Wall clock time and date at job start Tue Mar 31 2020 16:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47104 * 2 1 4 4 O 1.20761 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.87728 * 44.29847 * 5 3 2 7 7 C 1.54329 * 110.01202 * 283.20126 * 5 3 2 8 8 C 1.55155 * 102.94361 * 218.31663 * 7 5 3 9 9 C 1.54912 * 101.57982 * 35.50431 * 8 7 5 10 10 N 1.47022 * 109.88515 * 165.31709 * 5 3 2 11 11 C 1.34781 * 125.64435 * 298.54993 * 10 5 3 12 12 O 1.21274 * 120.00430 * 359.97438 * 11 10 5 13 13 C 1.50703 * 119.99559 * 179.97438 * 11 10 5 14 14 C 1.50699 * 109.46839 * 179.97438 * 13 11 10 15 15 C 1.38306 * 119.93132 * 269.72621 * 14 13 11 16 16 C 1.38104 * 120.06680 * 179.72572 * 15 14 13 17 17 C 1.38871 * 119.92907 * 0.56837 * 16 15 14 18 18 O 1.35751 * 120.06809 * 179.67919 * 17 16 15 19 19 C 1.34833 * 117.00385 * 174.48678 * 18 17 16 20 20 H 1.07998 * 119.99546 * 5.06006 * 19 18 17 21 21 C 1.38653 * 120.00322 * 185.05786 * 19 18 17 22 22 N 1.31554 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46951 * 60.00001 * 23 21 19 25 25 H 1.48499 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46856 * 300.00506 * 23 21 19 27 27 C 1.38878 * 119.86810 * 359.70539 * 17 16 15 28 28 C 1.38102 * 119.92992 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.47285 * 59.99702 * 1 2 3 30 30 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 300.00366 * 1 2 3 32 32 H 1.09005 * 109.46816 * 240.00318 * 2 1 3 33 33 H 1.09000 * 109.46970 * 120.00460 * 2 1 3 34 34 H 1.08996 * 110.71815 * 336.68072 * 7 5 3 35 35 H 1.09004 * 110.71564 * 99.95157 * 7 5 3 36 36 H 1.08996 * 111.00526 * 277.42775 * 8 7 5 37 37 H 1.09001 * 111.00271 * 153.57529 * 8 7 5 38 38 H 1.09003 * 110.36662 * 204.15264 * 9 8 7 39 39 H 1.08998 * 110.46328 * 81.87331 * 9 8 7 40 40 H 1.08996 * 109.47276 * 299.99813 * 13 11 10 41 41 H 1.08999 * 109.47060 * 60.00192 * 13 11 10 42 42 H 1.07993 * 119.96345 * 359.97438 * 15 14 13 43 43 H 1.08000 * 120.03143 * 180.27144 * 16 15 14 44 44 H 0.97001 * 119.99989 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.04209 * 179.97438 * 27 17 16 46 46 H 1.07992 * 119.96879 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 1 4.0126 1.0425 -0.7150 7 6 4.0931 1.4673 1.4126 8 6 5.1359 2.6079 1.5497 9 6 4.4398 3.7594 0.7820 10 7 3.7614 3.1024 -0.3500 11 6 3.4231 3.6931 -1.5132 12 8 2.8648 3.0528 -2.3787 13 6 3.7387 5.1494 -1.7384 14 6 3.2609 5.5611 -3.1071 15 6 4.1079 5.4529 -4.1951 16 6 3.6711 5.8240 -5.4516 17 6 2.3839 6.3174 -5.6199 18 8 1.9538 6.6891 -6.8527 19 6 0.6599 7.0509 -6.9663 20 1 0.0379 7.1150 -6.0858 21 6 0.1280 7.3406 -8.2135 22 7 0.8857 7.2621 -9.2861 23 14 -1.6645 7.8425 -8.3708 24 1 -1.9034 9.0784 -7.5830 25 1 -1.9841 8.0956 -9.7988 26 1 -2.5308 6.7519 -7.8557 27 6 1.5377 6.4301 -4.5245 28 6 1.9781 6.0511 -3.2717 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3144 1.5638 2.1691 35 1 4.5768 0.4926 1.4777 36 1 6.0781 2.3351 1.0745 37 1 5.2900 2.8728 2.5957 38 1 5.1785 4.4739 0.4185 39 1 3.7126 4.2591 1.4219 40 1 3.2361 5.7514 -0.9814 41 1 4.8156 5.3028 -1.6685 42 1 5.1105 5.0741 -4.0626 43 1 4.3315 5.7352 -6.3015 44 1 0.5135 7.4644 -10.1587 45 1 0.5362 6.8138 -4.6522 46 1 1.3207 6.1389 -2.4194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826722578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:57 Heat of formation + Delta-G solvation = -73.364105 kcal Electronic energy + Delta-G solvation = -27977.162452 eV Core-core repulsion = 24025.690712 eV Total energy + Delta-G solvation = -3951.471740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83219 -39.19692 -38.56504 -37.36865 -36.29039 -33.16750 -32.48027 -32.03828 -31.01546 -30.08674 -29.99513 -26.63752 -25.40225 -25.07396 -23.37809 -21.91201 -21.87547 -20.91667 -19.90618 -18.83385 -17.90035 -17.22858 -17.12634 -16.82743 -15.86405 -15.52885 -15.28986 -14.90025 -14.61826 -14.38590 -14.19812 -14.04829 -13.74995 -13.48924 -13.43889 -13.27269 -13.07899 -12.77054 -12.60858 -12.43455 -12.40316 -12.08498 -11.88705 -11.75984 -11.72262 -11.44886 -11.38172 -11.32922 -11.18245 -10.76317 -10.66713 -10.56157 -10.37307 -9.91896 -9.64722 -9.24665 -8.74578 -8.68755 -8.05914 -7.08021 -6.37599 -3.95981 1.84202 2.30701 2.34530 2.77283 2.92611 3.18269 3.20565 3.22457 3.75976 4.03413 4.04044 4.15249 4.47214 4.61376 4.71888 4.80271 4.84144 4.94095 4.97992 5.08964 5.16169 5.19213 5.26147 5.31128 5.34369 5.37403 5.40819 5.44451 5.52585 5.59143 5.68851 5.71510 5.73554 5.83895 5.92977 6.00615 6.12111 6.30342 6.50771 6.78920 7.00330 7.13590 7.31689 7.36045 7.46761 7.48874 7.53642 7.92679 8.08034 8.33540 9.08233 9.79224 10.80645 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.002639 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.458737 B =10605.596370 C =11741.924849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.346 3.654 4 O -0.431 6.431 5 C 0.088 3.912 6 H 0.100 0.900 7 C -0.118 4.118 8 C -0.131 4.131 9 C 0.099 3.901 10 N -0.617 5.617 11 C 0.531 3.469 12 O -0.514 6.514 13 C -0.072 4.072 14 C -0.170 4.170 15 C -0.060 4.060 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.054 4.054 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 -12.400 25.186 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.209 4.209 3 C 0.218 3.782 4 O -0.302 6.302 5 C -0.018 4.018 6 H 0.118 0.882 7 C -0.156 4.156 8 C -0.169 4.169 9 C -0.024 4.024 10 N -0.354 5.354 11 C 0.321 3.679 12 O -0.388 6.388 13 C -0.112 4.112 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.251 4.251 28 C -0.072 4.072 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.810 -12.119 24.107 28.090 hybrid contribution -0.900 0.086 -0.009 0.904 sum 6.910 -12.033 24.098 27.807 Atomic orbital electron populations 1.21583 0.93652 1.01721 1.03215 1.22024 0.98551 0.95890 1.04398 1.24920 0.90876 0.91263 0.71156 1.90408 1.58370 1.47714 1.33674 1.22037 0.95272 0.85938 0.98512 0.88220 1.22552 0.98838 1.00412 0.93780 1.22789 0.98310 0.94546 1.01254 1.22342 0.96122 0.95900 0.88050 1.48508 1.61011 1.09742 1.16126 1.20772 0.77699 0.89912 0.79519 1.90738 1.40128 1.65405 1.42486 1.20364 1.02219 0.91255 0.97320 1.18641 0.95808 1.09712 0.92967 1.20383 0.97957 0.97793 0.91657 1.20137 0.95353 1.08344 0.97281 1.19370 0.92872 0.91367 0.86049 1.83973 1.28326 1.72117 1.23802 1.21285 0.83968 1.46720 0.94718 0.89166 1.25271 1.00082 0.97010 0.94141 1.70032 1.36114 1.45351 0.98506 0.85794 0.80681 0.79251 0.77791 1.19520 1.20299 1.19508 1.21104 1.01504 1.09991 0.92514 1.20524 0.94153 0.96336 0.96235 0.91875 0.92078 0.92329 0.88370 0.88654 0.90313 0.89030 0.90052 0.89408 0.89979 0.91259 0.89077 0.89110 0.87441 0.86553 0.92053 0.85609 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 37.16 0.34 -1.03 16 2 C -0.17 -1.41 6.36 -27.88 -0.18 -1.59 16 3 C 0.35 4.05 5.68 -29.04 -0.16 3.88 16 4 O -0.43 -6.94 15.51 6.00 0.09 -6.85 16 5 C 0.09 0.84 3.19 -68.10 -0.22 0.62 16 6 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -0.61 6.47 -24.89 -0.16 -0.77 16 8 C -0.13 -0.60 7.09 -24.58 -0.17 -0.77 16 9 C 0.10 0.73 6.69 -2.53 -0.02 0.71 16 10 N -0.62 -7.17 2.77 -164.32 -0.45 -7.62 16 11 C 0.53 8.39 7.16 -10.98 -0.08 8.31 16 12 O -0.51 -10.59 15.73 5.56 0.09 -10.51 16 13 C -0.07 -1.02 4.83 -29.03 -0.14 -1.16 16 14 C -0.17 -3.21 4.38 -104.57 -0.46 -3.67 16 15 C -0.06 -1.16 9.69 -39.61 -0.38 -1.55 16 16 C -0.19 -4.38 9.99 -39.40 -0.39 -4.77 16 17 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 18 O -0.18 -5.36 9.76 0.04 0.00 -5.36 16 19 C -0.39 -11.46 9.49 30.89 0.29 -11.17 16 20 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -26.24 13.67 55.48 0.76 -25.48 16 23 Si 0.94 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.23 -5.52 9.17 -39.39 -0.36 -5.88 16 28 C -0.05 -1.12 9.69 -39.61 -0.38 -1.51 16 29 H 0.06 0.75 8.10 -51.92 -0.42 0.33 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.50 7.48 -51.93 -0.39 0.11 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.09 1.02 7.79 -51.93 -0.40 0.61 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 46 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -38.18 385.39 -8.38 -46.56 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.82 Total: 2.58 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.83 Total: -15.51 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.30 Total: -33.11 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.18 Total: -22.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.18 -8.38 -46.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826722578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -38.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds