Wall clock time and date at job start Tue Mar 31 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47368 * 60.00217 * 5 4 2 7 7 C 1.53008 * 109.47219 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.46731 * 294.99907 * 7 5 4 9 9 O 1.21287 * 120.00303 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99875 * 179.97438 * 8 7 5 11 11 S 1.65596 * 120.00196 * 180.02562 * 10 8 7 12 12 O 1.42099 * 104.27796 * 181.07125 * 11 10 8 13 13 O 1.42098 * 104.27854 * 308.93034 * 11 10 8 14 14 C 1.81405 * 104.44733 * 65.00173 * 11 10 8 15 15 C 1.50702 * 109.47027 * 180.02562 * 14 11 10 16 16 H 1.08008 * 119.99726 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00224 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00384 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47083 * 90.00454 * 19 17 15 21 21 H 1.48499 * 109.46747 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47032 * 330.00169 * 19 17 15 23 23 C 1.53002 * 109.47343 * 300.00008 * 5 4 2 24 24 C 1.52997 * 109.47092 * 60.00063 * 23 5 4 25 25 C 1.53002 * 109.46978 * 59.99700 * 24 23 5 26 26 C 1.52993 * 109.47347 * 179.97438 * 24 23 5 27 27 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 4 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 4 2 1 33 33 H 1.09002 * 109.46861 * 54.99982 * 7 5 4 34 34 H 1.09000 * 109.47087 * 175.00544 * 7 5 4 35 35 H 0.97003 * 119.99686 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46899 * 299.99800 * 14 11 10 37 37 H 1.08990 * 109.47156 * 60.00318 * 14 11 10 38 38 H 0.96994 * 120.00808 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47067 * 179.97438 * 23 5 4 40 40 H 1.09000 * 109.47312 * 299.99943 * 23 5 4 41 41 H 1.09002 * 109.47097 * 60.00199 * 25 24 23 42 42 H 1.09004 * 109.47006 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47600 * 299.99959 * 25 24 23 44 44 H 1.09004 * 109.46672 * 60.00415 * 26 24 23 45 45 H 1.08996 * 109.47340 * 179.97438 * 26 24 23 46 46 H 1.08992 * 109.47718 * 300.00082 * 26 24 23 47 47 H 1.09000 * 109.47486 * 299.99829 * 27 2 1 48 48 H 1.09001 * 109.47362 * 60.00551 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2488 6 1 3.9338 0.3058 1.2486 7 6 4.0801 -1.4436 2.4978 8 6 3.6820 -0.6654 3.7254 9 8 3.0519 0.3647 3.6126 10 7 4.0252 -1.1148 4.9488 11 16 3.5873 -0.2602 6.2979 12 8 4.1318 -1.0064 7.3776 13 8 4.0235 1.0654 6.0299 14 6 1.7752 -0.3423 6.3172 15 6 1.2510 0.4093 7.5136 16 1 1.9392 0.8881 8.1945 17 6 -0.1071 0.4848 7.7396 18 7 -0.5645 1.1403 8.7839 19 14 -1.2973 -0.3440 6.5623 20 1 -1.5510 -1.7359 7.0132 21 1 -2.5765 0.4099 6.5395 22 1 -0.7105 -0.3648 5.1983 23 6 4.0795 -1.4434 -0.0004 24 6 3.5695 -0.7221 -1.2496 25 6 4.0800 0.7202 -1.2499 26 6 4.0795 -1.4433 -2.4988 27 6 2.0399 -0.7213 -1.2493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -0.2074 2.1392 32 1 1.6767 -1.7489 1.2492 33 1 3.6451 -2.4420 2.5435 34 1 5.1664 -1.5221 2.4539 35 1 4.5282 -1.9393 5.0391 36 1 1.3814 0.1067 5.4054 37 1 1.4593 -1.3839 6.3751 38 1 -1.5199 1.1937 8.9427 39 1 5.1696 -1.4433 -0.0009 40 1 3.7159 -2.4709 -0.0002 41 1 5.1700 0.7199 -1.2501 42 1 3.7163 1.2342 -2.1396 43 1 3.7170 1.2343 -0.3599 44 1 3.7161 -2.4710 -2.4988 45 1 3.7158 -0.9297 -3.3888 46 1 5.1694 -1.4433 -2.4990 47 1 1.6766 -1.7490 -1.2493 48 1 1.6767 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835413230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:50 Heat of formation + Delta-G solvation = -153.689620 kcal Electronic energy + Delta-G solvation = -28036.359116 eV Core-core repulsion = 24216.848152 eV Total energy + Delta-G solvation = -3819.510964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60259 -39.29389 -36.36666 -35.28536 -34.36383 -34.15590 -33.61024 -33.25919 -29.82425 -28.05515 -27.51745 -26.70784 -26.40196 -23.12703 -22.29827 -20.63540 -20.37004 -19.18796 -18.76267 -17.73567 -17.30018 -16.55921 -16.06279 -15.46277 -15.27645 -15.01111 -14.94154 -14.72108 -14.26882 -14.08920 -14.00959 -13.68765 -13.00432 -12.73297 -12.68712 -12.61376 -12.50889 -12.34358 -12.22694 -11.92827 -11.86774 -11.81060 -11.67244 -11.51621 -11.39993 -11.30564 -11.08493 -10.98092 -10.87590 -10.84282 -10.64171 -10.39552 -10.31256 -10.20540 -10.06726 -9.92205 -9.67148 -9.40246 -8.83831 -6.32286 -4.41607 0.87331 2.29637 3.08833 3.14874 3.23536 3.24983 4.21341 4.22875 4.36368 4.42240 4.46412 4.60722 4.75794 4.85501 4.90874 4.98817 5.11006 5.12843 5.16271 5.18221 5.28388 5.33682 5.41158 5.45548 5.46488 5.53416 5.57145 5.63045 5.67537 5.74067 5.75112 5.82960 5.89559 5.93079 6.04165 6.14059 6.15815 6.17094 6.21884 6.28696 6.31119 6.45772 6.49410 6.88028 7.16746 7.69778 7.98958 8.58047 9.22418 10.78694 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003817 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.662923 B = 7334.516472 C = 8730.197932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.078 4.078 6 H 0.086 0.914 7 C -0.140 4.140 8 C 0.529 3.471 9 O -0.484 6.484 10 N -1.064 6.064 11 S 2.578 3.422 12 O -0.962 6.962 13 O -0.944 6.944 14 C -0.458 4.458 15 C -0.533 4.533 16 H 0.087 0.913 17 C 0.091 3.909 18 N -0.879 5.879 19 Si 0.881 3.119 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.102 4.102 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.102 4.102 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.426 0.574 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.272 0.728 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -9.129 -22.841 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.097 4.097 6 H 0.105 0.895 7 C -0.182 4.182 8 C 0.315 3.685 9 O -0.356 6.356 10 N -0.825 5.825 11 S 2.678 3.322 12 O -0.953 6.953 13 O -0.935 6.935 14 C -0.594 4.594 15 C -0.572 4.572 16 H 0.105 0.895 17 C -0.116 4.116 18 N -0.515 5.515 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.185 1.185 23 C -0.140 4.140 24 C -0.064 4.064 25 C -0.205 4.205 26 C -0.198 4.198 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.573 -7.874 -22.262 24.798 hybrid contribution -0.937 -1.151 -0.625 1.610 sum 6.636 -9.025 -22.886 25.481 Atomic orbital electron populations 1.21829 0.95442 1.01574 1.01717 1.21138 0.95255 1.00092 0.94514 0.90759 1.21833 0.94197 1.00635 0.99098 1.21052 0.96452 1.00420 0.91804 0.89541 1.21909 1.03451 1.00476 0.92328 1.20691 0.77675 0.85236 0.84858 1.90878 1.36232 1.22377 1.86077 1.55559 1.64439 1.39392 1.23072 1.06283 0.80093 0.73868 0.71943 1.93540 1.78618 1.72356 1.50797 1.93549 1.80858 1.36143 1.82902 1.28097 1.17612 1.05983 1.07711 1.20028 0.94337 1.35741 1.07063 0.89548 1.24851 0.97809 0.93986 0.94966 1.69855 1.14740 1.39865 1.27011 0.86740 0.80627 0.79924 0.82051 1.19628 1.20496 1.18497 1.21646 1.00091 0.98970 0.93247 1.20502 0.95466 0.95695 0.94744 1.22006 1.00672 0.95605 1.02199 1.21858 1.00796 1.00050 0.97066 1.21657 0.94086 1.00509 0.97678 0.92354 0.93023 0.92978 0.89705 0.92464 0.88097 0.88129 0.74008 0.88475 0.90246 0.91793 0.91915 0.91848 0.92887 0.92968 0.91554 0.92831 0.92822 0.92768 0.92162 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.18 16 2 C -0.09 -0.94 2.45 -90.62 -0.22 -1.16 16 3 H 0.07 0.82 6.43 -51.93 -0.33 0.48 16 4 C -0.12 -1.36 4.22 -26.73 -0.11 -1.47 16 5 C -0.08 -0.78 1.56 -90.62 -0.14 -0.92 16 6 H 0.09 0.99 6.24 -51.93 -0.32 0.66 16 7 C -0.14 -1.30 5.17 -27.88 -0.14 -1.44 16 8 C 0.53 7.60 7.29 -10.98 -0.08 7.52 16 9 O -0.48 -8.93 12.07 -11.57 -0.14 -9.07 16 10 N -1.06 -15.26 5.60 31.22 0.17 -15.09 16 11 S 2.58 53.57 5.03 -107.50 -0.54 53.03 16 12 O -0.96 -21.47 18.08 -57.54 -1.04 -22.51 16 13 O -0.94 -22.98 17.04 -64.79 -1.10 -24.08 16 14 C -0.46 -10.58 4.71 36.01 0.17 -10.41 16 15 C -0.53 -15.14 9.68 -34.44 -0.33 -15.47 16 16 H 0.09 2.63 7.96 -52.48 -0.42 2.22 16 17 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 18 N -0.88 -26.37 13.96 55.43 0.77 -25.60 16 19 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 23 C -0.10 -0.78 4.01 -26.73 -0.11 -0.89 16 24 C -0.06 -0.50 0.77 -154.53 -0.12 -0.61 16 25 C -0.15 -1.22 7.78 37.16 0.29 -0.93 16 26 C -0.14 -0.93 8.47 37.15 0.31 -0.62 16 27 C -0.10 -0.86 4.01 -26.75 -0.11 -0.96 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.43 4.16 8.79 -34.47 -0.30 3.86 16 36 H 0.10 2.22 6.25 -51.92 -0.32 1.90 16 37 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.63 4.81 -51.93 -0.25 0.38 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -35.71 379.22 -9.34 -45.06 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.16 Total: 2.51 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -0.35 Total: -26.06 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.95 Total: -40.69 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.28 Total: -55.67 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.54 Total: 53.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.71 -9.34 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.634 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds