Wall clock time and date at job start Tue Mar 31 2020 17:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 7 7 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 8 8 C 1.50696 * 109.47324 * 65.00002 * 7 5 4 9 9 O 1.21291 * 119.99773 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00560 * 179.97438 * 8 7 5 11 11 S 1.65595 * 120.00396 * 179.97438 * 10 8 7 12 12 O 1.42109 * 104.28053 * 181.07362 * 11 10 8 13 13 O 1.42099 * 104.28080 * 308.93085 * 11 10 8 14 14 C 1.81401 * 104.44822 * 65.00525 * 11 10 8 15 15 C 1.50707 * 109.46846 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00578 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99374 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99431 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47465 * 60.00440 * 19 17 15 21 21 H 1.48510 * 109.46737 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47101 * 299.99690 * 19 17 15 23 23 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 24 24 C 1.53002 * 109.47128 * 300.00123 * 23 5 4 25 25 C 1.53006 * 109.46886 * 300.00140 * 24 23 5 26 26 C 1.52999 * 109.47628 * 180.02562 * 24 23 5 27 27 C 1.52997 * 109.46978 * 59.99726 * 24 23 5 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 33 33 H 1.09006 * 109.47271 * 185.00395 * 7 5 4 34 34 H 1.09003 * 109.47101 * 304.99753 * 7 5 4 35 35 H 0.97006 * 119.99805 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46671 * 299.99755 * 14 11 10 37 37 H 1.08998 * 109.47293 * 59.99999 * 14 11 10 38 38 H 0.97003 * 119.99697 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47407 * 180.02562 * 23 5 4 40 40 H 1.09002 * 109.47596 * 60.00070 * 23 5 4 41 41 H 1.09000 * 109.46866 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.47261 * 299.99422 * 25 24 23 43 43 H 1.09001 * 109.47377 * 59.99963 * 25 24 23 44 44 H 1.09002 * 109.46716 * 300.00030 * 26 24 23 45 45 H 1.08996 * 109.46929 * 59.99225 * 26 24 23 46 46 H 1.08996 * 109.47050 * 180.02562 * 26 24 23 47 47 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 48 48 H 1.09002 * 109.47497 * 60.00450 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 1 3.9336 0.3056 -1.2488 7 6 4.0799 -1.4437 -2.4979 8 6 3.6818 -0.6657 -3.7255 9 8 3.0525 0.3650 -3.6127 10 7 4.0258 -1.1146 -4.9488 11 16 3.5878 -0.2600 -6.2979 12 8 4.0892 -1.0323 -7.3802 13 8 2.1927 -0.0427 -6.1375 14 6 4.4960 1.3040 -6.1576 15 6 4.1755 2.1789 -7.3421 16 1 3.4941 1.8290 -8.1033 17 6 4.7524 3.4263 -7.4538 18 7 5.5826 3.8522 -6.5270 19 14 4.3547 4.5111 -8.9217 20 1 2.8959 4.7865 -8.9528 21 1 5.0983 5.7914 -8.8068 22 1 4.7544 3.8176 -10.1724 23 6 4.0794 -1.4435 0.0003 24 6 3.5695 -0.7223 1.2495 25 6 4.0801 0.7201 1.2498 26 6 4.0795 -1.4435 2.4988 27 6 2.0395 -0.7216 1.2492 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 5.1662 -1.5224 -2.4539 34 1 3.6449 -2.4422 -2.5435 35 1 4.5294 -1.9388 -5.0391 36 1 4.2022 1.8136 -5.2399 37 1 5.5667 1.1016 -6.1340 38 1 5.9887 4.7296 -6.6059 39 1 5.1694 -1.4436 0.0007 40 1 3.7157 -2.4711 0.0001 41 1 3.7164 1.2340 2.1395 42 1 5.1700 0.7197 1.2500 43 1 3.7171 1.2342 0.3598 44 1 3.7161 -2.4711 2.4988 45 1 5.1694 -1.4436 2.4987 46 1 3.7158 -0.9298 3.3887 47 1 1.6762 -0.2074 2.1390 48 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835413231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:54 Heat of formation + Delta-G solvation = -158.093177 kcal Electronic energy + Delta-G solvation = -27812.344804 eV Core-core repulsion = 23992.642888 eV Total energy + Delta-G solvation = -3819.701917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49236 -39.17916 -36.23305 -35.16056 -34.27083 -34.02871 -33.52966 -33.34640 -29.05555 -27.95914 -27.43289 -26.65136 -26.32825 -23.55895 -22.19741 -20.57031 -20.25914 -19.10824 -18.67889 -17.47643 -17.05839 -16.44926 -15.83776 -15.38811 -15.18796 -14.94141 -14.91497 -14.54381 -14.27978 -14.05560 -13.91458 -13.59051 -12.93668 -12.61533 -12.53246 -12.49763 -12.29576 -12.17948 -12.06363 -11.84959 -11.78352 -11.71944 -11.47471 -11.41340 -11.27475 -11.18680 -11.00999 -10.90250 -10.88523 -10.76849 -10.65421 -10.46611 -10.29929 -10.13311 -9.99798 -9.87302 -9.55613 -9.15346 -8.70011 -6.32845 -4.44011 1.05817 2.44476 3.21288 3.24713 3.27164 3.31849 4.21877 4.35404 4.45486 4.50391 4.58390 4.71450 4.85012 4.95979 5.01597 5.06024 5.18379 5.19510 5.25799 5.28467 5.37096 5.41358 5.48948 5.53194 5.55003 5.60418 5.65479 5.69188 5.74532 5.80387 5.80757 5.90399 5.97006 5.99805 6.09070 6.22152 6.23766 6.29152 6.34932 6.55264 6.57296 6.59313 6.76948 7.04046 7.41765 7.73761 7.84720 8.56884 9.23254 10.78866 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.003135 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.784922 B = 8929.627065 C = 9403.458172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.078 4.078 6 H 0.087 0.913 7 C -0.140 4.140 8 C 0.530 3.470 9 O -0.484 6.484 10 N -1.063 6.063 11 S 2.553 3.447 12 O -0.972 6.972 13 O -0.954 6.954 14 C -0.403 4.403 15 C -0.536 4.536 16 H 0.070 0.930 17 C 0.078 3.922 18 N -0.877 5.877 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.102 4.102 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.101 4.101 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.424 0.576 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.269 0.731 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -11.720 17.796 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.097 4.097 6 H 0.105 0.895 7 C -0.181 4.181 8 C 0.316 3.684 9 O -0.355 6.355 10 N -0.823 5.823 11 S 2.656 3.344 12 O -0.962 6.962 13 O -0.944 6.944 14 C -0.540 4.540 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.140 4.140 24 C -0.064 4.064 25 C -0.205 4.205 26 C -0.198 4.198 27 C -0.139 4.139 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.257 0.743 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.213 -11.179 17.321 20.734 hybrid contribution 0.652 0.379 -0.441 0.874 sum -1.561 -10.799 16.880 20.100 Atomic orbital electron populations 1.21817 0.95532 1.01448 1.01633 1.21145 0.95186 1.00161 0.94564 0.90733 1.21813 0.94246 1.00456 0.99062 1.21044 0.96432 1.00482 0.91769 0.89472 1.21894 1.03420 1.00382 0.92427 1.20635 0.77437 0.85544 0.84787 1.90879 1.35663 1.22881 1.86036 1.55507 1.65390 1.38129 1.23230 1.07096 0.76629 0.78538 0.72185 1.93517 1.82032 1.70149 1.50547 1.93525 1.30393 1.86328 1.84132 1.27591 1.08031 1.10961 1.07431 1.20249 1.30326 1.01543 1.05393 0.91231 1.24915 0.93932 0.97217 0.96817 1.69946 1.28238 1.19665 1.33434 0.86407 0.79198 0.79246 0.81964 1.19356 1.20662 1.19420 1.21647 1.00146 0.98880 0.93284 1.20513 0.95425 0.95747 0.94737 1.22008 1.00764 0.95537 1.02211 1.21858 1.00831 0.99985 0.97077 1.21658 0.94134 1.00412 0.97664 0.93097 0.92384 0.93057 0.92670 0.89562 0.88078 0.88385 0.74253 0.88349 0.89810 0.92111 0.91884 0.91947 0.93009 0.92823 0.91486 0.92886 0.92752 0.92854 0.92371 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.09 -0.98 2.45 -90.62 -0.22 -1.20 16 3 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 4 C -0.12 -1.41 4.22 -26.74 -0.11 -1.52 16 5 C -0.08 -0.85 1.56 -90.62 -0.14 -0.99 16 6 H 0.09 1.09 6.24 -51.93 -0.32 0.77 16 7 C -0.14 -1.44 5.17 -27.89 -0.14 -1.59 16 8 C 0.53 8.22 7.28 -10.99 -0.08 8.14 16 9 O -0.48 -9.50 12.07 -11.56 -0.14 -9.64 16 10 N -1.06 -16.48 5.60 31.22 0.17 -16.31 16 11 S 2.55 55.10 5.03 -107.50 -0.54 54.56 16 12 O -0.97 -22.28 18.08 -57.54 -1.04 -23.32 16 13 O -0.95 -23.64 17.04 -64.78 -1.10 -24.75 16 14 C -0.40 -10.02 5.64 36.01 0.20 -9.81 16 15 C -0.54 -15.06 9.13 -34.44 -0.31 -15.38 16 16 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 17 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 18 N -0.88 -25.08 13.29 55.43 0.74 -24.34 16 19 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.10 -0.87 4.01 -26.73 -0.11 -0.97 16 24 C -0.06 -0.54 0.77 -154.51 -0.12 -0.66 16 25 C -0.15 -1.36 7.78 37.16 0.29 -1.07 16 26 C -0.14 -1.01 8.47 37.16 0.31 -0.70 16 27 C -0.10 -0.89 4.01 -26.73 -0.11 -1.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.31 5.95 -51.93 -0.31 1.00 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.42 4.68 8.79 -34.47 -0.30 4.37 16 36 H 0.10 2.55 7.19 -51.92 -0.37 2.18 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.71 4.81 -51.93 -0.25 0.46 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -34.82 382.83 -9.66 -44.48 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.20 Total: 3.20 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -0.30 Total: -25.83 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.91 Total: -40.65 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.28 Total: -57.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.54 Total: 54.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.82 -9.66 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.614 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds