Wall clock time and date at job start Tue Mar 31 2020 17:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49343 * 2 1 4 4 C 1.53222 * 109.49343 * 239.94471 * 2 1 3 5 5 N 1.47121 * 108.71957 * 185.94513 * 4 2 1 6 6 C 1.34772 * 121.04649 * 232.13016 * 5 4 2 7 7 O 1.21598 * 120.00151 * 184.02319 * 6 5 4 8 8 C 1.47539 * 120.00045 * 4.02608 * 6 5 4 9 9 C 1.39660 * 120.19605 * 307.15534 * 8 6 5 10 10 C 1.37826 * 119.91883 * 180.27314 * 9 8 6 11 11 C 1.38571 * 120.32300 * 359.49342 * 10 9 8 12 12 C 1.38029 * 120.40038 * 0.50585 * 11 10 9 13 13 C 1.38826 * 120.07311 * 359.74923 * 12 11 10 14 14 O 1.35517 * 120.16313 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00053 * 5.84912 * 14 13 12 16 16 H 1.08004 * 119.99581 * 355.27686 * 15 14 13 17 17 C 1.38698 * 120.00024 * 175.28647 * 15 14 13 18 18 N 1.31517 * 119.99754 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46867 * 90.00866 * 19 17 15 21 21 H 1.48501 * 109.47144 * 210.00368 * 19 17 15 22 22 H 1.48497 * 109.47452 * 330.00485 * 19 17 15 23 23 C 1.47324 * 117.90975 * 52.41455 * 5 4 2 24 24 C 1.53383 * 107.82568 * 311.17494 * 23 5 4 25 25 C 1.53347 * 113.42822 * 179.97438 * 24 23 5 26 26 C 1.53860 * 86.97186 * 89.45581 * 25 24 23 27 27 C 1.53380 * 113.56725 * 277.81388 * 24 23 5 28 28 O 1.42580 * 112.70898 * 48.89399 * 24 23 5 29 29 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46903 * 300.05117 * 1 2 3 31 31 H 1.08993 * 109.47087 * 60.05599 * 1 2 3 32 32 H 1.09007 * 109.59093 * 66.17977 * 4 2 1 33 33 H 1.08997 * 109.72341 * 305.80049 * 4 2 1 34 34 H 1.08002 * 120.04189 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.84119 * 179.72381 * 10 9 8 36 36 H 1.07998 * 119.79877 * 180.25790 * 11 10 9 37 37 H 1.07999 * 119.96503 * 179.77192 * 12 11 10 38 38 H 0.97000 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.75289 * 70.87724 * 23 5 4 40 40 H 1.09007 * 109.74389 * 191.60395 * 23 5 4 41 41 H 1.08999 * 113.63696 * 203.98020 * 25 24 23 42 42 H 1.09001 * 113.62849 * 334.94102 * 25 24 23 43 43 H 1.08996 * 113.60276 * 270.56533 * 26 25 24 44 44 H 1.09001 * 113.67884 * 139.70507 * 26 25 24 45 45 H 1.08998 * 113.63372 * 25.20159 * 27 24 23 46 46 H 1.09006 * 113.63244 * 156.07187 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2502 5 7 3.5053 -0.8396 -1.1629 6 6 4.2967 -0.4284 -2.1733 7 8 5.4990 -0.6000 -2.1125 8 6 3.7043 0.2300 -3.3533 9 6 2.6583 -0.3816 -4.0477 10 6 2.1129 0.2360 -5.1526 11 6 2.5903 1.4672 -5.5728 12 6 3.6235 2.0836 -4.8963 13 6 4.1886 1.4739 -3.7844 14 8 5.2035 2.0772 -3.1192 15 6 5.5383 3.3225 -3.5126 16 1 5.0573 3.7647 -4.3725 17 6 6.5006 4.0355 -2.8131 18 7 6.8276 5.2501 -3.1972 19 14 7.3321 3.2707 -1.3255 20 1 8.5483 2.5379 -1.7605 21 1 7.7143 4.3395 -0.3680 22 1 6.3950 2.3267 -0.6653 23 6 4.0788 -1.4255 0.0612 24 6 3.4295 -0.7292 1.2638 25 6 3.9378 -1.2461 2.6151 26 6 5.0320 -0.1683 2.5235 27 6 4.0737 0.6180 1.6137 28 8 2.0080 -0.6758 1.1674 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5146 0.8896 31 1 -0.3633 0.5129 -0.8904 32 1 1.7723 -0.1521 -2.1387 33 1 1.5982 -1.7177 -1.3069 34 1 2.2804 -1.3396 -3.7223 35 1 1.3070 -0.2402 -5.6914 36 1 2.1539 1.9454 -6.4372 37 1 3.9926 3.0414 -5.2321 38 1 7.5003 5.7490 -2.7078 39 1 3.8669 -2.4942 0.0922 40 1 5.1564 -1.2624 0.0776 41 1 3.2369 -1.0887 3.4349 42 1 4.3237 -2.2647 2.5761 43 1 5.9360 -0.5061 2.0169 44 1 5.2385 0.3275 3.4720 45 1 4.5687 1.0981 0.7696 46 1 3.4099 1.2924 2.1549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843738121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:51 Heat of formation + Delta-G solvation = -66.132455 kcal Electronic energy + Delta-G solvation = -30148.121058 eV Core-core repulsion = 26196.962905 eV Total energy + Delta-G solvation = -3951.158152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12559 -41.10463 -39.75001 -38.27907 -37.89691 -35.85800 -34.58097 -32.88882 -32.33333 -30.90334 -28.92701 -27.45463 -27.28170 -26.89471 -25.08097 -24.14075 -23.07521 -22.39262 -21.06678 -19.95733 -19.77106 -19.10626 -18.26464 -18.17522 -17.32749 -16.92274 -16.61142 -16.44188 -15.99027 -15.81821 -15.62247 -15.55914 -15.45527 -15.31074 -14.67217 -14.39956 -14.22880 -14.14904 -13.91823 -13.58060 -13.39471 -13.27190 -13.08367 -13.03478 -12.82759 -12.60949 -12.49593 -12.44624 -12.24295 -12.17332 -11.89010 -11.74007 -11.61944 -11.47998 -11.04064 -10.91617 -10.82576 -9.90264 -9.62575 -9.21024 -8.63270 -6.32578 0.12475 0.57638 1.14382 1.20272 1.37938 1.54036 1.88115 2.15419 2.52326 2.65616 2.92398 3.01600 3.33103 3.42404 3.54651 3.56937 3.71442 3.79706 3.96378 4.02685 4.14693 4.18614 4.24813 4.31913 4.44341 4.46566 4.50250 4.54507 4.63874 4.69431 4.71239 4.74798 4.83952 4.90824 4.92757 4.99784 5.01375 5.08271 5.25460 5.26162 5.29578 5.35394 5.43283 5.57602 5.64802 5.79274 6.10441 6.13785 6.21000 6.72606 7.05429 7.49368 8.47784 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.006069 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.878232 B = 4612.778667 C = 6467.284008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.034 0.966 4 C 0.071 3.929 5 N -0.612 5.612 6 C 0.571 3.429 7 O -0.580 6.580 8 C -0.223 4.223 9 C -0.039 4.039 10 C -0.176 4.176 11 C -0.046 4.046 12 C -0.240 4.240 13 C 0.155 3.845 14 O -0.234 6.234 15 C -0.398 4.398 16 H 0.095 0.905 17 C 0.027 3.973 18 N -0.908 5.908 19 Si 0.953 3.047 20 H -0.276 1.276 21 H -0.258 1.258 22 H -0.280 1.280 23 C 0.106 3.894 24 C 0.077 3.923 25 C -0.093 4.093 26 C -0.138 4.138 27 C -0.174 4.174 28 O -0.360 6.360 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.117 0.883 38 H 0.286 0.714 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.024 0.976 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 -14.730 7.389 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.052 0.948 4 C -0.051 4.051 5 N -0.345 5.345 6 C 0.362 3.638 7 O -0.460 6.460 8 C -0.227 4.227 9 C -0.058 4.058 10 C -0.195 4.195 11 C -0.064 4.064 12 C -0.259 4.259 13 C 0.104 3.896 14 O -0.140 6.140 15 C -0.474 4.474 16 H 0.113 0.887 17 C -0.174 4.174 18 N -0.548 5.548 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.182 1.182 22 H -0.206 1.206 23 C -0.016 4.016 24 C 0.037 3.963 25 C -0.130 4.130 26 C -0.175 4.175 27 C -0.212 4.212 28 O -0.279 6.279 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.043 0.957 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.119 -14.770 7.785 22.524 hybrid contribution 1.412 0.913 -0.030 1.682 sum -13.707 -13.857 7.755 20.977 Atomic orbital electron populations 1.21712 0.89232 1.04350 1.03748 1.22574 0.97458 0.94304 0.84712 0.94760 1.22921 0.77978 1.03637 1.00516 1.48120 1.07984 1.61953 1.16401 1.18512 0.85550 0.76585 0.83165 1.90719 1.16858 1.57472 1.80976 1.19064 1.05038 0.96859 1.01764 1.21254 0.91178 0.99179 0.94163 1.21237 1.03740 0.96051 0.98424 1.21442 0.92465 0.94729 0.97766 1.21319 1.02856 1.03133 0.98595 1.19589 0.86702 0.91894 0.91431 1.83592 1.45300 1.29593 1.55493 1.20814 1.23350 0.88477 1.14736 0.88749 1.24979 0.96806 0.95083 1.00490 1.69662 1.32726 1.10562 1.41878 0.85488 0.78957 0.78100 0.79723 1.20127 1.18226 1.20555 1.22094 0.98902 0.98302 0.82303 1.23184 0.81214 0.95943 0.95996 1.22896 0.96570 0.99755 0.93814 1.22742 0.96775 0.97648 1.00364 1.23525 1.00088 0.97784 0.99752 1.87915 1.19414 1.77620 1.42987 0.89906 0.91393 0.89234 0.87421 0.87375 0.82362 0.81209 0.82811 0.86503 0.90373 0.88039 0.90570 0.87209 0.88390 0.90705 0.88783 0.95732 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.57 71.98 0.69 -1.40 16 2 C 0.07 1.62 3.30 30.67 0.10 1.73 16 3 H 0.03 1.03 7.77 -2.39 -0.02 1.01 16 4 C 0.07 1.70 4.89 86.34 0.42 2.12 16 5 N -0.61 -20.12 3.02 -820.70 -2.48 -22.60 16 6 C 0.57 24.39 6.90 86.70 0.60 24.99 16 7 O -0.58 -30.32 16.22 0.46 0.01 -30.31 16 8 C -0.22 -8.99 4.94 -19.99 -0.10 -9.09 16 9 C -0.04 -1.10 7.43 22.52 0.17 -0.94 16 10 C -0.18 -4.24 10.02 22.25 0.22 -4.02 16 11 C -0.05 -1.36 10.03 22.30 0.22 -1.13 16 12 C -0.24 -10.04 9.16 22.36 0.20 -9.84 16 13 C 0.16 7.52 6.64 22.91 0.15 7.67 16 14 O -0.23 -13.64 7.75 -15.55 -0.12 -13.76 16 15 C -0.40 -24.13 9.95 67.93 0.68 -23.45 16 16 H 0.10 5.77 5.44 -2.91 -0.02 5.76 16 17 C 0.03 1.61 5.49 84.85 0.47 2.08 16 18 N -0.91 -55.06 13.96 21.62 0.30 -54.76 16 19 Si 0.95 50.41 28.62 68.60 1.96 52.37 16 20 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -15.73 7.11 99.48 0.71 -15.02 16 23 C 0.11 3.15 5.66 86.35 0.49 3.64 16 24 C 0.08 2.04 1.25 -10.42 -0.01 2.02 16 25 C -0.09 -1.81 7.50 31.00 0.23 -1.58 16 26 C -0.14 -3.30 7.73 31.14 0.24 -3.06 16 27 C -0.17 -5.34 6.91 30.98 0.21 -5.13 16 28 O -0.36 -9.04 10.16 -148.98 -1.51 -10.55 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.11 2.54 4.81 -2.38 -0.01 2.53 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.16 3.19 7.28 -2.91 -0.02 3.17 16 35 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 38 H 0.29 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 2.67 6.40 -2.38 -0.02 2.66 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 43 H 0.07 1.94 7.68 -2.39 -0.02 1.92 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 45 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 46 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -80.01 369.18 4.14 -75.87 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.99 Total: 19.14 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.99 Total: -15.39 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.18 Total: -77.36 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.63 Total: -54.63 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.96 Total: 52.37 kcal Total: -80.01 4.14 -75.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843738121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.734 kcal (2) G-P(sol) polarization free energy of solvation -80.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds