Wall clock time and date at job start Tue Mar 31 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47368 * 60.00217 * 5 4 2 7 7 C 1.53008 * 109.47219 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.46731 * 294.99907 * 7 5 4 9 9 O 1.21287 * 120.00303 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99875 * 179.97438 * 8 7 5 11 11 S 1.65596 * 120.00196 * 180.02562 * 10 8 7 12 12 O 1.42099 * 104.27796 * 181.07125 * 11 10 8 13 13 O 1.42098 * 104.27854 * 308.93034 * 11 10 8 14 14 C 1.81405 * 104.44733 * 65.00173 * 11 10 8 15 15 C 1.50702 * 109.47027 * 180.02562 * 14 11 10 16 16 H 1.08008 * 119.99726 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00224 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00384 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47083 * 90.00454 * 19 17 15 21 21 H 1.48499 * 109.46747 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47032 * 330.00169 * 19 17 15 23 23 C 1.53002 * 109.47343 * 300.00008 * 5 4 2 24 24 C 1.52997 * 109.47092 * 60.00063 * 23 5 4 25 25 C 1.53002 * 109.46978 * 59.99700 * 24 23 5 26 26 C 1.52993 * 109.47347 * 179.97438 * 24 23 5 27 27 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 4 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 4 2 1 33 33 H 1.09002 * 109.46861 * 54.99982 * 7 5 4 34 34 H 1.09000 * 109.47087 * 175.00544 * 7 5 4 35 35 H 0.97003 * 119.99686 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46899 * 299.99800 * 14 11 10 37 37 H 1.08990 * 109.47156 * 60.00318 * 14 11 10 38 38 H 0.96994 * 120.00808 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47067 * 179.97438 * 23 5 4 40 40 H 1.09000 * 109.47312 * 299.99943 * 23 5 4 41 41 H 1.09002 * 109.47097 * 60.00199 * 25 24 23 42 42 H 1.09004 * 109.47006 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47600 * 299.99959 * 25 24 23 44 44 H 1.09004 * 109.46672 * 60.00415 * 26 24 23 45 45 H 1.08996 * 109.47340 * 179.97438 * 26 24 23 46 46 H 1.08992 * 109.47718 * 300.00082 * 26 24 23 47 47 H 1.09000 * 109.47486 * 299.99829 * 27 2 1 48 48 H 1.09001 * 109.47362 * 60.00551 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2488 6 1 3.9338 0.3058 1.2486 7 6 4.0801 -1.4436 2.4978 8 6 3.6820 -0.6654 3.7254 9 8 3.0519 0.3647 3.6126 10 7 4.0252 -1.1148 4.9488 11 16 3.5873 -0.2602 6.2979 12 8 4.1318 -1.0064 7.3776 13 8 4.0235 1.0654 6.0299 14 6 1.7752 -0.3423 6.3172 15 6 1.2510 0.4093 7.5136 16 1 1.9392 0.8881 8.1945 17 6 -0.1071 0.4848 7.7396 18 7 -0.5645 1.1403 8.7839 19 14 -1.2973 -0.3440 6.5623 20 1 -1.5510 -1.7359 7.0132 21 1 -2.5765 0.4099 6.5395 22 1 -0.7105 -0.3648 5.1983 23 6 4.0795 -1.4434 -0.0004 24 6 3.5695 -0.7221 -1.2496 25 6 4.0800 0.7202 -1.2499 26 6 4.0795 -1.4433 -2.4988 27 6 2.0399 -0.7213 -1.2493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -0.2074 2.1392 32 1 1.6767 -1.7489 1.2492 33 1 3.6451 -2.4420 2.5435 34 1 5.1664 -1.5221 2.4539 35 1 4.5282 -1.9393 5.0391 36 1 1.3814 0.1067 5.4054 37 1 1.4593 -1.3839 6.3751 38 1 -1.5199 1.1937 8.9427 39 1 5.1696 -1.4433 -0.0009 40 1 3.7159 -2.4709 -0.0002 41 1 5.1700 0.7199 -1.2501 42 1 3.7163 1.2342 -2.1396 43 1 3.7170 1.2343 -0.3599 44 1 3.7161 -2.4710 -2.4988 45 1 3.7158 -0.9297 -3.3888 46 1 5.1694 -1.4433 -2.4990 47 1 1.6766 -1.7490 -1.2493 48 1 1.6767 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835413230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:50 Heat of formation + Delta-G solvation = -179.382041 kcal Electronic energy + Delta-G solvation = -28037.473223 eV Core-core repulsion = 24216.848152 eV Total energy + Delta-G solvation = -3820.625071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57284 -40.21670 -38.14675 -37.08564 -35.56989 -35.36103 -34.98266 -34.39151 -31.85250 -28.84549 -28.12409 -27.40375 -27.08758 -25.18077 -23.39074 -21.38680 -21.28554 -20.66624 -19.64660 -19.44291 -18.53692 -18.26224 -17.62765 -16.68078 -16.47732 -16.13272 -15.99851 -15.90033 -15.72451 -15.09700 -14.76550 -14.70280 -14.50340 -14.36638 -13.86233 -13.65806 -13.56125 -13.40336 -13.24803 -13.18085 -13.14133 -13.03865 -12.68227 -12.61844 -12.56923 -12.45005 -12.39690 -12.24069 -11.93975 -11.90660 -11.83050 -11.63182 -11.53749 -11.33882 -11.24872 -10.97617 -10.96271 -10.76895 -10.58476 -8.49298 -6.65994 -0.81219 1.15304 1.27858 1.32774 1.43629 1.66274 2.23530 2.71708 2.82440 3.19250 3.43151 3.65526 3.76450 3.89108 4.04147 4.12792 4.24187 4.27470 4.37144 4.42671 4.47268 4.49127 4.58509 4.70029 4.78540 4.80086 4.81946 4.87501 4.90645 4.96937 5.04683 5.06716 5.12333 5.14486 5.17885 5.21959 5.28542 5.32068 5.44114 5.46490 5.58005 5.60657 5.65364 5.76120 5.76807 5.82111 6.37486 6.60153 7.02543 8.66033 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003817 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.662923 B = 7334.516472 C = 8730.197932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.056 0.944 4 C -0.122 4.122 5 C -0.079 4.079 6 H 0.064 0.936 7 C -0.131 4.131 8 C 0.523 3.477 9 O -0.528 6.528 10 N -1.041 6.041 11 S 2.608 3.392 12 O -0.981 6.981 13 O -0.987 6.987 14 C -0.472 4.472 15 C -0.556 4.556 16 H 0.042 0.958 17 C 0.028 3.972 18 N -0.930 5.930 19 Si 0.949 3.051 20 H -0.247 1.247 21 H -0.276 1.276 22 H -0.243 1.243 23 C -0.096 4.096 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.096 4.096 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.450 0.550 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.278 0.722 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -12.607 -26.106 30.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.075 0.925 4 C -0.159 4.159 5 C -0.098 4.098 6 H 0.082 0.918 7 C -0.172 4.172 8 C 0.312 3.688 9 O -0.402 6.402 10 N -0.809 5.809 11 S 2.707 3.293 12 O -0.971 6.971 13 O -0.977 6.977 14 C -0.606 4.606 15 C -0.595 4.595 16 H 0.060 0.940 17 C -0.174 4.174 18 N -0.567 5.567 19 Si 0.769 3.231 20 H -0.171 1.171 21 H -0.201 1.201 22 H -0.166 1.166 23 C -0.133 4.133 24 C -0.064 4.064 25 C -0.205 4.205 26 C -0.194 4.194 27 C -0.133 4.133 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.290 0.710 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.178 -11.380 -25.507 29.103 hybrid contribution -1.050 0.003 0.392 1.121 sum 7.128 -11.377 -25.115 28.479 Atomic orbital electron populations 1.21831 0.95696 1.01934 1.01076 1.21118 0.95089 0.99444 0.95418 0.92538 1.21812 0.95442 1.00903 0.97785 1.21044 0.95413 0.99879 0.93459 0.91807 1.22085 1.05785 1.00831 0.88457 1.21815 0.76418 0.84940 0.85651 1.90886 1.38299 1.24667 1.86340 1.54960 1.64465 1.40079 1.21402 1.05009 0.78589 0.73190 0.72527 1.93506 1.78323 1.72493 1.52824 1.93495 1.80990 1.39199 1.83993 1.28138 1.20268 1.06951 1.05221 1.20298 0.94393 1.36357 1.08433 0.93956 1.25970 0.99963 0.94587 0.96894 1.69998 1.15603 1.41741 1.29333 0.85683 0.77650 0.79699 0.80096 1.17088 1.20080 1.16576 1.21619 1.00945 0.99265 0.91462 1.20515 0.94876 0.95304 0.95710 1.21999 1.00984 0.96213 1.01285 1.21813 1.01157 1.00233 0.96163 1.21606 0.94687 1.00604 0.96431 0.94529 0.92149 0.92050 0.93345 0.90997 0.84391 0.84629 0.71037 0.88148 0.86945 0.91312 0.90450 0.90129 0.92336 0.92921 0.93485 0.91999 0.92858 0.92171 0.91236 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.19 71.98 0.66 -2.28 16 2 C -0.09 -1.81 2.45 -10.79 -0.03 -1.83 16 3 H 0.06 1.29 6.43 -2.39 -0.02 1.27 16 4 C -0.12 -2.56 4.22 30.59 0.13 -2.43 16 5 C -0.08 -1.36 1.56 -10.79 -0.02 -1.38 16 6 H 0.06 1.41 6.24 -2.39 -0.01 1.40 16 7 C -0.13 -1.88 5.17 29.85 0.15 -1.73 16 8 C 0.52 13.92 7.29 87.66 0.64 14.56 16 9 O -0.53 -19.46 12.07 13.33 0.16 -19.30 16 10 N -1.04 -27.54 5.60 -173.53 -0.97 -28.52 16 11 S 2.61 108.47 5.03 -56.49 -0.28 108.19 16 12 O -0.98 -43.62 18.08 -127.65 -2.31 -45.93 16 13 O -0.99 -49.37 17.04 -120.72 -2.06 -51.43 16 14 C -0.47 -21.72 4.71 71.24 0.34 -21.38 16 15 C -0.56 -32.74 9.68 25.60 0.25 -32.49 16 16 H 0.04 2.76 7.96 -2.91 -0.02 2.74 16 17 C 0.03 1.62 5.47 84.65 0.46 2.08 16 18 N -0.93 -57.82 13.96 21.45 0.30 -57.52 16 19 Si 0.95 42.42 27.47 68.60 1.88 44.30 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 23 C -0.10 -1.08 4.01 30.59 0.12 -0.96 16 24 C -0.06 -0.81 0.77 -52.20 -0.04 -0.85 16 25 C -0.15 -2.24 7.78 71.98 0.56 -1.68 16 26 C -0.14 -1.33 8.47 71.98 0.61 -0.72 16 27 C -0.10 -1.38 4.01 30.58 0.12 -1.26 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.39 5.95 -2.39 -0.01 1.37 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.45 7.18 8.79 -96.74 -0.85 6.33 16 36 H 0.10 4.58 6.25 -2.39 -0.01 4.56 16 37 H 0.11 4.38 7.57 -2.40 -0.02 4.36 16 38 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.05 0.90 4.81 -2.39 -0.01 0.89 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -83.02 379.22 0.73 -82.30 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.04 Total: 20.24 kcal Atomic # 6 Polarization: -56.31 SS G_CDS: 3.96 Total: -52.34 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -0.67 Total: -86.03 kcal Atomic # 8 Polarization: -112.45 SS G_CDS: -4.20 Total: -116.65 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.30 kcal Atomic # 16 Polarization: 108.47 SS G_CDS: -0.28 Total: 108.19 kcal Total: -83.02 0.73 -82.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.087 kcal (2) G-P(sol) polarization free energy of solvation -83.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds