Wall clock time and date at job start Tue Mar 31 2020 16:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47632 * 2 1 4 4 N 1.46505 * 109.47278 * 119.99843 * 2 1 3 5 5 C 1.46769 * 124.34897 * 119.99602 * 4 2 1 6 6 C 1.54482 * 105.47228 * 197.03978 * 5 4 2 7 7 H 1.08994 * 110.96516 * 216.46427 * 6 5 4 8 8 C 1.52999 * 110.96601 * 92.74200 * 6 5 4 9 9 O 1.45202 * 109.46578 * 174.99729 * 8 6 5 10 10 C 1.34706 * 116.99710 * 179.97438 * 9 8 6 11 11 O 1.21469 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.47771 * 119.99824 * 179.97438 * 10 9 8 13 13 C 1.39969 * 120.03299 * 359.73333 * 12 10 9 14 14 C 1.38310 * 120.35182 * 179.74096 * 13 12 10 15 15 C 1.37760 * 120.42285 * 0.55422 * 14 13 12 16 16 C 1.40757 * 120.04807 * 359.70049 * 15 14 13 17 17 C 1.41433 * 120.17433 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00136 * 24.48249 * 17 16 15 19 19 C 1.39941 * 119.99512 * 204.48380 * 17 16 15 20 20 N 1.30822 * 120.00455 * 17.87900 * 19 17 16 21 21 Si 1.86804 * 119.99583 * 197.87763 * 19 17 16 22 22 H 1.48504 * 109.46885 * 90.00211 * 21 19 17 23 23 H 1.48497 * 109.47310 * 209.99731 * 21 19 17 24 24 H 1.48493 * 109.47363 * 330.00420 * 21 19 17 25 25 C 1.39055 * 120.02943 * 180.02562 * 12 10 9 26 26 C 1.54782 * 101.69334 * 334.39324 * 6 5 4 27 27 C 1.34413 * 124.34995 * 300.02429 * 4 2 1 28 28 O 1.21280 * 124.94424 * 359.53184 * 27 4 2 29 29 H 1.09007 * 109.47050 * 300.00367 * 1 2 3 30 30 H 1.08997 * 109.47340 * 59.99629 * 1 2 3 31 31 H 1.09004 * 109.47660 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47050 * 239.99633 * 2 1 3 33 33 H 1.09006 * 109.46971 * 300.00298 * 3 2 1 34 34 H 1.08993 * 109.47151 * 59.99720 * 3 2 1 35 35 H 1.08998 * 109.47587 * 180.02562 * 3 2 1 36 36 H 1.08995 * 110.24470 * 316.04096 * 5 4 2 37 37 H 1.08995 * 110.24292 * 77.95247 * 5 4 2 38 38 H 1.08998 * 109.47078 * 294.99606 * 8 6 5 39 39 H 1.08999 * 109.47318 * 55.00087 * 8 6 5 40 40 H 1.08002 * 119.82216 * 359.97438 * 13 12 10 41 41 H 1.08005 * 119.78941 * 180.25763 * 14 13 12 42 42 H 1.07996 * 119.97532 * 179.72120 * 15 14 13 43 43 H 0.96999 * 120.00539 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20392 * 0.02562 * 25 12 10 45 45 H 1.09000 * 110.61418 * 266.39970 * 26 6 5 46 46 H 1.08995 * 110.42799 * 143.71095 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 2.7604 -2.4957 2.5895 7 1 3.7134 -2.9217 2.9030 8 6 1.6474 -3.5434 2.6551 9 8 1.6543 -4.1756 3.9623 10 6 0.7288 -5.1285 4.1856 11 8 -0.0621 -5.4237 3.3121 12 6 0.6763 -5.8156 5.4928 13 6 1.5915 -5.4807 6.4975 14 6 1.5450 -6.1158 7.7253 15 6 0.6053 -7.0929 7.9700 16 6 -0.3200 -7.4471 6.9702 17 6 -1.2863 -8.4496 7.2188 18 1 -1.5916 -8.6660 8.2319 19 6 -1.8467 -9.1610 6.1520 20 7 -1.2545 -9.1651 4.9855 21 14 -3.4404 -10.1051 6.3937 22 1 -4.5918 -9.2200 6.0836 23 1 -3.4617 -11.2808 5.4869 24 1 -3.5348 -10.5647 7.8025 25 6 -0.2785 -6.7998 5.7238 26 6 2.4078 -1.2506 3.4387 27 6 1.7476 -0.3085 2.4562 28 8 1.0761 0.6543 2.7610 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 2.4968 -2.5970 0.4308 37 1 3.8978 -1.6166 0.9533 38 1 0.6841 -3.0610 2.4898 39 1 1.8127 -4.2978 1.8859 40 1 2.3356 -4.7196 6.3143 41 1 2.2530 -5.8473 8.4954 42 1 0.5784 -7.5873 8.9298 43 1 -1.6427 -9.6585 4.2461 44 1 -0.9834 -7.0652 4.9499 45 1 3.3101 -0.7998 3.8520 46 1 1.7143 -1.5178 4.2360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847756565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:33 Heat of formation + Delta-G solvation = -127.586251 kcal Electronic energy + Delta-G solvation = -27823.063155 eV Core-core repulsion = 23869.240167 eV Total energy + Delta-G solvation = -3953.822989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86499 -41.24680 -39.20740 -37.94289 -37.27511 -36.07801 -35.60647 -32.39025 -31.61247 -31.33586 -29.21432 -28.16068 -27.48238 -26.95552 -24.63970 -23.45608 -22.84888 -21.88764 -21.52911 -19.93028 -19.61133 -18.31997 -17.89654 -17.73744 -17.43015 -17.04977 -16.59144 -16.39458 -16.33009 -15.34157 -15.14467 -15.09607 -15.03357 -14.68814 -14.58915 -14.45123 -14.33317 -13.78439 -13.65391 -13.52573 -13.39210 -13.05526 -12.99657 -12.84756 -12.76292 -12.57228 -12.55329 -12.25579 -12.21404 -12.16948 -12.04264 -11.95736 -11.63779 -11.53963 -11.27898 -11.10380 -10.64008 -9.73846 -9.61374 -9.44032 -8.69349 -6.39994 0.13391 0.96908 1.36977 1.46013 1.50536 1.50957 1.65918 1.80283 2.01900 2.18295 2.71896 3.32068 3.38272 3.54018 3.63204 3.76315 3.94565 4.07554 4.08432 4.19546 4.27062 4.35947 4.44170 4.51880 4.62366 4.64394 4.65416 4.67630 4.73445 4.82434 4.85214 4.87861 4.92670 5.03500 5.05990 5.14029 5.19616 5.27245 5.27798 5.29796 5.45288 5.67791 5.82269 5.89988 6.01426 6.12650 6.23604 6.53120 6.80869 6.86519 6.89086 7.15131 8.28175 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002458 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.919582 B =11386.489399 C =12185.260142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 C -0.160 4.160 4 N -0.617 5.617 5 C 0.112 3.888 6 C -0.086 4.086 7 H 0.142 0.858 8 C 0.067 3.933 9 O -0.342 6.342 10 C 0.516 3.484 11 O -0.549 6.549 12 C -0.129 4.129 13 C -0.177 4.177 14 C -0.100 4.100 15 C -0.203 4.203 16 C 0.064 3.936 17 C -0.494 4.494 18 H 0.087 0.913 19 C 0.030 3.970 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.250 1.250 25 C -0.125 4.125 26 C -0.150 4.150 27 C 0.507 3.493 28 O -0.576 6.576 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.288 0.712 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 13.439 -10.485 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 C -0.218 4.218 4 N -0.351 5.351 5 C -0.010 4.010 6 C -0.104 4.104 7 H 0.159 0.841 8 C -0.007 4.007 9 O -0.259 6.259 10 C 0.364 3.636 11 O -0.441 6.441 12 C -0.130 4.130 13 C -0.196 4.196 14 C -0.118 4.118 15 C -0.223 4.223 16 C 0.062 3.938 17 C -0.523 4.523 18 H 0.105 0.895 19 C -0.185 4.185 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.145 4.145 26 C -0.190 4.190 27 C 0.296 3.704 28 O -0.457 6.457 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.152 0.848 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.617 13.806 -10.944 20.569 hybrid contribution -1.302 -0.590 -0.142 1.437 sum 9.315 13.215 -11.086 19.604 Atomic orbital electron populations 1.22177 0.95903 1.01839 1.02655 1.21160 0.93653 0.93700 0.87018 1.22114 1.01690 0.95443 1.02586 1.48656 1.50878 1.29743 1.05814 1.22346 0.96982 0.85657 0.96010 1.22204 0.99890 0.92382 0.95970 0.84056 1.23245 0.99769 0.95468 0.82234 1.86524 1.52736 1.48996 1.37610 1.21665 0.77159 0.76698 0.88064 1.90749 1.41641 1.64636 1.47053 1.19090 1.01901 1.00373 0.91683 1.20988 1.01210 1.04130 0.93317 1.20985 0.98282 0.95773 0.96740 1.21510 0.97935 1.02706 1.00157 1.17911 0.92347 0.92104 0.91476 1.19857 1.20681 1.16727 0.95072 0.89534 1.26839 1.01003 0.96722 0.93922 1.69860 1.37537 1.34331 1.03394 0.85190 0.76964 0.77610 0.79930 1.19250 1.19361 1.17358 1.21472 0.98767 0.95201 0.99067 1.22497 1.03708 0.94984 0.97826 1.21350 0.79302 0.84659 0.85111 1.90665 1.41597 1.30990 1.82417 0.94337 0.89404 0.93134 0.86097 0.89733 0.94221 0.91455 0.88433 0.86298 0.93406 0.89906 0.84443 0.84027 0.86773 0.90173 0.87778 0.84758 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.20 71.98 0.66 -2.50 16 2 C 0.15 2.20 3.47 44.99 0.16 2.36 16 3 C -0.16 -2.39 9.20 71.98 0.66 -1.73 16 4 N -0.62 -10.75 2.83 -794.04 -2.25 -13.00 16 5 C 0.11 1.19 6.85 86.83 0.59 1.79 16 6 C -0.09 -1.32 3.41 -9.68 -0.03 -1.35 16 7 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 8 C 0.07 1.69 4.76 71.98 0.34 2.03 16 9 O -0.34 -11.47 9.33 -56.15 -0.52 -11.99 16 10 C 0.52 22.71 7.90 70.34 0.56 23.26 16 11 O -0.55 -27.22 16.12 19.94 0.32 -26.90 16 12 C -0.13 -6.14 5.87 -20.14 -0.12 -6.26 16 13 C -0.18 -7.17 9.62 22.71 0.22 -6.95 16 14 C -0.10 -3.94 10.01 22.17 0.22 -3.71 16 15 C -0.20 -9.29 9.78 22.77 0.22 -9.07 16 16 C 0.06 3.40 5.57 -21.32 -0.12 3.28 16 17 C -0.49 -26.30 9.05 23.47 0.21 -26.09 16 18 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 19 C 0.03 1.54 5.14 85.26 0.44 1.98 16 20 N -0.83 -44.86 10.96 21.83 0.24 -44.62 16 21 Si 0.98 38.84 29.60 68.60 2.03 40.87 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 25 C -0.13 -6.83 8.24 23.02 0.19 -6.64 16 26 C -0.15 -2.89 6.39 30.64 0.20 -2.70 16 27 C 0.51 12.38 7.41 87.90 0.65 13.03 16 28 O -0.58 -19.18 15.12 -3.03 -0.05 -19.22 16 29 H 0.04 0.99 6.80 -2.38 -0.02 0.97 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.12 1.06 8.07 -2.38 -0.02 1.04 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.04 0.87 6.77 -2.39 -0.02 0.85 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.84 7.88 -2.39 -0.02 0.82 16 37 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 39 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 40 H 0.14 4.61 7.59 -2.91 -0.02 4.59 16 41 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 44 H 0.10 6.26 5.74 -2.91 -0.02 6.24 16 45 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.09 2.11 7.83 -2.39 -0.02 2.09 16 Total: -1.00 -73.21 383.34 5.81 -67.40 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.98 Total: 26.73 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 5.05 Total: -19.26 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -2.01 Total: -57.62 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -0.25 Total: -58.11 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -73.21 5.81 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847756565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.186 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds