Wall clock time and date at job start Tue Mar 31 2020 16:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47104 * 2 1 4 4 O 1.20761 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.87728 * 44.29847 * 5 3 2 7 7 C 1.54329 * 110.01202 * 283.20126 * 5 3 2 8 8 C 1.55155 * 102.94361 * 218.31663 * 7 5 3 9 9 C 1.54912 * 101.57982 * 35.50431 * 8 7 5 10 10 N 1.47022 * 109.88515 * 165.31709 * 5 3 2 11 11 C 1.34781 * 125.64435 * 298.54993 * 10 5 3 12 12 O 1.21274 * 120.00430 * 359.97438 * 11 10 5 13 13 C 1.50703 * 119.99559 * 179.97438 * 11 10 5 14 14 C 1.50699 * 109.46839 * 179.97438 * 13 11 10 15 15 C 1.38306 * 119.93132 * 269.72621 * 14 13 11 16 16 C 1.38104 * 120.06680 * 179.72572 * 15 14 13 17 17 C 1.38871 * 119.92907 * 0.56837 * 16 15 14 18 18 O 1.35751 * 120.06809 * 179.67919 * 17 16 15 19 19 C 1.34833 * 117.00385 * 174.48678 * 18 17 16 20 20 H 1.07998 * 119.99546 * 5.06006 * 19 18 17 21 21 C 1.38653 * 120.00322 * 185.05786 * 19 18 17 22 22 N 1.31554 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46951 * 60.00001 * 23 21 19 25 25 H 1.48499 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46856 * 300.00506 * 23 21 19 27 27 C 1.38878 * 119.86810 * 359.70539 * 17 16 15 28 28 C 1.38102 * 119.92992 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.47285 * 59.99702 * 1 2 3 30 30 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 300.00366 * 1 2 3 32 32 H 1.09005 * 109.46816 * 240.00318 * 2 1 3 33 33 H 1.09000 * 109.46970 * 120.00460 * 2 1 3 34 34 H 1.08996 * 110.71815 * 336.68072 * 7 5 3 35 35 H 1.09004 * 110.71564 * 99.95157 * 7 5 3 36 36 H 1.08996 * 111.00526 * 277.42775 * 8 7 5 37 37 H 1.09001 * 111.00271 * 153.57529 * 8 7 5 38 38 H 1.09003 * 110.36662 * 204.15264 * 9 8 7 39 39 H 1.08998 * 110.46328 * 81.87331 * 9 8 7 40 40 H 1.08996 * 109.47276 * 299.99813 * 13 11 10 41 41 H 1.08999 * 109.47060 * 60.00192 * 13 11 10 42 42 H 1.07993 * 119.96345 * 359.97438 * 15 14 13 43 43 H 1.08000 * 120.03143 * 180.27144 * 16 15 14 44 44 H 0.97001 * 119.99989 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.04209 * 179.97438 * 27 17 16 46 46 H 1.07992 * 119.96879 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 1 4.0126 1.0425 -0.7150 7 6 4.0931 1.4673 1.4126 8 6 5.1359 2.6079 1.5497 9 6 4.4398 3.7594 0.7820 10 7 3.7614 3.1024 -0.3500 11 6 3.4231 3.6931 -1.5132 12 8 2.8648 3.0528 -2.3787 13 6 3.7387 5.1494 -1.7384 14 6 3.2609 5.5611 -3.1071 15 6 4.1079 5.4529 -4.1951 16 6 3.6711 5.8240 -5.4516 17 6 2.3839 6.3174 -5.6199 18 8 1.9538 6.6891 -6.8527 19 6 0.6599 7.0509 -6.9663 20 1 0.0379 7.1150 -6.0858 21 6 0.1280 7.3406 -8.2135 22 7 0.8857 7.2621 -9.2861 23 14 -1.6645 7.8425 -8.3708 24 1 -1.9034 9.0784 -7.5830 25 1 -1.9841 8.0956 -9.7988 26 1 -2.5308 6.7519 -7.8557 27 6 1.5377 6.4301 -4.5245 28 6 1.9781 6.0511 -3.2717 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3144 1.5638 2.1691 35 1 4.5768 0.4926 1.4777 36 1 6.0781 2.3351 1.0745 37 1 5.2900 2.8728 2.5957 38 1 5.1785 4.4739 0.4185 39 1 3.7126 4.2591 1.4219 40 1 3.2361 5.7514 -0.9814 41 1 4.8156 5.3028 -1.6685 42 1 5.1105 5.0741 -4.0626 43 1 4.3315 5.7352 -6.3015 44 1 0.5135 7.4644 -10.1587 45 1 0.5362 6.8138 -4.6522 46 1 1.3207 6.1389 -2.4194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826722578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:57 Heat of formation + Delta-G solvation = -98.562537 kcal Electronic energy + Delta-G solvation = -27978.255138 eV Core-core repulsion = 24025.690712 eV Total energy + Delta-G solvation = -3952.564426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74455 -40.83477 -39.87875 -38.48379 -37.87217 -34.43888 -33.96089 -33.26422 -32.17317 -31.82139 -30.75589 -28.23861 -27.05005 -26.08534 -24.28542 -23.68106 -22.51821 -22.28409 -20.94718 -19.89901 -19.74211 -18.86167 -18.17659 -17.91355 -16.85327 -16.60961 -16.40504 -16.30002 -16.02997 -15.93865 -15.57559 -15.47587 -15.13592 -14.86635 -14.52048 -14.39177 -14.20627 -14.02623 -13.87667 -13.63404 -13.39295 -13.15451 -12.95847 -12.91548 -12.76273 -12.57335 -12.47909 -12.38539 -12.31576 -12.16748 -12.12584 -12.01073 -11.72063 -11.22850 -10.97143 -10.79073 -10.70454 -9.81221 -9.58824 -8.94494 -8.50054 -6.18455 0.56673 0.61911 0.99620 1.31002 1.42188 1.47773 1.65724 1.98707 2.15493 2.79274 3.01297 3.12579 3.47834 3.51629 3.66702 3.81549 3.95898 3.98849 4.06689 4.12153 4.16404 4.20801 4.26202 4.32338 4.40631 4.53269 4.56588 4.59946 4.75419 4.77512 4.80616 4.87189 4.91987 4.95823 4.99916 5.03476 5.10771 5.12658 5.22126 5.25017 5.32572 5.37995 5.52189 5.67304 5.73508 5.99636 6.17171 6.44954 6.61122 6.94141 7.22502 7.74383 8.73149 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.002639 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.458737 B =10605.596370 C =11741.924849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.339 3.661 4 O -0.488 6.488 5 C 0.076 3.924 6 H 0.104 0.896 7 C -0.108 4.108 8 C -0.121 4.121 9 C 0.085 3.915 10 N -0.614 5.614 11 C 0.525 3.475 12 O -0.579 6.579 13 C -0.071 4.071 14 C -0.146 4.146 15 C -0.054 4.054 16 C -0.203 4.203 17 C 0.114 3.886 18 O -0.230 6.230 19 C -0.418 4.418 20 H 0.097 0.903 21 C -0.021 4.021 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.255 1.255 25 H -0.266 1.266 26 H -0.262 1.262 27 C -0.244 4.244 28 C -0.063 4.063 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.274 0.726 45 H 0.116 0.884 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -13.842 29.513 34.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.215 3.785 4 O -0.363 6.363 5 C -0.029 4.029 6 H 0.122 0.878 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.036 4.036 10 N -0.348 5.348 11 C 0.316 3.684 12 O -0.458 6.458 13 C -0.110 4.110 14 C -0.147 4.147 15 C -0.072 4.072 16 C -0.222 4.222 17 C 0.064 3.936 18 O -0.137 6.137 19 C -0.494 4.494 20 H 0.114 0.886 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.837 3.163 24 H -0.179 1.179 25 H -0.191 1.191 26 H -0.186 1.186 27 C -0.263 4.263 28 C -0.081 4.081 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.168 0.832 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.661 -13.588 28.550 33.061 hybrid contribution -1.243 0.372 -1.004 1.640 sum 8.419 -13.216 27.546 31.691 Atomic orbital electron populations 1.21585 0.94962 1.02585 1.01123 1.22117 0.97420 0.94304 1.06745 1.25685 0.91788 0.92108 0.68884 1.90393 1.59800 1.49413 1.36660 1.22386 0.94093 0.84920 1.01478 0.87790 1.22644 0.99044 1.02434 0.90493 1.22822 0.97967 0.92686 1.02346 1.22735 0.96522 0.97379 0.86999 1.48535 1.59536 1.11009 1.15724 1.20861 0.77223 0.90157 0.80181 1.90724 1.43299 1.66782 1.44967 1.20469 1.05029 0.90938 0.94544 1.19227 0.94463 1.05572 0.95436 1.20863 0.99947 0.96184 0.90204 1.20454 0.94371 1.08266 0.99117 1.19903 0.94605 0.93381 0.85682 1.83933 1.28846 1.74942 1.25988 1.21766 0.84459 1.47528 0.95614 0.88590 1.26593 1.05417 0.96611 0.93270 1.70173 1.38704 1.47676 0.99228 0.84664 0.73809 0.79371 0.78442 1.17926 1.19066 1.18643 1.21190 1.01049 1.10611 0.93493 1.20859 0.95629 0.96062 0.95571 0.95511 0.89640 0.92915 0.87502 0.84355 0.90043 0.85890 0.89010 0.86910 0.88126 0.91184 0.86730 0.84852 0.83155 0.86472 0.91709 0.86666 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.20 71.98 0.66 -2.03 16 2 C -0.17 -2.46 6.36 29.85 0.19 -2.27 16 3 C 0.34 7.54 5.68 29.10 0.17 7.71 16 4 O -0.49 -15.89 15.51 -1.45 -0.02 -15.91 16 5 C 0.08 1.24 3.19 44.60 0.14 1.39 16 6 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 7 C -0.11 -0.62 6.47 31.78 0.21 -0.42 16 8 C -0.12 -0.47 7.09 31.99 0.23 -0.24 16 9 C 0.08 0.88 6.69 86.86 0.58 1.46 16 10 N -0.61 -12.50 2.77 -792.17 -2.19 -14.69 16 11 C 0.53 15.51 7.16 87.66 0.63 16.13 16 12 O -0.58 -23.73 15.73 -3.01 -0.05 -23.78 16 13 C -0.07 -1.76 4.83 29.10 0.14 -1.62 16 14 C -0.15 -5.25 4.38 -19.83 -0.09 -5.33 16 15 C -0.05 -2.03 9.69 22.25 0.22 -1.82 16 16 C -0.20 -9.52 9.99 22.39 0.22 -9.29 16 17 C 0.11 6.29 6.65 22.57 0.15 6.44 16 18 O -0.23 -14.87 9.76 -22.79 -0.22 -15.09 16 19 C -0.42 -26.09 9.49 67.92 0.64 -25.45 16 20 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -58.89 13.67 21.61 0.30 -58.60 16 23 Si 1.02 45.48 29.55 68.60 2.03 47.51 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.24 -12.16 9.17 22.39 0.21 -11.95 16 28 C -0.06 -2.61 9.69 22.25 0.22 -2.39 16 29 H 0.03 0.67 8.10 -2.38 -0.02 0.65 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.14 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.47 7.85 -2.39 -0.02 0.46 16 35 H 0.12 0.00 8.14 -2.38 -0.02 -0.01 16 36 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.10 0.68 7.48 -2.39 -0.02 0.67 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 2.39 8.08 -2.39 -0.02 2.37 16 41 H 0.13 2.23 7.79 -2.39 -0.02 2.21 16 42 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 44 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 45 H 0.12 5.83 5.64 -2.91 -0.02 5.81 16 46 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -93.87 385.39 5.80 -88.08 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.98 Total: 22.99 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.98 Total: -30.50 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.90 Total: -73.29 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.29 Total: -54.78 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -93.87 5.80 -88.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826722578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.484 kcal (2) G-P(sol) polarization free energy of solvation -93.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds