Wall clock time and date at job start Tue Mar 31 2020 16:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00437 * 2 1 4 4 N 1.46503 * 109.47455 * 124.48612 * 3 2 1 5 5 C 1.46504 * 119.99967 * 94.71378 * 4 3 2 6 6 C 1.50693 * 109.46867 * 84.25902 * 5 4 3 7 7 H 1.08003 * 120.00479 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99865 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47370 * 59.99965 * 10 8 6 12 12 H 1.48499 * 109.47519 * 299.99320 * 10 8 6 13 13 H 1.48501 * 109.47125 * 179.97438 * 10 8 6 14 14 C 1.34769 * 119.99816 * 274.72073 * 4 3 2 15 15 O 1.21286 * 120.00563 * 4.83795 * 14 4 3 16 16 C 1.50700 * 120.00230 * 184.84217 * 14 4 3 17 17 H 1.09004 * 109.55687 * 313.88259 * 16 14 4 18 18 C 1.53262 * 109.55970 * 74.09340 * 16 14 4 19 19 C 1.53259 * 108.84571 * 174.36979 * 18 16 14 20 20 O 1.43091 * 108.94170 * 305.47186 * 19 18 16 21 21 C 1.42977 * 113.76807 * 57.97262 * 20 19 18 22 22 H 1.09006 * 109.46649 * 61.20554 * 21 20 19 23 23 C 1.50693 * 109.47311 * 181.20368 * 21 20 19 24 24 C 1.38235 * 120.00144 * 119.72549 * 23 21 20 25 25 C 1.38232 * 120.00308 * 179.79027 * 24 23 21 26 26 C 1.38236 * 119.99974 * 0.46175 * 25 24 23 27 27 C 1.38238 * 120.00085 * 359.77334 * 26 25 24 28 28 C 1.38236 * 119.99656 * 0.02562 * 27 26 25 29 29 O 1.42977 * 109.55819 * 301.26421 * 21 20 19 30 30 H 1.07997 * 120.00290 * 185.02901 * 1 2 3 31 31 H 1.08004 * 119.99494 * 5.02250 * 1 2 3 32 32 H 1.08001 * 119.99520 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47285 * 4.48543 * 3 2 1 34 34 H 1.09000 * 109.47145 * 244.48664 * 3 2 1 35 35 H 1.09001 * 109.46834 * 324.25712 * 5 4 3 36 36 H 1.08996 * 109.46547 * 204.26010 * 5 4 3 37 37 H 0.97003 * 119.99753 * 0.02562 * 9 8 6 38 38 H 1.08999 * 109.57303 * 294.17618 * 18 16 14 39 39 H 1.08993 * 109.57525 * 54.43223 * 18 16 14 40 40 H 1.08994 * 109.56308 * 65.31497 * 19 18 16 41 41 H 1.09001 * 109.55906 * 185.63921 * 19 18 16 42 42 H 1.08005 * 119.99709 * 0.02562 * 24 23 21 43 43 H 1.08000 * 120.00236 * 180.25252 * 25 24 23 44 44 H 1.08002 * 120.00302 * 179.78975 * 26 25 24 45 45 H 1.07997 * 120.00721 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.99985 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9850 1.3369 1.1385 5 6 4.3805 0.9266 0.9631 6 6 5.1848 2.0905 0.4443 7 1 4.7046 3.0408 0.2628 8 6 6.5337 1.9421 0.2002 9 7 7.1184 0.7849 0.4206 10 14 7.5305 3.3847 -0.4437 11 1 7.4630 4.5059 0.5277 12 1 6.9764 3.8262 -1.7487 13 1 8.9450 2.9689 -0.6213 14 6 2.5490 1.7435 2.3471 15 8 1.3752 1.9991 2.5139 16 6 3.5199 1.8808 3.4915 17 1 4.1598 0.9994 3.5348 18 6 4.3820 3.1311 3.2857 19 6 5.2635 3.3337 4.5230 20 8 4.4303 3.3723 5.6856 21 6 3.6346 2.1979 5.8636 22 1 4.2862 1.3321 5.9819 23 6 2.7775 2.3533 7.0933 24 6 1.4001 2.3086 6.9859 25 6 0.6139 2.4468 8.1145 26 6 1.2050 2.6394 9.3492 27 6 2.5824 2.6891 9.4560 28 6 3.3686 2.5467 8.3279 29 8 2.7975 2.0091 4.7199 30 1 -0.5400 -0.9317 0.0820 31 1 -0.5399 0.9318 -0.0819 32 1 1.8499 -0.9354 -0.0004 33 1 1.3581 2.1320 0.0804 34 1 2.6286 1.3983 -0.9275 35 1 4.4303 0.1038 0.2500 36 1 4.7869 0.6023 1.9211 37 1 6.6006 0.0357 0.7546 38 1 5.0120 2.9996 2.4061 39 1 3.7384 3.9998 3.1474 40 1 5.9696 2.5077 4.6073 41 1 5.8082 4.2736 4.4331 42 1 0.9381 2.1618 6.0207 43 1 -0.4621 2.4078 8.0312 44 1 0.5908 2.7509 10.2305 45 1 3.0442 2.8399 10.4205 46 1 4.4446 2.5858 8.4112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848119933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:56 Heat of formation + Delta-G solvation = -76.560557 kcal Electronic energy + Delta-G solvation = -29180.771815 eV Core-core repulsion = 25229.161467 eV Total energy + Delta-G solvation = -3951.610348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36879 -39.23664 -38.32834 -35.80719 -35.22918 -34.02861 -32.85344 -32.25096 -30.89697 -30.58008 -27.42899 -26.97523 -25.50738 -24.90366 -23.14018 -22.49673 -21.75808 -20.93214 -19.78375 -18.91735 -17.50741 -17.25991 -16.86471 -16.41667 -16.01226 -15.81110 -15.45870 -15.12181 -14.71472 -14.46733 -14.19476 -14.03744 -13.92830 -13.81396 -13.38777 -13.12659 -13.05200 -12.70640 -12.59332 -12.50076 -12.05015 -11.60245 -11.57651 -11.44645 -11.05622 -11.03257 -10.99086 -10.87178 -10.75301 -10.60705 -10.27256 -10.00555 -9.56968 -9.41184 -9.27897 -8.90720 -8.87285 -8.81792 -8.62900 -7.85949 -6.67154 -4.43912 1.25056 1.42159 2.46109 3.14991 3.26448 3.28008 3.30886 3.47255 3.58553 4.01174 4.18637 4.29633 4.85318 4.92134 4.97847 5.00995 5.02692 5.06954 5.12876 5.18453 5.26482 5.28055 5.45443 5.50635 5.59895 5.60508 5.67386 5.84342 5.90879 5.98442 6.06316 6.08346 6.22763 6.22961 6.34522 6.41791 6.50607 6.58217 6.63231 6.69050 6.85156 6.97184 7.02094 7.09493 7.22310 7.35268 7.67684 7.95347 8.24064 8.48740 8.80035 9.25759 10.67944 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004059 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.544787 B = 6896.731900 C = 8901.877334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 C 0.150 3.850 4 N -0.585 5.585 5 C 0.223 3.777 6 C -0.619 4.619 7 H 0.061 0.939 8 C 0.028 3.972 9 N -0.897 5.897 10 Si 1.064 2.936 11 H -0.284 1.284 12 H -0.285 1.285 13 H -0.280 1.280 14 C 0.527 3.473 15 O -0.544 6.544 16 C 0.083 3.917 17 H 0.082 0.918 18 C -0.196 4.196 19 C 0.061 3.939 20 O -0.390 6.390 21 C 0.293 3.707 22 H 0.064 0.936 23 C -0.080 4.080 24 C -0.080 4.080 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.092 4.092 29 O -0.369 6.369 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 1.060 10.685 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C 0.028 3.972 4 N -0.317 5.317 5 C 0.102 3.898 6 C -0.657 4.657 7 H 0.079 0.921 8 C -0.179 4.179 9 N -0.532 5.532 10 Si 0.891 3.109 11 H -0.210 1.210 12 H -0.212 1.212 13 H -0.205 1.205 14 C 0.313 3.687 15 O -0.422 6.422 16 C 0.023 3.977 17 H 0.100 0.900 18 C -0.234 4.234 19 C -0.015 4.015 20 O -0.311 6.311 21 C 0.197 3.803 22 H 0.081 0.919 23 C -0.080 4.080 24 C -0.098 4.098 25 C -0.146 4.146 26 C -0.134 4.134 27 C -0.147 4.147 28 C -0.110 4.110 29 O -0.290 6.290 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.532 1.790 10.439 11.949 hybrid contribution -1.116 -0.782 0.137 1.370 sum -6.648 1.008 10.576 12.532 Atomic orbital electron populations 1.23723 0.95816 1.01453 1.00866 1.23344 0.96204 0.99165 0.99589 1.20350 0.92317 0.94809 0.89764 1.47882 1.12334 1.63969 1.07490 1.19615 0.76376 0.96539 0.97224 1.22270 0.96014 0.98214 1.49249 0.92122 1.25826 0.95557 1.01775 0.94722 1.70842 1.39725 1.01887 1.40726 0.83591 0.76343 0.74251 0.76723 1.21016 1.21165 1.20540 1.19821 0.88079 0.77228 0.83546 1.90625 1.17541 1.50815 1.83259 1.21908 0.92513 0.99357 0.83966 0.90036 1.23111 1.00542 0.97203 1.02500 1.22727 0.91906 1.03133 0.83692 1.88107 1.56613 1.40983 1.45412 1.21691 0.86157 0.87539 0.84883 0.91903 1.19297 0.93820 1.02580 0.92316 1.21179 0.92836 0.96214 0.99573 1.21180 0.99964 1.00899 0.92538 1.21193 0.94968 0.99629 0.97572 1.21051 0.93863 1.01605 0.98214 1.20880 1.00197 0.98420 0.91538 1.88079 1.33790 1.92556 1.14536 0.88920 0.88640 0.87715 0.90720 0.89257 0.95426 0.95449 0.92000 0.84117 0.90646 0.92439 0.87922 0.84386 0.85881 0.86166 0.85921 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 14.31 29.02 0.42 -2.27 16 2 C -0.16 -2.70 9.81 -36.03 -0.35 -3.06 16 3 C 0.15 2.76 5.78 -5.19 -0.03 2.73 16 4 N -0.59 -12.01 2.45 -176.44 -0.43 -12.44 16 5 C 0.22 4.87 4.06 -5.19 -0.02 4.85 16 6 C -0.62 -14.65 6.63 -34.44 -0.23 -14.88 16 7 H 0.06 1.47 7.77 -52.48 -0.41 1.07 16 8 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 9 N -0.90 -23.57 13.65 55.43 0.76 -22.81 16 10 Si 1.06 22.22 29.90 -169.99 -5.08 17.13 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.53 11.26 6.94 -10.99 -0.08 11.19 16 15 O -0.54 -12.82 16.27 -13.91 -0.23 -13.04 16 16 C 0.08 1.61 2.37 -27.75 -0.07 1.54 16 17 H 0.08 1.54 6.49 -51.93 -0.34 1.21 16 18 C -0.20 -3.66 5.51 -26.46 -0.15 -3.80 16 19 C 0.06 0.99 6.96 37.29 0.26 1.25 16 20 O -0.39 -6.64 10.41 -59.02 -0.61 -7.25 16 21 C 0.29 4.85 3.53 36.00 0.13 4.98 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 C -0.08 -1.21 5.56 -104.63 -0.58 -1.80 16 24 C -0.08 -1.20 9.38 -39.58 -0.37 -1.57 16 25 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 28 C -0.09 -1.18 9.61 -39.58 -0.38 -1.56 16 29 O -0.37 -7.12 8.24 -66.13 -0.55 -7.66 16 30 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.10 1.39 7.86 -52.48 -0.41 0.98 16 32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.07 1.39 7.30 -51.93 -0.38 1.01 16 34 H 0.09 1.60 8.04 -51.93 -0.42 1.18 16 35 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 36 H 0.03 0.61 5.77 -51.93 -0.30 0.31 16 37 H 0.27 6.99 7.22 -40.82 -0.29 6.70 16 38 H 0.14 2.88 4.63 -51.93 -0.24 2.64 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.14 2.29 7.01 -52.48 -0.37 1.92 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -28.78 379.27 -9.77 -38.55 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.59 Total: 9.05 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.74 Total: -7.24 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.32 Total: -35.25 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.39 Total: -27.96 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.08 Total: 17.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.78 -9.77 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848119933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.012 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds