Wall clock time and date at job start Tue Mar 31 2020 17:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 7 7 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 8 8 C 1.50696 * 109.47324 * 65.00002 * 7 5 4 9 9 O 1.21291 * 119.99773 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00560 * 179.97438 * 8 7 5 11 11 S 1.65595 * 120.00396 * 179.97438 * 10 8 7 12 12 O 1.42109 * 104.28053 * 181.07362 * 11 10 8 13 13 O 1.42099 * 104.28080 * 308.93085 * 11 10 8 14 14 C 1.81401 * 104.44822 * 65.00525 * 11 10 8 15 15 C 1.50707 * 109.46846 * 180.02562 * 14 11 10 16 16 H 1.07997 * 120.00578 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99374 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99431 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47465 * 60.00440 * 19 17 15 21 21 H 1.48510 * 109.46737 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47101 * 299.99690 * 19 17 15 23 23 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 24 24 C 1.53002 * 109.47128 * 300.00123 * 23 5 4 25 25 C 1.53006 * 109.46886 * 300.00140 * 24 23 5 26 26 C 1.52999 * 109.47628 * 180.02562 * 24 23 5 27 27 C 1.52997 * 109.46978 * 59.99726 * 24 23 5 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 33 33 H 1.09006 * 109.47271 * 185.00395 * 7 5 4 34 34 H 1.09003 * 109.47101 * 304.99753 * 7 5 4 35 35 H 0.97006 * 119.99805 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46671 * 299.99755 * 14 11 10 37 37 H 1.08998 * 109.47293 * 59.99999 * 14 11 10 38 38 H 0.97003 * 119.99697 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.47407 * 180.02562 * 23 5 4 40 40 H 1.09002 * 109.47596 * 60.00070 * 23 5 4 41 41 H 1.09000 * 109.46866 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.47261 * 299.99422 * 25 24 23 43 43 H 1.09001 * 109.47377 * 59.99963 * 25 24 23 44 44 H 1.09002 * 109.46716 * 300.00030 * 26 24 23 45 45 H 1.08996 * 109.46929 * 59.99225 * 26 24 23 46 46 H 1.08996 * 109.47050 * 180.02562 * 26 24 23 47 47 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 48 48 H 1.09002 * 109.47497 * 60.00450 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 1 3.9336 0.3056 -1.2488 7 6 4.0799 -1.4437 -2.4979 8 6 3.6818 -0.6657 -3.7255 9 8 3.0525 0.3650 -3.6127 10 7 4.0258 -1.1146 -4.9488 11 16 3.5878 -0.2600 -6.2979 12 8 4.0892 -1.0323 -7.3802 13 8 2.1927 -0.0427 -6.1375 14 6 4.4960 1.3040 -6.1576 15 6 4.1755 2.1789 -7.3421 16 1 3.4941 1.8290 -8.1033 17 6 4.7524 3.4263 -7.4538 18 7 5.5826 3.8522 -6.5270 19 14 4.3547 4.5111 -8.9217 20 1 2.8959 4.7865 -8.9528 21 1 5.0983 5.7914 -8.8068 22 1 4.7544 3.8176 -10.1724 23 6 4.0794 -1.4435 0.0003 24 6 3.5695 -0.7223 1.2495 25 6 4.0801 0.7201 1.2498 26 6 4.0795 -1.4435 2.4988 27 6 2.0395 -0.7216 1.2492 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 5.1662 -1.5224 -2.4539 34 1 3.6449 -2.4422 -2.5435 35 1 4.5294 -1.9388 -5.0391 36 1 4.2022 1.8136 -5.2399 37 1 5.5667 1.1016 -6.1340 38 1 5.9887 4.7296 -6.6059 39 1 5.1694 -1.4436 0.0007 40 1 3.7157 -2.4711 0.0001 41 1 3.7164 1.2340 2.1395 42 1 5.1700 0.7197 1.2500 43 1 3.7171 1.2342 0.3598 44 1 3.7161 -2.4711 2.4988 45 1 5.1694 -1.4436 2.4987 46 1 3.7158 -0.9298 3.3887 47 1 1.6762 -0.2074 2.1390 48 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835413231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:53 Heat of formation + Delta-G solvation = -181.906668 kcal Electronic energy + Delta-G solvation = -27813.377435 eV Core-core repulsion = 23992.642888 eV Total energy + Delta-G solvation = -3820.734547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55756 -40.20716 -38.09325 -37.04643 -35.56263 -35.41651 -34.98275 -34.39172 -31.11391 -28.84426 -28.12781 -27.39902 -27.08823 -25.63469 -23.38296 -21.38673 -21.28521 -20.67737 -19.49373 -19.23338 -18.45132 -18.26661 -17.51657 -16.69097 -16.49531 -16.15856 -15.99041 -15.84909 -15.73635 -15.09868 -14.70273 -14.52612 -14.49176 -14.14525 -13.82334 -13.57054 -13.51449 -13.39961 -13.21958 -13.15485 -13.09342 -13.04886 -12.74655 -12.61879 -12.57215 -12.55548 -12.44886 -12.29395 -11.93208 -11.89559 -11.81972 -11.63653 -11.53601 -11.33919 -11.06150 -10.96061 -10.80783 -10.76947 -10.58960 -8.44538 -6.63864 -0.71903 1.18233 1.35481 1.39794 1.47701 1.67353 2.28438 2.76923 2.89644 3.22060 3.46524 3.65180 3.76380 3.89354 4.07004 4.12432 4.24031 4.28144 4.42498 4.48318 4.57800 4.64259 4.69428 4.74239 4.77386 4.80281 4.81605 4.87130 4.90537 4.96573 5.04393 5.06805 5.12158 5.17973 5.21627 5.26604 5.28302 5.31990 5.43701 5.46301 5.57722 5.60893 5.65760 5.66509 5.75660 5.83621 6.45346 6.62630 7.07803 8.68128 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.003135 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.784922 B = 8929.627065 C = 9403.458172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.054 0.946 4 C -0.118 4.118 5 C -0.079 4.079 6 H 0.061 0.939 7 C -0.130 4.130 8 C 0.522 3.478 9 O -0.529 6.529 10 N -1.044 6.044 11 S 2.598 3.402 12 O -0.983 6.983 13 O -0.987 6.987 14 C -0.420 4.420 15 C -0.571 4.571 16 H 0.066 0.934 17 C 0.026 3.974 18 N -0.907 5.907 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.095 4.095 24 C -0.064 4.064 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.095 4.095 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.447 0.553 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.275 0.725 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -13.940 18.964 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.072 0.928 4 C -0.156 4.156 5 C -0.098 4.098 6 H 0.079 0.921 7 C -0.171 4.171 8 C 0.311 3.689 9 O -0.403 6.403 10 N -0.810 5.810 11 S 2.698 3.302 12 O -0.974 6.974 13 O -0.978 6.978 14 C -0.555 4.555 15 C -0.609 4.609 16 H 0.085 0.915 17 C -0.178 4.178 18 N -0.543 5.543 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.182 1.182 23 C -0.133 4.133 24 C -0.064 4.064 25 C -0.205 4.205 26 C -0.193 4.193 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.287 0.713 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.443 -13.412 18.478 22.878 hybrid contribution 0.410 1.048 -0.724 1.338 sum -1.033 -12.364 17.753 21.659 Atomic orbital electron populations 1.21812 0.95424 1.01978 1.01112 1.21123 0.95337 0.99308 0.95354 0.92790 1.21765 0.95324 1.00739 0.97739 1.21038 0.95555 0.99756 0.93474 0.92069 1.22071 1.05738 1.00714 0.88623 1.21786 0.76147 0.85268 0.85700 1.90886 1.37743 1.25272 1.86358 1.54956 1.65680 1.38564 1.21846 1.05411 0.75092 0.77064 0.72659 1.93492 1.82037 1.69584 1.52265 1.93482 1.32342 1.86743 1.85191 1.27648 1.08832 1.13585 1.05446 1.20705 1.30732 1.02936 1.06566 0.91542 1.25874 0.93614 0.98585 0.99732 1.70030 1.28936 1.20294 1.35060 0.85482 0.79193 0.77833 0.78713 1.19020 1.19195 1.18170 1.21621 1.00917 0.99271 0.91465 1.20530 0.95022 0.95177 0.95705 1.22002 1.00944 0.96346 1.01245 1.21809 1.01125 1.00265 0.96093 1.21606 0.94534 1.00652 0.96406 0.92043 0.94497 0.91941 0.91129 0.93675 0.84565 0.84756 0.71322 0.90423 0.89682 0.91639 0.90558 0.90031 0.92781 0.92474 0.93697 0.91862 0.92264 0.92739 0.91975 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -1.98 2.45 -10.79 -0.03 -2.01 16 3 H 0.05 1.35 6.43 -2.39 -0.02 1.34 16 4 C -0.12 -2.78 4.22 30.59 0.13 -2.65 16 5 C -0.08 -1.61 1.56 -10.80 -0.02 -1.63 16 6 H 0.06 1.58 6.24 -2.39 -0.01 1.56 16 7 C -0.13 -2.33 5.17 29.85 0.15 -2.17 16 8 C 0.52 15.91 7.28 87.66 0.64 16.55 16 9 O -0.53 -21.69 12.07 13.30 0.16 -21.53 16 10 N -1.04 -31.29 5.60 -173.53 -0.97 -32.26 16 11 S 2.60 113.33 5.03 -56.49 -0.28 113.04 16 12 O -0.98 -44.64 18.08 -127.65 -2.31 -46.94 16 13 O -0.99 -50.12 17.04 -120.72 -2.06 -52.17 16 14 C -0.42 -21.68 5.64 71.24 0.40 -21.27 16 15 C -0.57 -33.04 9.13 25.60 0.23 -32.81 16 16 H 0.07 3.76 7.71 -2.91 -0.02 3.73 16 17 C 0.03 1.45 5.46 84.66 0.46 1.91 16 18 N -0.91 -53.03 13.29 21.45 0.28 -52.74 16 19 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 C -0.10 -1.31 4.01 30.60 0.12 -1.19 16 24 C -0.06 -0.94 0.77 -52.18 -0.04 -0.98 16 25 C -0.15 -2.63 7.78 71.98 0.56 -2.07 16 26 C -0.14 -1.53 8.47 71.98 0.61 -0.92 16 27 C -0.09 -1.50 4.01 30.59 0.12 -1.37 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.44 5.95 -2.39 -0.01 1.43 16 33 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.45 8.73 8.79 -96.74 -0.85 7.88 16 36 H 0.08 4.27 7.19 -2.39 -0.02 4.26 16 37 H 0.09 4.23 8.14 -2.39 -0.02 4.21 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.04 0.99 4.81 -2.39 -0.01 0.98 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.74 382.83 0.96 -77.78 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.09 Total: 22.10 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 4.01 Total: -52.95 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -0.69 Total: -85.00 kcal Atomic # 8 Polarization: -116.44 SS G_CDS: -4.20 Total: -120.65 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 113.33 SS G_CDS: -0.28 Total: 113.04 kcal Total: -78.74 0.96 -77.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.127 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds