Wall clock time and date at job start Tue Mar 31 2020 16:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47119 * 2 1 4 4 N 1.46504 * 109.47365 * 119.99962 * 2 1 3 5 5 C 1.46755 * 124.34982 * 119.99956 * 4 2 1 6 6 C 1.54486 * 105.47431 * 196.99657 * 5 4 2 7 7 H 1.08998 * 110.96726 * 92.73931 * 6 5 4 8 8 C 1.52998 * 110.97132 * 216.46673 * 6 5 4 9 9 O 1.45199 * 109.47033 * 184.99909 * 8 6 5 10 10 C 1.34705 * 116.99640 * 179.97438 * 9 8 6 11 11 O 1.21465 * 120.00150 * 0.02562 * 10 9 8 12 12 C 1.47767 * 119.99727 * 180.02562 * 10 9 8 13 13 C 1.39964 * 120.03330 * 359.97438 * 12 10 9 14 14 C 1.38317 * 120.35777 * 179.97438 * 13 12 10 15 15 C 1.37761 * 120.41584 * 359.97438 * 14 13 12 16 16 C 1.40750 * 120.05111 * 0.02562 * 15 14 13 17 17 C 1.41444 * 120.17714 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00389 * 150.19162 * 17 16 15 19 19 C 1.39937 * 119.99789 * 330.18767 * 17 16 15 20 20 N 1.30825 * 120.00243 * 161.72127 * 19 17 16 21 21 Si 1.86808 * 119.99832 * 341.72623 * 19 17 16 22 22 H 1.48501 * 109.46933 * 95.41071 * 21 19 17 23 23 H 1.48494 * 109.46797 * 215.41089 * 21 19 17 24 24 H 1.48498 * 109.47138 * 335.40973 * 21 19 17 25 25 C 1.39061 * 120.02999 * 179.72429 * 12 10 9 26 26 C 1.54628 * 101.76066 * 334.58583 * 6 5 4 27 27 C 1.34423 * 124.34501 * 299.97754 * 4 2 1 28 28 O 1.21276 * 124.94866 * 359.34627 * 27 4 2 29 29 H 1.09007 * 109.46932 * 300.00026 * 1 2 3 30 30 H 1.08995 * 109.47376 * 60.00314 * 1 2 3 31 31 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47558 * 239.99963 * 2 1 3 33 33 H 1.08999 * 109.46936 * 59.99582 * 3 2 1 34 34 H 1.09000 * 109.47236 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47043 * 300.00229 * 3 2 1 36 36 H 1.09004 * 110.24923 * 315.99420 * 5 4 2 37 37 H 1.08996 * 110.24950 * 77.99783 * 5 4 2 38 38 H 1.09000 * 109.47049 * 304.99758 * 8 6 5 39 39 H 1.08999 * 109.47228 * 64.99961 * 8 6 5 40 40 H 1.08002 * 119.82310 * 359.97438 * 13 12 10 41 41 H 1.08004 * 119.79412 * 180.02562 * 14 13 12 42 42 H 1.07996 * 119.97387 * 180.02562 * 15 14 13 43 43 H 0.96998 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20307 * 359.97438 * 25 12 10 45 45 H 1.09008 * 110.48497 * 266.11483 * 26 6 5 46 46 H 1.09004 * 110.48650 * 143.48316 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1727 6 6 2.7614 -2.4950 2.5898 7 1 1.9685 -3.2415 2.6373 8 6 4.0994 -3.0927 3.0295 9 8 3.9356 -3.7558 4.3108 10 6 5.0277 -4.3390 4.8415 11 8 6.0879 -4.2945 4.2503 12 6 4.9360 -5.0329 6.1429 13 6 3.7148 -5.0841 6.8249 14 6 3.6212 -5.7323 8.0432 15 6 4.7280 -6.3353 8.5993 16 6 5.9647 -6.2944 7.9284 17 6 7.1029 -6.9122 8.4971 18 1 7.8768 -7.3110 7.8581 19 6 7.2262 -7.0066 9.8878 20 7 8.0617 -7.8650 10.4137 21 14 6.1975 -5.9070 10.9934 22 1 4.9745 -6.6355 11.4164 23 1 6.9892 -5.5309 12.1921 24 1 5.8111 -4.6806 10.2506 25 6 6.0617 -5.6402 6.6886 26 6 2.4046 -1.2528 3.4387 27 6 1.7484 -0.3079 2.4562 28 8 1.0803 0.6572 2.7611 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.4965 -2.5973 0.4313 37 1 3.8981 -1.6164 0.9541 38 1 4.4359 -3.8159 2.2865 39 1 4.8390 -2.2977 3.1237 40 1 2.8409 -4.6150 6.3976 41 1 2.6743 -5.7666 8.5615 42 1 4.6467 -6.8398 9.5507 43 1 8.1474 -7.9302 11.3777 44 1 7.0050 -5.6072 6.1640 45 1 3.3062 -0.8039 3.8557 46 1 1.7083 -1.5209 4.2334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847756564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:29 Heat of formation + Delta-G solvation = -125.846293 kcal Electronic energy + Delta-G solvation = -27356.245038 eV Core-core repulsion = 23402.497499 eV Total energy + Delta-G solvation = -3953.747538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80755 -41.30388 -39.42629 -37.96838 -37.28596 -36.07995 -35.57309 -32.72151 -31.99380 -31.67110 -29.25148 -28.12983 -27.42142 -26.73952 -24.86291 -23.42347 -22.54304 -21.96414 -21.89718 -19.95355 -19.62395 -18.44284 -18.01350 -17.64234 -17.58791 -17.14130 -16.81090 -16.48087 -16.22309 -15.57939 -15.29333 -15.10633 -14.89077 -14.70127 -14.62486 -14.58736 -14.34266 -13.91651 -13.78523 -13.64854 -13.40620 -13.34297 -12.98313 -12.86425 -12.84500 -12.68870 -12.51911 -12.34163 -12.24809 -12.12134 -11.95559 -11.80889 -11.61886 -11.56717 -11.45295 -11.05271 -10.63755 -9.73303 -9.71286 -9.62719 -8.91435 -6.55188 -0.02276 0.72668 1.26838 1.42100 1.47893 1.52545 1.56400 1.68796 2.04882 2.11512 2.60147 3.25383 3.37102 3.40769 3.59693 3.84677 3.96231 4.05731 4.10155 4.22713 4.25851 4.30415 4.42157 4.44898 4.45642 4.58293 4.59025 4.62127 4.71242 4.76199 4.86096 4.86447 4.88053 4.89728 4.92057 5.05170 5.14368 5.23142 5.29372 5.31465 5.38261 5.63725 5.68518 5.70766 5.82926 6.09169 6.12051 6.28855 6.61805 6.73112 6.79268 7.15147 8.17102 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.002102 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.766707 B =13319.773896 C =13752.221469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 C -0.165 4.165 4 N -0.614 5.614 5 C 0.112 3.888 6 C -0.085 4.085 7 H 0.117 0.883 8 C 0.071 3.929 9 O -0.343 6.343 10 C 0.522 3.478 11 O -0.541 6.541 12 C -0.104 4.104 13 C -0.162 4.162 14 C -0.088 4.088 15 C -0.215 4.215 16 C 0.062 3.938 17 C -0.485 4.485 18 H 0.054 0.946 19 C 0.046 3.954 20 N -0.846 5.846 21 Si 0.963 3.037 22 H -0.247 1.247 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.157 4.157 26 C -0.151 4.151 27 C 0.512 3.488 28 O -0.573 6.573 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.108 0.892 43 H 0.295 0.705 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.652 12.295 -18.672 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.347 5.347 5 C -0.010 4.010 6 C -0.104 4.104 7 H 0.135 0.865 8 C -0.003 4.003 9 O -0.259 6.259 10 C 0.369 3.631 11 O -0.433 6.433 12 C -0.106 4.106 13 C -0.181 4.181 14 C -0.106 4.106 15 C -0.234 4.234 16 C 0.060 3.940 17 C -0.514 4.514 18 H 0.073 0.927 19 C -0.169 4.169 20 N -0.472 5.472 21 Si 0.785 3.215 22 H -0.172 1.172 23 H -0.205 1.205 24 H -0.174 1.174 25 C -0.177 4.177 26 C -0.192 4.192 27 C 0.301 3.699 28 O -0.453 6.453 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.553 12.712 -18.637 26.846 hybrid contribution 0.638 0.071 0.683 0.937 sum -13.915 12.783 -17.953 26.065 Atomic orbital electron populations 1.22143 0.94884 1.02488 1.02639 1.21182 0.94383 0.93123 0.86870 1.22156 1.01326 0.96136 1.02691 1.48596 1.50712 1.29500 1.05910 1.22189 0.96156 0.86277 0.96395 1.22041 0.97186 0.96729 0.94456 0.86484 1.23205 0.97822 0.97069 0.82228 1.86528 1.36853 1.65014 1.37529 1.21367 0.81258 0.75218 0.85278 1.90769 1.30956 1.58884 1.62645 1.18982 0.96122 1.02803 0.92652 1.21125 0.96245 1.04458 0.96320 1.21078 0.98182 0.95996 0.95366 1.21470 0.93183 1.06781 1.01974 1.17740 0.93201 0.90710 0.92381 1.19430 1.05270 1.34040 0.92696 0.92730 1.26862 0.95594 0.94724 0.99686 1.69715 1.33082 1.29193 1.15211 0.85532 0.78548 0.80424 0.77013 1.17179 1.20479 1.17425 1.21222 0.96938 1.01390 0.98135 1.22479 1.03136 0.95146 0.98392 1.21208 0.79170 0.84627 0.84890 1.90672 1.41762 1.30522 1.82316 0.94182 0.89639 0.91941 0.86146 0.94137 0.92301 0.89585 0.86711 0.89226 0.89274 0.90709 0.83397 0.83543 0.87383 0.89427 0.88204 0.87740 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.20 71.98 0.66 -1.44 16 2 C 0.15 1.69 3.47 44.99 0.16 1.85 16 3 C -0.17 -2.23 9.20 71.98 0.66 -1.57 16 4 N -0.61 -8.74 2.83 -794.03 -2.25 -10.99 16 5 C 0.11 0.97 6.87 86.84 0.60 1.57 16 6 C -0.09 -1.07 3.42 -9.73 -0.03 -1.10 16 7 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 8 C 0.07 1.27 4.77 71.98 0.34 1.61 16 9 O -0.34 -9.02 9.42 -56.15 -0.53 -9.55 16 10 C 0.52 18.43 7.90 70.34 0.56 18.99 16 11 O -0.54 -21.56 16.12 19.95 0.32 -21.24 16 12 C -0.10 -4.15 5.87 -20.14 -0.12 -4.27 16 13 C -0.16 -5.61 9.62 22.71 0.22 -5.39 16 14 C -0.09 -3.16 10.01 22.18 0.22 -2.94 16 15 C -0.21 -9.35 7.17 22.77 0.16 -9.19 16 16 C 0.06 3.09 5.10 -21.32 -0.11 2.98 16 17 C -0.49 -26.89 9.57 23.47 0.22 -26.66 16 18 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 19 C 0.05 2.42 5.40 85.25 0.46 2.88 16 20 N -0.85 -45.58 13.93 21.82 0.30 -45.28 16 21 Si 0.96 40.64 24.52 68.60 1.68 42.32 16 22 H -0.25 -9.50 6.71 99.48 0.67 -8.84 16 23 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.25 -10.75 6.86 99.48 0.68 -10.07 16 25 C -0.16 -7.39 9.34 23.02 0.21 -7.18 16 26 C -0.15 -2.58 6.39 30.59 0.20 -2.38 16 27 C 0.51 10.74 7.41 87.90 0.65 11.39 16 28 O -0.57 -16.82 15.12 -3.02 -0.05 -16.87 16 29 H 0.04 0.79 6.81 -2.38 -0.02 0.77 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.12 0.67 8.07 -2.39 -0.02 0.65 16 33 H 0.04 0.82 6.77 -2.39 -0.02 0.81 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.09 0.62 7.89 -2.39 -0.02 0.60 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.37 7.93 -2.39 -0.02 1.36 16 40 H 0.15 4.06 7.59 -2.91 -0.02 4.03 16 41 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.11 4.62 4.72 -2.91 -0.01 4.61 16 43 H 0.30 14.20 8.30 -92.71 -0.77 13.43 16 44 H 0.10 4.91 7.64 -2.91 -0.02 4.89 16 45 H 0.10 1.82 7.75 -2.38 -0.02 1.81 16 46 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.18 378.01 5.47 -63.71 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.92 Total: 18.76 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 5.07 Total: -20.86 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.94 Total: -56.27 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.25 Total: -47.66 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.68 Total: 42.32 kcal Total: -69.18 5.47 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847756564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.139 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds