Wall clock time and date at job start Tue Mar 31 2020 16:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47632 * 2 1 4 4 N 1.46505 * 109.47278 * 119.99843 * 2 1 3 5 5 C 1.46769 * 124.34897 * 119.99602 * 4 2 1 6 6 C 1.54482 * 105.47228 * 197.03978 * 5 4 2 7 7 H 1.08994 * 110.96516 * 216.46427 * 6 5 4 8 8 C 1.52999 * 110.96601 * 92.74200 * 6 5 4 9 9 O 1.45202 * 109.46578 * 174.99729 * 8 6 5 10 10 C 1.34706 * 116.99710 * 179.97438 * 9 8 6 11 11 O 1.21469 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.47771 * 119.99824 * 179.97438 * 10 9 8 13 13 C 1.39969 * 120.03299 * 359.73333 * 12 10 9 14 14 C 1.38310 * 120.35182 * 179.74096 * 13 12 10 15 15 C 1.37760 * 120.42285 * 0.55422 * 14 13 12 16 16 C 1.40757 * 120.04807 * 359.70049 * 15 14 13 17 17 C 1.41433 * 120.17433 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00136 * 24.48249 * 17 16 15 19 19 C 1.39941 * 119.99512 * 204.48380 * 17 16 15 20 20 N 1.30822 * 120.00455 * 17.87900 * 19 17 16 21 21 Si 1.86804 * 119.99583 * 197.87763 * 19 17 16 22 22 H 1.48504 * 109.46885 * 90.00211 * 21 19 17 23 23 H 1.48497 * 109.47310 * 209.99731 * 21 19 17 24 24 H 1.48493 * 109.47363 * 330.00420 * 21 19 17 25 25 C 1.39055 * 120.02943 * 180.02562 * 12 10 9 26 26 C 1.54782 * 101.69334 * 334.39324 * 6 5 4 27 27 C 1.34413 * 124.34995 * 300.02429 * 4 2 1 28 28 O 1.21280 * 124.94424 * 359.53184 * 27 4 2 29 29 H 1.09007 * 109.47050 * 300.00367 * 1 2 3 30 30 H 1.08997 * 109.47340 * 59.99629 * 1 2 3 31 31 H 1.09004 * 109.47660 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47050 * 239.99633 * 2 1 3 33 33 H 1.09006 * 109.46971 * 300.00298 * 3 2 1 34 34 H 1.08993 * 109.47151 * 59.99720 * 3 2 1 35 35 H 1.08998 * 109.47587 * 180.02562 * 3 2 1 36 36 H 1.08995 * 110.24470 * 316.04096 * 5 4 2 37 37 H 1.08995 * 110.24292 * 77.95247 * 5 4 2 38 38 H 1.08998 * 109.47078 * 294.99606 * 8 6 5 39 39 H 1.08999 * 109.47318 * 55.00087 * 8 6 5 40 40 H 1.08002 * 119.82216 * 359.97438 * 13 12 10 41 41 H 1.08005 * 119.78941 * 180.25763 * 14 13 12 42 42 H 1.07996 * 119.97532 * 179.72120 * 15 14 13 43 43 H 0.96999 * 120.00539 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20392 * 0.02562 * 25 12 10 45 45 H 1.09000 * 110.61418 * 266.39970 * 26 6 5 46 46 H 1.08995 * 110.42799 * 143.71095 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 2.7604 -2.4957 2.5895 7 1 3.7134 -2.9217 2.9030 8 6 1.6474 -3.5434 2.6551 9 8 1.6543 -4.1756 3.9623 10 6 0.7288 -5.1285 4.1856 11 8 -0.0621 -5.4237 3.3121 12 6 0.6763 -5.8156 5.4928 13 6 1.5915 -5.4807 6.4975 14 6 1.5450 -6.1158 7.7253 15 6 0.6053 -7.0929 7.9700 16 6 -0.3200 -7.4471 6.9702 17 6 -1.2863 -8.4496 7.2188 18 1 -1.5916 -8.6660 8.2319 19 6 -1.8467 -9.1610 6.1520 20 7 -1.2545 -9.1651 4.9855 21 14 -3.4404 -10.1051 6.3937 22 1 -4.5918 -9.2200 6.0836 23 1 -3.4617 -11.2808 5.4869 24 1 -3.5348 -10.5647 7.8025 25 6 -0.2785 -6.7998 5.7238 26 6 2.4078 -1.2506 3.4387 27 6 1.7476 -0.3085 2.4562 28 8 1.0761 0.6543 2.7610 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 2.4968 -2.5970 0.4308 37 1 3.8978 -1.6166 0.9533 38 1 0.6841 -3.0610 2.4898 39 1 1.8127 -4.2978 1.8859 40 1 2.3356 -4.7196 6.3143 41 1 2.2530 -5.8473 8.4954 42 1 0.5784 -7.5873 8.9298 43 1 -1.6427 -9.6585 4.2461 44 1 -0.9834 -7.0652 4.9499 45 1 3.3101 -0.7998 3.8520 46 1 1.7143 -1.5178 4.2360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847756565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:34 Heat of formation + Delta-G solvation = -111.624104 kcal Electronic energy + Delta-G solvation = -27822.370985 eV Core-core repulsion = 23869.240167 eV Total energy + Delta-G solvation = -3953.130818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92244 -39.72726 -37.49255 -36.77436 -36.02559 -35.10703 -33.78329 -31.05516 -30.25061 -29.53933 -28.34099 -27.44859 -26.22952 -25.32907 -23.02305 -22.69415 -21.07580 -20.97595 -19.86779 -19.04046 -17.86918 -17.16707 -16.75272 -16.27927 -16.04830 -15.71939 -15.44396 -14.97266 -14.68031 -14.36389 -14.04106 -13.91093 -13.81597 -13.55304 -13.37769 -13.11761 -12.94460 -12.66145 -12.49063 -12.34442 -12.22610 -11.95484 -11.74758 -11.68599 -11.54150 -11.37793 -11.22768 -11.15441 -11.09965 -10.78770 -10.55316 -10.31310 -10.23158 -9.76376 -9.71506 -9.53171 -9.27718 -8.96318 -7.78334 -7.59471 -6.86478 -4.47242 1.93560 2.45368 2.70656 2.74871 3.04547 3.06407 3.07894 3.11132 3.55552 3.87620 4.10562 4.20056 4.44936 4.54007 4.55546 4.73448 4.77234 4.90507 5.09145 5.17723 5.23967 5.34519 5.36947 5.40442 5.46067 5.50567 5.51553 5.57802 5.60847 5.79189 5.85702 5.92460 6.01461 6.09838 6.36237 6.40505 6.59321 6.87217 6.90753 6.92267 6.94487 7.13510 7.27302 7.64324 7.71501 7.87451 8.03687 8.06735 8.40753 8.49541 8.73424 8.75417 10.08846 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002458 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.919582 B =11386.489399 C =12185.260142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 C -0.167 4.167 4 N -0.620 5.620 5 C 0.111 3.889 6 C -0.099 4.099 7 H 0.112 0.888 8 C 0.074 3.926 9 O -0.354 6.354 10 C 0.513 3.487 11 O -0.517 6.517 12 C -0.115 4.115 13 C -0.194 4.194 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.095 3.905 17 C -0.459 4.459 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.089 4.089 26 C -0.152 4.152 27 C 0.520 3.480 28 O -0.529 6.529 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.135 0.865 45 H 0.108 0.892 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 12.946 -10.017 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.356 5.356 5 C -0.013 4.013 6 C -0.118 4.118 7 H 0.130 0.870 8 C -0.001 4.001 9 O -0.271 6.271 10 C 0.360 3.640 11 O -0.407 6.407 12 C -0.116 4.116 13 C -0.213 4.213 14 C -0.122 4.122 15 C -0.221 4.221 16 C 0.092 3.908 17 C -0.488 4.488 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.411 5.411 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.109 4.109 26 C -0.192 4.192 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.153 0.847 45 H 0.127 0.873 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.984 13.313 -10.466 18.722 hybrid contribution -0.639 -0.598 -0.263 0.914 sum 7.345 12.716 -10.729 18.186 Atomic orbital electron populations 1.22200 0.94614 1.02668 1.03319 1.20936 0.94589 0.93059 0.86367 1.22178 1.01116 0.95852 1.03336 1.48492 1.51389 1.29396 1.06296 1.22085 0.95380 0.86573 0.97220 1.22168 1.00653 0.94334 0.94596 0.86967 1.22837 0.98675 0.94529 0.84052 1.86568 1.54810 1.50492 1.35257 1.21888 0.76924 0.76271 0.88909 1.90770 1.40229 1.63445 1.46226 1.18821 1.02030 1.00737 0.90053 1.20551 1.02110 1.04590 0.94082 1.20515 0.98552 0.97259 0.95871 1.21191 0.98291 1.02373 1.00248 1.17549 0.91115 0.91442 0.90652 1.19582 1.19120 1.15640 0.94476 0.89891 1.25969 0.98081 0.96024 0.94515 1.69772 1.35869 1.33009 1.02471 0.86251 0.81670 0.79009 0.79499 1.19128 1.20209 1.18509 1.21665 0.97354 0.92804 0.99058 1.22485 1.03391 0.94686 0.98623 1.20940 0.79627 0.84919 0.83743 1.90691 1.39434 1.28860 1.81509 0.90934 0.91474 0.92294 0.89478 0.91526 0.90939 0.92566 0.89915 0.90082 0.91510 0.90831 0.87827 0.88503 0.88329 0.90408 0.84689 0.87337 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.20 37.15 0.34 -1.28 16 2 C 0.15 1.30 3.47 -67.93 -0.24 1.06 16 3 C -0.17 -1.37 9.20 37.16 0.34 -1.03 16 4 N -0.62 -6.02 2.83 -164.84 -0.47 -6.48 16 5 C 0.11 0.81 6.85 -3.12 -0.02 0.79 16 6 C -0.10 -0.91 3.41 -88.90 -0.30 -1.22 16 7 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 8 C 0.07 0.98 4.76 37.16 0.18 1.16 16 9 O -0.35 -6.14 9.33 -40.51 -0.38 -6.52 16 10 C 0.51 11.15 7.90 34.63 0.27 11.43 16 11 O -0.52 -12.36 16.12 -19.24 -0.31 -12.67 16 12 C -0.12 -2.71 5.87 -105.05 -0.62 -3.33 16 13 C -0.19 -4.13 9.62 -38.91 -0.37 -4.51 16 14 C -0.10 -2.19 10.01 -39.73 -0.40 -2.58 16 15 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 16 C 0.09 2.46 5.57 -106.87 -0.60 1.86 16 17 C -0.46 -11.80 9.05 -37.73 -0.34 -12.14 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -20.36 10.96 55.55 0.61 -19.75 16 21 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.09 -2.34 8.24 -38.42 -0.32 -2.65 16 26 C -0.15 -1.59 6.39 -26.66 -0.17 -1.76 16 27 C 0.52 6.45 7.41 -10.86 -0.08 6.37 16 28 O -0.53 -8.43 15.12 5.56 0.08 -8.34 16 29 H 0.07 0.88 6.80 -51.92 -0.35 0.53 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.55 8.07 -51.92 -0.42 0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.10 1.95 7.59 -52.49 -0.40 1.55 16 41 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.14 3.78 5.74 -52.49 -0.30 3.48 16 45 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.11 1.35 7.83 -51.93 -0.41 0.94 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -30.76 383.34 -9.34 -40.10 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.84 Total: 5.63 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.79 Total: -11.17 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.14 Total: -26.23 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.60 Total: -27.53 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.76 -9.34 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847756565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.525 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds