Wall clock time and date at job start Tue Mar 31 2020 16:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47119 * 2 1 4 4 N 1.46504 * 109.47365 * 119.99962 * 2 1 3 5 5 C 1.46755 * 124.34982 * 119.99956 * 4 2 1 6 6 C 1.54486 * 105.47431 * 196.99657 * 5 4 2 7 7 H 1.08998 * 110.96726 * 92.73931 * 6 5 4 8 8 C 1.52998 * 110.97132 * 216.46673 * 6 5 4 9 9 O 1.45199 * 109.47033 * 184.99909 * 8 6 5 10 10 C 1.34705 * 116.99640 * 179.97438 * 9 8 6 11 11 O 1.21465 * 120.00150 * 0.02562 * 10 9 8 12 12 C 1.47767 * 119.99727 * 180.02562 * 10 9 8 13 13 C 1.39964 * 120.03330 * 359.97438 * 12 10 9 14 14 C 1.38317 * 120.35777 * 179.97438 * 13 12 10 15 15 C 1.37761 * 120.41584 * 359.97438 * 14 13 12 16 16 C 1.40750 * 120.05111 * 0.02562 * 15 14 13 17 17 C 1.41444 * 120.17714 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00389 * 150.19162 * 17 16 15 19 19 C 1.39937 * 119.99789 * 330.18767 * 17 16 15 20 20 N 1.30825 * 120.00243 * 161.72127 * 19 17 16 21 21 Si 1.86808 * 119.99832 * 341.72623 * 19 17 16 22 22 H 1.48501 * 109.46933 * 95.41071 * 21 19 17 23 23 H 1.48494 * 109.46797 * 215.41089 * 21 19 17 24 24 H 1.48498 * 109.47138 * 335.40973 * 21 19 17 25 25 C 1.39061 * 120.02999 * 179.72429 * 12 10 9 26 26 C 1.54628 * 101.76066 * 334.58583 * 6 5 4 27 27 C 1.34423 * 124.34501 * 299.97754 * 4 2 1 28 28 O 1.21276 * 124.94866 * 359.34627 * 27 4 2 29 29 H 1.09007 * 109.46932 * 300.00026 * 1 2 3 30 30 H 1.08995 * 109.47376 * 60.00314 * 1 2 3 31 31 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47558 * 239.99963 * 2 1 3 33 33 H 1.08999 * 109.46936 * 59.99582 * 3 2 1 34 34 H 1.09000 * 109.47236 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47043 * 300.00229 * 3 2 1 36 36 H 1.09004 * 110.24923 * 315.99420 * 5 4 2 37 37 H 1.08996 * 110.24950 * 77.99783 * 5 4 2 38 38 H 1.09000 * 109.47049 * 304.99758 * 8 6 5 39 39 H 1.08999 * 109.47228 * 64.99961 * 8 6 5 40 40 H 1.08002 * 119.82310 * 359.97438 * 13 12 10 41 41 H 1.08004 * 119.79412 * 180.02562 * 14 13 12 42 42 H 1.07996 * 119.97387 * 180.02562 * 15 14 13 43 43 H 0.96998 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20307 * 359.97438 * 25 12 10 45 45 H 1.09008 * 110.48497 * 266.11483 * 26 6 5 46 46 H 1.09004 * 110.48650 * 143.48316 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1727 6 6 2.7614 -2.4950 2.5898 7 1 1.9685 -3.2415 2.6373 8 6 4.0994 -3.0927 3.0295 9 8 3.9356 -3.7558 4.3108 10 6 5.0277 -4.3390 4.8415 11 8 6.0879 -4.2945 4.2503 12 6 4.9360 -5.0329 6.1429 13 6 3.7148 -5.0841 6.8249 14 6 3.6212 -5.7323 8.0432 15 6 4.7280 -6.3353 8.5993 16 6 5.9647 -6.2944 7.9284 17 6 7.1029 -6.9122 8.4971 18 1 7.8768 -7.3110 7.8581 19 6 7.2262 -7.0066 9.8878 20 7 8.0617 -7.8650 10.4137 21 14 6.1975 -5.9070 10.9934 22 1 4.9745 -6.6355 11.4164 23 1 6.9892 -5.5309 12.1921 24 1 5.8111 -4.6806 10.2506 25 6 6.0617 -5.6402 6.6886 26 6 2.4046 -1.2528 3.4387 27 6 1.7484 -0.3079 2.4562 28 8 1.0803 0.6572 2.7611 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.4965 -2.5973 0.4313 37 1 3.8981 -1.6164 0.9541 38 1 4.4359 -3.8159 2.2865 39 1 4.8390 -2.2977 3.1237 40 1 2.8409 -4.6150 6.3976 41 1 2.6743 -5.7666 8.5615 42 1 4.6467 -6.8398 9.5507 43 1 8.1474 -7.9302 11.3777 44 1 7.0050 -5.6072 6.1640 45 1 3.3062 -0.8039 3.8557 46 1 1.7083 -1.5209 4.2334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847756564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:30 Heat of formation + Delta-G solvation = -109.965859 kcal Electronic energy + Delta-G solvation = -27355.556410 eV Core-core repulsion = 23402.497499 eV Total energy + Delta-G solvation = -3953.058911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97534 -39.99998 -37.79728 -36.92774 -36.22823 -35.27675 -33.75640 -31.36273 -30.68664 -30.15215 -28.49299 -27.55138 -26.22096 -25.23345 -23.40689 -22.77705 -21.18472 -20.80695 -20.44105 -19.18002 -17.98803 -17.31799 -16.96082 -16.57701 -16.19348 -15.95840 -15.64306 -15.18218 -14.73571 -14.46232 -14.25937 -14.07954 -13.95488 -13.80930 -13.57967 -13.15650 -12.92879 -12.82793 -12.76613 -12.48634 -12.32483 -12.15046 -12.11410 -11.80317 -11.68511 -11.64603 -11.44898 -11.24434 -11.12980 -10.87122 -10.64452 -10.51654 -10.17084 -9.93830 -9.81163 -9.73853 -9.30040 -9.06570 -8.02484 -7.85030 -7.06050 -4.61805 1.61692 2.35611 2.44802 2.50948 2.93439 3.01264 3.13418 3.18334 3.30530 3.87949 3.97957 4.08059 4.36264 4.38224 4.47148 4.62961 4.68507 4.80733 4.94944 5.04182 5.13418 5.17893 5.22934 5.26199 5.27652 5.34704 5.39636 5.43879 5.49426 5.63693 5.74993 5.83683 5.85928 5.89005 6.08703 6.26624 6.30219 6.55417 6.58240 6.62778 6.81615 6.88736 7.11596 7.32768 7.42290 7.65788 7.82064 7.93020 8.20245 8.21940 8.43659 8.64037 9.95944 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.002102 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.766707 B =13319.773896 C =13752.221469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.619 5.619 5 C 0.111 3.889 6 C -0.099 4.099 7 H 0.105 0.895 8 C 0.076 3.924 9 O -0.351 6.351 10 C 0.514 3.486 11 O -0.518 6.518 12 C -0.097 4.097 13 C -0.192 4.192 14 C -0.089 4.089 15 C -0.212 4.212 16 C 0.078 3.922 17 C -0.443 4.443 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.802 5.802 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.243 1.243 25 C -0.134 4.134 26 C -0.150 4.150 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.287 0.713 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 11.366 -17.015 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.354 5.354 5 C -0.012 4.012 6 C -0.118 4.118 7 H 0.124 0.876 8 C 0.002 3.998 9 O -0.268 6.268 10 C 0.361 3.639 11 O -0.408 6.408 12 C -0.098 4.098 13 C -0.211 4.211 14 C -0.107 4.107 15 C -0.231 4.231 16 C 0.075 3.925 17 C -0.471 4.471 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.425 5.425 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.166 1.166 25 C -0.153 4.153 26 C -0.190 4.190 27 C 0.309 3.691 28 O -0.405 6.405 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.125 0.875 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.511 11.803 -16.940 23.638 hybrid contribution -0.147 0.242 0.441 0.524 sum -11.658 12.045 -16.499 23.520 Atomic orbital electron populations 1.22187 0.94632 1.02439 1.03343 1.20946 0.94516 0.93153 0.86354 1.22192 1.01318 0.95774 1.03369 1.48464 1.51366 1.29256 1.06326 1.22006 0.95531 0.86681 0.97004 1.22112 0.98489 0.97377 0.93812 0.87629 1.22838 0.96093 0.96913 0.84002 1.86581 1.38980 1.65597 1.35645 1.21801 0.80793 0.75321 0.85942 1.90771 1.29816 1.58056 1.62180 1.18748 0.96325 1.03337 0.91389 1.20604 0.95962 1.07234 0.97333 1.20598 0.97401 0.97478 0.95254 1.21273 0.93140 1.06824 1.01882 1.17646 0.92887 0.90348 0.91577 1.19488 1.04586 1.30874 0.92117 0.88782 1.26164 0.94497 0.93935 0.99044 1.69682 1.30928 1.27447 1.14449 0.86336 0.79057 0.82495 0.78616 1.19435 1.21524 1.16629 1.21275 0.96278 0.99853 0.97906 1.22476 1.03449 0.94712 0.98411 1.20932 0.79510 0.84974 0.83686 1.90693 1.39685 1.28631 1.81482 0.90958 0.91457 0.92429 0.89435 0.90910 0.92456 0.91458 0.89690 0.90557 0.90620 0.90860 0.87210 0.87909 0.87662 0.90230 0.86486 0.87505 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.20 37.16 0.34 -0.90 16 2 C 0.15 1.09 3.47 -67.93 -0.24 0.86 16 3 C -0.17 -1.27 9.20 37.16 0.34 -0.93 16 4 N -0.62 -5.22 2.83 -164.84 -0.47 -5.69 16 5 C 0.11 0.71 6.87 -3.12 -0.02 0.69 16 6 C -0.10 -0.80 3.42 -88.98 -0.30 -1.10 16 7 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 8 C 0.08 0.81 4.77 37.16 0.18 0.99 16 9 O -0.35 -5.22 9.42 -40.51 -0.38 -5.60 16 10 C 0.51 9.60 7.90 34.63 0.27 9.87 16 11 O -0.52 -10.56 16.12 -19.24 -0.31 -10.87 16 12 C -0.10 -2.01 5.87 -105.05 -0.62 -2.62 16 13 C -0.19 -3.71 9.62 -38.91 -0.37 -4.09 16 14 C -0.09 -1.78 10.01 -39.73 -0.40 -2.18 16 15 C -0.21 -4.79 7.17 -38.81 -0.28 -5.07 16 16 C 0.08 1.91 5.10 -106.87 -0.55 1.36 16 17 C -0.44 -11.53 9.57 -37.73 -0.36 -11.89 16 18 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.10 5.40 -17.34 -0.09 2.01 16 20 N -0.80 -20.61 13.93 55.55 0.77 -19.84 16 21 Si 0.91 19.80 24.52 -169.99 -4.17 15.64 16 22 H -0.27 -5.61 6.71 56.52 0.38 -5.23 16 23 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.24 -5.42 6.86 56.52 0.39 -5.03 16 25 C -0.13 -3.07 9.34 -38.42 -0.36 -3.43 16 26 C -0.15 -1.44 6.39 -26.74 -0.17 -1.61 16 27 C 0.52 5.76 7.41 -10.86 -0.08 5.68 16 28 O -0.53 -7.66 15.12 5.56 0.08 -7.57 16 29 H 0.07 0.72 6.81 -51.93 -0.35 0.37 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.78 7.93 -51.93 -0.41 0.36 16 40 H 0.11 1.85 7.59 -52.49 -0.40 1.45 16 41 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.11 2.35 4.72 -52.49 -0.25 2.11 16 43 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.12 2.69 7.64 -52.49 -0.40 2.29 16 45 H 0.11 1.02 7.75 -51.92 -0.40 0.62 16 46 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -29.61 378.01 -8.27 -37.88 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.79 Total: 2.70 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.70 Total: -12.35 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.31 Total: -25.52 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.61 Total: -24.04 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.17 Total: 15.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.61 -8.27 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847756564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.087 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds