Wall clock time and date at job start Tue Mar 31 2020 17:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49343 * 2 1 4 4 C 1.53222 * 109.49343 * 239.94471 * 2 1 3 5 5 N 1.47121 * 108.71957 * 185.94513 * 4 2 1 6 6 C 1.34772 * 121.04649 * 232.13016 * 5 4 2 7 7 O 1.21598 * 120.00151 * 184.02319 * 6 5 4 8 8 C 1.47539 * 120.00045 * 4.02608 * 6 5 4 9 9 C 1.39660 * 120.19605 * 307.15534 * 8 6 5 10 10 C 1.37826 * 119.91883 * 180.27314 * 9 8 6 11 11 C 1.38571 * 120.32300 * 359.49342 * 10 9 8 12 12 C 1.38029 * 120.40038 * 0.50585 * 11 10 9 13 13 C 1.38826 * 120.07311 * 359.74923 * 12 11 10 14 14 O 1.35517 * 120.16313 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00053 * 5.84912 * 14 13 12 16 16 H 1.08004 * 119.99581 * 355.27686 * 15 14 13 17 17 C 1.38698 * 120.00024 * 175.28647 * 15 14 13 18 18 N 1.31517 * 119.99754 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46867 * 90.00866 * 19 17 15 21 21 H 1.48501 * 109.47144 * 210.00368 * 19 17 15 22 22 H 1.48497 * 109.47452 * 330.00485 * 19 17 15 23 23 C 1.47324 * 117.90975 * 52.41455 * 5 4 2 24 24 C 1.53383 * 107.82568 * 311.17494 * 23 5 4 25 25 C 1.53347 * 113.42822 * 179.97438 * 24 23 5 26 26 C 1.53860 * 86.97186 * 89.45581 * 25 24 23 27 27 C 1.53380 * 113.56725 * 277.81388 * 24 23 5 28 28 O 1.42580 * 112.70898 * 48.89399 * 24 23 5 29 29 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46903 * 300.05117 * 1 2 3 31 31 H 1.08993 * 109.47087 * 60.05599 * 1 2 3 32 32 H 1.09007 * 109.59093 * 66.17977 * 4 2 1 33 33 H 1.08997 * 109.72341 * 305.80049 * 4 2 1 34 34 H 1.08002 * 120.04189 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.84119 * 179.72381 * 10 9 8 36 36 H 1.07998 * 119.79877 * 180.25790 * 11 10 9 37 37 H 1.07999 * 119.96503 * 179.77192 * 12 11 10 38 38 H 0.97000 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.75289 * 70.87724 * 23 5 4 40 40 H 1.09007 * 109.74389 * 191.60395 * 23 5 4 41 41 H 1.08999 * 113.63696 * 203.98020 * 25 24 23 42 42 H 1.09001 * 113.62849 * 334.94102 * 25 24 23 43 43 H 1.08996 * 113.60276 * 270.56533 * 26 25 24 44 44 H 1.09001 * 113.67884 * 139.70507 * 26 25 24 45 45 H 1.08998 * 113.63372 * 25.20159 * 27 24 23 46 46 H 1.09006 * 113.63244 * 156.07187 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2502 5 7 3.5053 -0.8396 -1.1629 6 6 4.2967 -0.4284 -2.1733 7 8 5.4990 -0.6000 -2.1125 8 6 3.7043 0.2300 -3.3533 9 6 2.6583 -0.3816 -4.0477 10 6 2.1129 0.2360 -5.1526 11 6 2.5903 1.4672 -5.5728 12 6 3.6235 2.0836 -4.8963 13 6 4.1886 1.4739 -3.7844 14 8 5.2035 2.0772 -3.1192 15 6 5.5383 3.3225 -3.5126 16 1 5.0573 3.7647 -4.3725 17 6 6.5006 4.0355 -2.8131 18 7 6.8276 5.2501 -3.1972 19 14 7.3321 3.2707 -1.3255 20 1 8.5483 2.5379 -1.7605 21 1 7.7143 4.3395 -0.3680 22 1 6.3950 2.3267 -0.6653 23 6 4.0788 -1.4255 0.0612 24 6 3.4295 -0.7292 1.2638 25 6 3.9378 -1.2461 2.6151 26 6 5.0320 -0.1683 2.5235 27 6 4.0737 0.6180 1.6137 28 8 2.0080 -0.6758 1.1674 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5146 0.8896 31 1 -0.3633 0.5129 -0.8904 32 1 1.7723 -0.1521 -2.1387 33 1 1.5982 -1.7177 -1.3069 34 1 2.2804 -1.3396 -3.7223 35 1 1.3070 -0.2402 -5.6914 36 1 2.1539 1.9454 -6.4372 37 1 3.9926 3.0414 -5.2321 38 1 7.5003 5.7490 -2.7078 39 1 3.8669 -2.4942 0.0922 40 1 5.1564 -1.2624 0.0776 41 1 3.2369 -1.0887 3.4349 42 1 4.3237 -2.2647 2.5761 43 1 5.9360 -0.5061 2.0169 44 1 5.2385 0.3275 3.4720 45 1 4.5687 1.0981 0.7696 46 1 3.4099 1.2924 2.1549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843738121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:52 Heat of formation + Delta-G solvation = -45.697947 kcal Electronic energy + Delta-G solvation = -30147.234951 eV Core-core repulsion = 26196.962905 eV Total energy + Delta-G solvation = -3950.272045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85820 -39.60200 -38.16217 -36.87212 -36.58429 -34.49554 -32.52586 -31.85959 -30.88476 -29.32975 -27.71655 -26.23782 -25.86062 -25.38070 -23.89211 -22.78826 -21.50473 -21.29065 -19.62284 -18.66450 -18.04171 -17.51208 -17.05419 -16.69957 -15.96825 -15.60282 -15.12883 -14.87016 -14.72888 -14.50825 -14.13406 -14.07462 -13.84568 -13.79558 -13.17253 -13.11206 -12.78617 -12.54026 -12.46214 -12.34877 -12.30275 -12.14868 -12.06579 -11.48613 -11.44761 -11.26587 -11.18019 -10.94522 -10.84027 -10.79829 -10.74403 -10.36768 -10.21821 -9.74519 -9.68977 -9.25468 -8.97417 -8.44197 -8.31052 -7.56705 -6.53504 -4.19728 1.62138 2.09169 3.02243 3.20368 3.26543 3.28763 3.43319 3.55542 4.20147 4.30680 4.45094 4.48308 4.61776 4.63268 4.74028 4.83688 4.92079 4.99278 5.03308 5.21066 5.23790 5.35235 5.42742 5.48402 5.59247 5.60703 5.62735 5.65000 5.70275 5.77586 5.82055 5.87260 5.88972 6.00616 6.03988 6.10274 6.15252 6.27043 6.29843 6.44802 6.62110 6.79577 6.93020 7.08854 7.22291 7.40502 7.57199 7.68025 7.88430 8.59856 8.81112 9.41546 10.52489 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.006069 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.878232 B = 4612.778667 C = 6467.284008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.066 0.934 4 C 0.075 3.925 5 N -0.617 5.617 6 C 0.581 3.419 7 O -0.526 6.526 8 C -0.216 4.216 9 C -0.048 4.048 10 C -0.213 4.213 11 C -0.055 4.055 12 C -0.221 4.221 13 C 0.198 3.802 14 O -0.190 6.190 15 C -0.394 4.394 16 H 0.110 0.890 17 C 0.071 3.929 18 N -0.869 5.869 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.256 1.256 23 C 0.112 3.888 24 C 0.079 3.921 25 C -0.114 4.114 26 C -0.140 4.140 27 C -0.163 4.163 28 O -0.363 6.363 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.282 0.718 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 -11.327 7.191 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.048 4.048 5 N -0.353 5.353 6 C 0.372 3.628 7 O -0.402 6.402 8 C -0.221 4.221 9 C -0.067 4.067 10 C -0.232 4.232 11 C -0.073 4.073 12 C -0.240 4.240 13 C 0.142 3.858 14 O -0.092 6.092 15 C -0.469 4.469 16 H 0.127 0.873 17 C -0.134 4.134 18 N -0.505 5.505 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.180 1.180 23 C -0.011 4.011 24 C 0.038 3.962 25 C -0.151 4.151 26 C -0.178 4.178 27 C -0.200 4.200 28 O -0.283 6.283 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.993 -11.338 7.578 17.517 hybrid contribution 0.507 0.092 0.199 0.553 sum -10.486 -11.246 7.777 17.231 Atomic orbital electron populations 1.21715 0.92358 1.02915 1.02881 1.22467 0.95181 0.96056 0.84994 0.91605 1.22613 0.80308 1.01618 1.00258 1.48042 1.06584 1.63539 1.17091 1.18246 0.85871 0.76672 0.82051 1.90757 1.14579 1.55103 1.79721 1.18697 1.04150 0.97890 1.01366 1.20741 0.93152 0.98067 0.94715 1.20560 1.04607 0.97770 1.00283 1.20964 0.94543 0.94252 0.97585 1.21265 1.01049 1.03315 0.98380 1.18916 0.86213 0.90407 0.90305 1.83615 1.42187 1.29924 1.53480 1.20841 1.23398 0.87465 1.15160 0.87288 1.24455 0.95908 0.94533 0.98516 1.69621 1.30973 1.09675 1.40259 0.86197 0.80667 0.78862 0.81477 1.19570 1.20813 1.17991 1.21925 1.00089 0.96672 0.82445 1.23133 0.81125 0.96853 0.95057 1.22946 0.97530 0.99225 0.95435 1.22734 0.97129 0.97487 1.00441 1.23472 0.98951 0.96944 1.00659 1.87900 1.19852 1.77856 1.42659 0.91743 0.91601 0.90628 0.87453 0.90976 0.86461 0.86790 0.86708 0.84331 0.90788 0.90947 0.87979 0.88928 0.90607 0.89677 0.90651 0.90578 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16 2 C 0.07 0.92 3.30 -26.62 -0.09 0.83 16 3 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 4 C 0.08 1.00 4.89 -3.59 -0.02 0.99 16 5 N -0.62 -10.31 3.02 -173.38 -0.52 -10.83 16 6 C 0.58 12.09 6.90 -12.47 -0.09 12.00 16 7 O -0.53 -12.94 16.22 0.59 0.01 -12.93 16 8 C -0.22 -4.38 4.94 -104.81 -0.52 -4.90 16 9 C -0.05 -0.77 7.43 -39.20 -0.29 -1.06 16 10 C -0.21 -3.20 10.02 -39.61 -0.40 -3.59 16 11 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 12 C -0.22 -4.54 9.16 -39.44 -0.36 -4.90 16 13 C 0.20 4.57 6.64 -38.60 -0.26 4.32 16 14 O -0.19 -5.12 7.75 -3.89 -0.03 -5.15 16 15 C -0.39 -11.03 9.95 30.90 0.31 -10.72 16 16 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 17 C 0.07 2.00 5.49 -17.52 -0.10 1.91 16 18 N -0.87 -24.83 13.96 55.48 0.77 -24.05 16 19 Si 0.90 22.65 28.62 -169.99 -4.86 17.79 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.11 1.67 5.66 -3.39 -0.02 1.65 16 24 C 0.08 1.07 1.25 -90.05 -0.11 0.96 16 25 C -0.11 -1.25 7.50 -26.10 -0.20 -1.44 16 26 C -0.14 -1.69 7.73 -25.89 -0.20 -1.89 16 27 C -0.16 -2.39 6.91 -26.14 -0.18 -2.57 16 28 O -0.36 -4.97 10.16 -35.23 -0.36 -5.33 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 1.44 4.81 -51.93 -0.25 1.19 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 1.55 7.28 -52.49 -0.38 1.17 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.14 2.96 5.64 -52.49 -0.30 2.67 16 38 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.70 6.40 -51.93 -0.33 1.37 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.08 1.06 7.68 -51.93 -0.40 0.66 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -32.08 369.18 -8.53 -40.61 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.55 Total: 5.06 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.55 Total: -10.73 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.25 Total: -34.88 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.38 Total: -23.41 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.86 Total: 17.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.08 -8.53 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843738121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.084 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds