Wall clock time and date at job start Tue Mar 31 2020 16:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00437 * 2 1 4 4 N 1.46503 * 109.47455 * 124.48612 * 3 2 1 5 5 C 1.46504 * 119.99967 * 94.71378 * 4 3 2 6 6 C 1.50693 * 109.46867 * 84.25902 * 5 4 3 7 7 H 1.08003 * 120.00479 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99865 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47370 * 59.99965 * 10 8 6 12 12 H 1.48499 * 109.47519 * 299.99320 * 10 8 6 13 13 H 1.48501 * 109.47125 * 179.97438 * 10 8 6 14 14 C 1.34769 * 119.99816 * 274.72073 * 4 3 2 15 15 O 1.21286 * 120.00563 * 4.83795 * 14 4 3 16 16 C 1.50700 * 120.00230 * 184.84217 * 14 4 3 17 17 H 1.09004 * 109.55687 * 313.88259 * 16 14 4 18 18 C 1.53262 * 109.55970 * 74.09340 * 16 14 4 19 19 C 1.53259 * 108.84571 * 174.36979 * 18 16 14 20 20 O 1.43091 * 108.94170 * 305.47186 * 19 18 16 21 21 C 1.42977 * 113.76807 * 57.97262 * 20 19 18 22 22 H 1.09006 * 109.46649 * 61.20554 * 21 20 19 23 23 C 1.50693 * 109.47311 * 181.20368 * 21 20 19 24 24 C 1.38235 * 120.00144 * 119.72549 * 23 21 20 25 25 C 1.38232 * 120.00308 * 179.79027 * 24 23 21 26 26 C 1.38236 * 119.99974 * 0.46175 * 25 24 23 27 27 C 1.38238 * 120.00085 * 359.77334 * 26 25 24 28 28 C 1.38236 * 119.99656 * 0.02562 * 27 26 25 29 29 O 1.42977 * 109.55819 * 301.26421 * 21 20 19 30 30 H 1.07997 * 120.00290 * 185.02901 * 1 2 3 31 31 H 1.08004 * 119.99494 * 5.02250 * 1 2 3 32 32 H 1.08001 * 119.99520 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47285 * 4.48543 * 3 2 1 34 34 H 1.09000 * 109.47145 * 244.48664 * 3 2 1 35 35 H 1.09001 * 109.46834 * 324.25712 * 5 4 3 36 36 H 1.08996 * 109.46547 * 204.26010 * 5 4 3 37 37 H 0.97003 * 119.99753 * 0.02562 * 9 8 6 38 38 H 1.08999 * 109.57303 * 294.17618 * 18 16 14 39 39 H 1.08993 * 109.57525 * 54.43223 * 18 16 14 40 40 H 1.08994 * 109.56308 * 65.31497 * 19 18 16 41 41 H 1.09001 * 109.55906 * 185.63921 * 19 18 16 42 42 H 1.08005 * 119.99709 * 0.02562 * 24 23 21 43 43 H 1.08000 * 120.00236 * 180.25252 * 25 24 23 44 44 H 1.08002 * 120.00302 * 179.78975 * 26 25 24 45 45 H 1.07997 * 120.00721 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.99985 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9850 1.3369 1.1385 5 6 4.3805 0.9266 0.9631 6 6 5.1848 2.0905 0.4443 7 1 4.7046 3.0408 0.2628 8 6 6.5337 1.9421 0.2002 9 7 7.1184 0.7849 0.4206 10 14 7.5305 3.3847 -0.4437 11 1 7.4630 4.5059 0.5277 12 1 6.9764 3.8262 -1.7487 13 1 8.9450 2.9689 -0.6213 14 6 2.5490 1.7435 2.3471 15 8 1.3752 1.9991 2.5139 16 6 3.5199 1.8808 3.4915 17 1 4.1598 0.9994 3.5348 18 6 4.3820 3.1311 3.2857 19 6 5.2635 3.3337 4.5230 20 8 4.4303 3.3723 5.6856 21 6 3.6346 2.1979 5.8636 22 1 4.2862 1.3321 5.9819 23 6 2.7775 2.3533 7.0933 24 6 1.4001 2.3086 6.9859 25 6 0.6139 2.4468 8.1145 26 6 1.2050 2.6394 9.3492 27 6 2.5824 2.6891 9.4560 28 6 3.3686 2.5467 8.3279 29 8 2.7975 2.0091 4.7199 30 1 -0.5400 -0.9317 0.0820 31 1 -0.5399 0.9318 -0.0819 32 1 1.8499 -0.9354 -0.0004 33 1 1.3581 2.1320 0.0804 34 1 2.6286 1.3983 -0.9275 35 1 4.4303 0.1038 0.2500 36 1 4.7869 0.6023 1.9211 37 1 6.6006 0.0357 0.7546 38 1 5.0120 2.9996 2.4061 39 1 3.7384 3.9998 3.1474 40 1 5.9696 2.5077 4.6073 41 1 5.8082 4.2736 4.4331 42 1 0.9381 2.1618 6.0207 43 1 -0.4621 2.4078 8.0312 44 1 0.5908 2.7509 10.2305 45 1 3.0442 2.8399 10.4205 46 1 4.4446 2.5858 8.4112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848119933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:55 Heat of formation + Delta-G solvation = -90.178343 kcal Electronic energy + Delta-G solvation = -29181.362327 eV Core-core repulsion = 25229.161467 eV Total energy + Delta-G solvation = -3952.200860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82535 -40.59932 -39.54252 -37.41564 -36.75356 -35.58260 -34.39000 -33.72775 -31.88726 -31.72626 -29.01213 -28.67709 -26.71219 -26.39814 -24.99242 -23.48250 -23.02490 -22.13855 -21.16056 -20.51809 -19.03882 -18.78651 -18.31695 -17.86563 -17.41656 -17.14229 -16.87670 -16.32869 -16.21561 -15.68708 -15.61806 -15.50977 -15.35592 -15.25673 -14.60700 -14.39370 -14.27920 -14.22103 -14.06648 -13.79163 -13.68252 -13.35244 -12.94703 -12.69074 -12.64178 -12.41398 -12.34658 -12.26162 -12.01260 -11.92820 -11.90539 -11.47463 -11.22223 -10.98011 -10.74701 -10.55442 -10.29095 -9.86290 -9.81285 -9.60777 -8.63044 -6.40600 0.27054 0.46203 1.13398 1.46182 1.60401 1.62635 1.81704 1.83599 2.45599 2.54723 2.69377 2.93326 3.13039 3.38942 3.61577 3.67577 3.72439 3.81249 3.93741 4.04981 4.08505 4.14375 4.17868 4.23260 4.31710 4.41352 4.57705 4.58142 4.61452 4.67498 4.69759 4.78835 4.83459 4.94740 4.96820 5.06915 5.12524 5.41945 5.50093 5.54587 5.57930 5.58458 5.72997 5.77921 5.80795 5.97585 6.04780 6.08342 6.41727 6.54846 7.09064 7.35073 8.72078 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004059 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.544787 B = 6896.731900 C = 8901.877334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.187 4.187 3 C 0.147 3.853 4 N -0.584 5.584 5 C 0.234 3.766 6 C -0.613 4.613 7 H 0.053 0.947 8 C -0.008 4.008 9 N -0.923 5.923 10 Si 1.101 2.899 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.286 1.286 14 C 0.521 3.479 15 O -0.571 6.571 16 C 0.085 3.915 17 H 0.085 0.915 18 C -0.187 4.187 19 C 0.063 3.937 20 O -0.395 6.395 21 C 0.286 3.714 22 H 0.075 0.925 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.123 4.123 28 C -0.099 4.099 29 O -0.385 6.385 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.019 0.981 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 1.692 12.626 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.206 4.206 3 C 0.025 3.975 4 N -0.315 5.315 5 C 0.113 3.887 6 C -0.651 4.651 7 H 0.071 0.929 8 C -0.210 4.210 9 N -0.559 5.559 10 Si 0.924 3.076 11 H -0.191 1.191 12 H -0.203 1.203 13 H -0.212 1.212 14 C 0.308 3.692 15 O -0.451 6.451 16 C 0.024 3.976 17 H 0.102 0.898 18 C -0.225 4.225 19 C -0.012 4.012 20 O -0.316 6.316 21 C 0.192 3.808 22 H 0.092 0.908 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.126 4.126 27 C -0.141 4.141 28 C -0.117 4.117 29 O -0.306 6.306 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.174 0.826 45 H 0.175 0.825 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.712 2.420 12.375 13.843 hybrid contribution -1.186 -0.991 -0.416 1.601 sum -6.899 1.429 11.959 13.880 Atomic orbital electron populations 1.23969 0.95239 1.02767 0.97854 1.23225 0.96828 0.98167 1.02341 1.20453 0.92076 0.95987 0.88953 1.47931 1.12126 1.63409 1.07986 1.19389 0.76924 0.95729 0.96659 1.22351 0.96130 0.98169 1.48468 0.92921 1.26881 0.96762 1.02863 0.94482 1.70938 1.39906 1.02437 1.42576 0.83097 0.74843 0.72585 0.77061 1.19112 1.20286 1.21167 1.20202 0.88097 0.76732 0.84141 1.90594 1.18630 1.52151 1.83739 1.21839 0.92086 0.99813 0.83830 0.89791 1.22974 1.00166 0.96163 1.03224 1.22807 0.91420 1.04737 0.82274 1.88102 1.56703 1.41436 1.45334 1.22000 0.86465 0.87777 0.84579 0.90781 1.19371 0.93785 1.04727 0.92611 1.21085 0.93306 0.98591 0.99488 1.21428 1.00801 1.00290 0.92389 1.21621 0.95437 0.97645 0.97946 1.21488 0.93977 0.99668 0.98922 1.21100 1.01157 0.98281 0.91155 1.88088 1.34816 1.92702 1.14987 0.86381 0.88423 0.87400 0.91215 0.89284 0.96294 0.95660 0.92875 0.85741 0.92020 0.91343 0.85826 0.87282 0.84120 0.82625 0.82513 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 14.31 67.78 0.97 -3.62 16 2 C -0.19 -6.14 9.81 25.65 0.25 -5.89 16 3 C 0.15 5.52 5.78 85.63 0.50 6.02 16 4 N -0.58 -24.58 2.45 -830.52 -2.04 -26.62 16 5 C 0.23 10.46 4.06 85.63 0.35 10.81 16 6 C -0.61 -29.28 6.63 25.60 0.17 -29.11 16 7 H 0.05 2.58 7.77 -2.91 -0.02 2.56 16 8 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 9 N -0.92 -48.82 13.65 21.45 0.29 -48.52 16 10 Si 1.10 44.21 29.90 68.60 2.05 46.26 16 11 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 12 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 14 C 0.52 22.96 6.94 87.66 0.61 23.57 16 15 O -0.57 -27.73 16.27 15.56 0.25 -27.48 16 16 C 0.08 3.39 2.37 29.94 0.07 3.46 16 17 H 0.08 3.27 6.49 -2.38 -0.02 3.26 16 18 C -0.19 -7.10 5.51 30.77 0.17 -6.93 16 19 C 0.06 2.01 6.96 72.07 0.50 2.51 16 20 O -0.39 -13.27 10.41 -126.23 -1.31 -14.58 16 21 C 0.29 9.59 3.53 71.23 0.25 9.84 16 22 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 23 C -0.10 -3.17 5.56 -19.87 -0.11 -3.28 16 24 C -0.11 -3.25 9.38 22.27 0.21 -3.04 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 27 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 28 C -0.10 -2.36 9.61 22.27 0.21 -2.15 16 29 O -0.39 -15.36 8.24 -119.44 -0.98 -16.35 16 30 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.10 2.75 7.86 -2.91 -0.02 2.72 16 32 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.07 2.65 7.30 -2.39 -0.02 2.64 16 34 H 0.09 3.27 8.04 -2.39 -0.02 3.25 16 35 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 36 H 0.03 1.16 5.77 -2.39 -0.01 1.14 16 37 H 0.26 13.82 7.22 -92.71 -0.67 13.15 16 38 H 0.12 5.15 4.63 -2.39 -0.01 5.14 16 39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.11 3.88 7.01 -2.91 -0.02 3.86 16 43 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -62.71 379.27 4.61 -58.10 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 1.07 Total: 33.62 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.28 Total: -4.43 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.74 Total: -75.14 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -2.05 Total: -58.41 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.05 Total: 46.26 kcal Total: -62.71 4.61 -58.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848119933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.083 kcal (2) G-P(sol) polarization free energy of solvation -62.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds