * 184.77825 * 16 14 4 19 19 C 1.54573 * 102.14567 * 225.82068 * 18 16 14 20 20 H 1.09007 * 110.43748 * 267.98806 * 19 18 16 21 21 C 1.50695 * 110.44111 * 145.59090 * 19 18 16 22 22 C 1.38227 * 120.00015 * 279.72772 * 21 19 18 23 23 C 1.38245 * 120.00044 * 179.76525 * 22 21 19 24 24 C 1.38237 * 119.99664 * 0.48385 * 23 22 21 25 25 C 1.38232 * 119.99874 * 359.79027 * 24 23 22 26 26 C 1.38228 * 120.00504 * 359.95716 * 25 24 23 27 27 O 1.45835 * 104.44499 * 26.85124 * 19 18 16 28 28 C 1.34318 * 109.91801 * 329.32334 * 27 19 18 29 29 O 1.20828 * 125.22796 * 200.92179 * 28 27 19 30 30 H 1.09001 * 109.46911 * 300.51164 * 1 2 3 31 31 H 1.09002 * 109.46767 * 60.50596 * 1 2 3 32 32 H 1.08998 * 109.47382 * 180.50171 * 1 2 3 33 33 H 1.09003 * 109.47056 * 239.99176 * 2 1 3 34 34 H 1.08997 * 109.47491 * 180.44235 * 3 2 1 35 35 H 1.09007 * 109.46554 * 300.44244 * 3 2 1 36 36 H 1.08997 * 109.47160 * 60.43727 * 3 2 1 37 37 H 1.08996 * 109.47010 * 155.65988 * 5 4 2 38 38 H 1.08995 * 109.46874 * 35.66049 * 5 4 2 39 39 H 0.97000 * 119.99723 * 179.97438 * 9 8 6 40 40 H 1.08993 * 110.86918 * 343.98427 * 18 16 14 41 41 H 1.09006 * 110.86643 * 107.65926 * 18 16 14 42 42 H 1.07994 * 120.00402 * 359.97438 * 22 21 19 43 43 H 1.07993 * 119.99852 * 180.25247 * 23 22 21 44 44 H 1.08000 * 119.99823 * 179.76992 * 24 23 22 45 45 H 1.08010 * 119.99724 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.7528 -1.9515 1.0656 6 6 1.7754 -3.0940 0.9639 7 1 0.7133 -2.9003 0.9939 8 6 2.2370 -4.3866 0.8335 9 7 3.5304 -4.6224 0.7974 10 14 1.0255 -5.8029 0.7081 11 1 0.6902 -6.0427 -0.7186 12 1 1.6344 -7.0278 1.2861 13 1 -0.2113 -5.4642 1.4570 14 6 1.7918 -0.1661 2.4169 15 8 1.1146 0.8337 2.5311 16 6 2.3798 -0.8216 3.6398 17 1 2.1167 -1.8791 3.6660 18 6 1.8854 -0.1125 4.9202 19 6 3.1922 0.0426 5.7312 20 1 3.3311 -0.8101 6.3959 21 6 3.1725 1.3261 6.5205 22 6 3.4765 2.5235 5.9005 23 6 3.4537 3.7016 6.6234 24 6 3.1367 3.6809 7.9688 25 6 2.8383 2.4827 8.5901 26 6 2.8559 1.3053 7.8660 27 8 4.2442 0.0815 4.7219 28 6 3.8835 -0.6524 3.6564 29 8 4.6430 -1.1088 2.8350 30 1 -0.3633 0.5218 0.8854 31 1 -0.3633 0.5060 -0.8945 32 1 -0.3634 -1.0276 0.0090 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 -0.0079 35 1 1.6703 1.9585 -0.8861 36 1 1.6833 1.9540 0.8938 37 1 3.3885 -2.0938 1.9395 38 1 3.3705 -1.9208 0.1681 39 1 3.8551 -5.5319 0.7060 40 1 1.4572 0.8615 4.6840 41 1 1.1676 -0.7340 5.4557 42 1 3.7285 2.5392 4.8504 43 1 3.6872 4.6376 6.1380 44 1 3.1225 4.6008 8.5345 45 1 2.5910 2.4664 9.6414 46 1 2.6232 0.3692 8.3515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813431797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:47 Heat of formation + Delta-G solvation = -99.892167 kcal Electronic energy + Delta-G solvation = -29481.440609 eV Core-core repulsion = 25528.818526 eV Total energy + Delta-G solvation = -3952.622083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67580 -40.72011 -39.99866 -38.68715 -37.11388 -35.18638 -34.32653 -33.33995 -32.23338 -31.77705 -29.08236 -28.25115 -28.03764 -25.06174 -24.55572 -23.77303 -23.30221 -22.34315 -22.05904 -19.78971 -18.81532 -18.40086 -18.30230 -17.94092 -17.58294 -17.06419 -16.60375 -16.32751 -16.13646 -15.77925 -15.42791 -15.27532 -14.86739 -14.59034 -14.50475 -14.36656 -14.21014 -13.95015 -13.93991 -13.62164 -13.34177 -13.23277 -13.17252 -12.84602 -12.74269 -12.65663 -12.59169 -12.29788 -12.17931 -12.11873 -11.94420 -11.83009 -11.67623 -11.56956 -11.18160 -10.59148 -10.51995 -9.81111 -9.70157 -9.45886 -8.16766 -6.33905 0.31699 0.51233 0.77620 1.41026 1.41433 1.49007 1.53740 1.99375 2.24708 2.42130 2.78011 2.98260 3.11566 3.14980 3.39633 3.69701 3.85059 3.90436 4.04512 4.16428 4.18328 4.22232 4.29147 4.33671 4.36095 4.63226 4.67539 4.68831 4.75986 4.76415 4.89709 4.97524 4.98254 5.03350 5.07595 5.16347 5.23950 5.29110 5.41392 5.48779 5.55660 5.63225 5.70070 5.73809 5.87070 6.05827 6.09586 6.28740 6.54280 6.83074 7.17952 7.38250 8.88535 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003762 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.348220 B = 7440.077672 C = 8353.790198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 C -0.158 4.158 4 N -0.586 5.586 5 C 0.229 3.771 6 C -0.547 4.547 7 H 0.059 0.941 8 C 0.016 3.984 9 N -0.921 5.921 10 Si 0.961 3.039 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.529 3.471 15 O -0.560 6.560 16 C -0.176 4.176 17 H 0.144 0.856 18 C -0.120 4.120 19 C 0.123 3.877 20 H 0.136 0.864 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.131 4.131 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.103 4.103 27 O -0.345 6.345 28 C 0.494 3.506 29 O -0.461 6.461 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.002 1.002 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.155 0.845 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 13.025 14.778 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 C -0.216 4.216 4 N -0.315 5.315 5 C 0.109 3.891 6 C -0.586 4.586 7 H 0.077 0.923 8 C -0.184 4.184 9 N -0.560 5.560 10 Si 0.786 3.214 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.188 1.188 14 C 0.316 3.684 15 O -0.441 6.441 16 C -0.198 4.198 17 H 0.161 0.839 18 C -0.158 4.158 19 C 0.069 3.931 20 H 0.154 0.846 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.121 4.121 27 O -0.262 6.262 28 C 0.334 3.666 29 O -0.345 6.345 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.172 0.828 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.721 13.291 14.421 19.962 hybrid contribution -0.055 -1.261 -0.934 1.571 sum -3.777 12.030 13.487 18.463 Atomic orbital electron populations 1.22021 0.94163 1.01521 1.02983 1.21121 0.95417 0.93164 0.87120 1.22124 0.99983 0.95557 1.03886 1.48322 1.53849 1.23916 1.05431 1.19672 0.91475 0.79158 0.98839 1.21734 0.93408 0.91936 1.51496 0.92307 1.25764 0.96736 1.01334 0.94542 1.70105 1.14230 1.21643 1.50032 0.85515 0.79071 0.78390 0.78453 1.20245 1.20661 1.18831 1.19665 0.80764 0.83766 0.84213 1.90527 1.41087 1.26463 1.86045 1.22732 0.93895 1.05758 0.97456 0.83855 1.23102 0.97563 1.03860 0.91254 1.22855 0.83872 0.98665 0.87735 0.84601 1.19527 1.03280 0.92637 0.94874 1.21039 0.99347 0.93183 0.99809 1.21377 1.00298 0.97905 0.95345 1.21567 0.97951 0.99533 0.94356 1.21500 0.99291 0.91841 1.01282 1.21225 0.98768 1.00526 0.91604 1.87105 1.46612 1.64110 1.28403 1.22791 0.90034 0.73798 0.79956 1.90761 1.60863 1.43652 1.39202 0.92180 0.89836 0.93805 0.90565 0.94255 0.89351 0.91428 0.91602 0.98351 0.92501 0.88128 0.84726 0.88037 0.84831 0.83440 0.82784 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.20 71.98 0.66 -4.50 16 2 C 0.13 5.21 3.27 44.99 0.15 5.36 16 3 C -0.16 -5.34 9.04 71.98 0.65 -4.69 16 4 N -0.59 -25.89 2.41 -802.13 -1.93 -27.82 16 5 C 0.23 11.87 4.44 85.63 0.38 12.25 16 6 C -0.55 -29.36 9.38 25.60 0.24 -29.12 16 7 H 0.06 3.11 7.72 -2.91 -0.02 3.09 16 8 C 0.02 0.89 5.46 84.65 0.46 1.35 16 9 N -0.92 -53.59 13.29 21.44 0.28 -53.31 16 10 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 C 0.53 21.61 6.43 87.66 0.56 22.18 16 15 O -0.56 -22.72 11.59 -3.06 -0.04 -22.76 16 16 C -0.18 -6.27 2.44 -11.58 -0.03 -6.29 16 17 H 0.14 5.29 7.71 -2.38 -0.02 5.27 16 18 C -0.12 -3.11 6.18 31.64 0.20 -2.91 16 19 C 0.12 2.94 3.74 30.38 0.11 3.06 16 20 H 0.14 2.40 8.07 -2.38 -0.02 2.38 16 21 C -0.10 -2.27 4.97 -19.87 -0.10 -2.37 16 22 C -0.12 -2.84 9.37 22.27 0.21 -2.63 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 25 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 26 C -0.10 -1.66 9.69 22.27 0.22 -1.44 16 27 O -0.35 -11.57 9.97 -52.61 -0.52 -12.09 16 28 C 0.49 19.52 7.67 71.44 0.55 20.07 16 29 O -0.46 -22.28 14.87 21.61 0.32 -21.96 16 30 H 0.06 2.18 6.46 -2.39 -0.02 2.16 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 33 H 0.08 3.04 7.84 -2.39 -0.02 3.02 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.07 2.45 5.90 -2.39 -0.01 2.44 16 37 H 0.07 3.58 3.54 -2.39 -0.01 3.57 16 38 H 0.00 -0.09 8.00 -2.39 -0.02 -0.11 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 40 H 0.10 2.90 6.45 -2.39 -0.02 2.88 16 41 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 42 H 0.10 2.90 7.66 -2.91 -0.02 2.88 16 43 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -69.97 374.88 6.06 -63.91 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.99 Total: 24.66 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 4.93 Total: 4.97 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.65 Total: -81.12 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -0.24 Total: -56.80 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.97 6.06 -63.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.981 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds