Wall clock time and date at job start Tue Mar 31 2020 17:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.66333 * 2 1 4 4 C 1.54703 * 110.74114 * 236.80211 * 2 1 3 5 5 C 1.51680 * 101.87980 * 216.24367 * 4 2 1 6 6 C 1.37282 * 132.07134 * 195.74889 * 5 4 2 7 7 C 1.39870 * 119.85772 * 179.57808 * 6 5 4 8 8 C 1.47469 * 120.27296 * 179.97438 * 7 6 5 9 9 O 1.21500 * 119.99825 * 0.02562 * 8 7 6 10 10 O 1.34746 * 119.99730 * 180.02562 * 8 7 6 11 11 C 1.45202 * 116.99722 * 179.97438 * 10 8 7 12 12 C 1.53038 * 109.45638 * 270.06345 * 11 10 8 13 13 C 1.53201 * 109.31193 * 178.61388 * 12 11 10 14 14 N 1.46927 * 108.77226 * 54.63527 * 13 12 11 15 15 C 1.36933 * 120.63211 * 126.37114 * 14 13 12 16 16 H 1.08004 * 120.00351 * 207.98337 * 15 14 13 17 17 C 1.38818 * 120.00148 * 27.97705 * 15 14 13 18 18 N 1.31622 * 119.99596 * 17.50610 * 17 15 14 19 19 Si 1.86794 * 120.00297 * 197.50377 * 17 15 14 20 20 H 1.48494 * 109.47168 * 94.07203 * 19 17 15 21 21 H 1.48507 * 109.46971 * 214.06705 * 19 17 15 22 22 H 1.48493 * 109.47265 * 334.06959 * 19 17 15 23 23 C 1.46928 * 118.73990 * 306.39213 * 14 13 12 24 24 C 1.53042 * 109.46069 * 149.99800 * 11 10 8 25 25 C 1.39809 * 119.45207 * 0.02562 * 7 6 5 26 26 C 1.37449 * 120.20218 * 0.17288 * 25 7 6 27 27 C 1.39203 * 106.98555 * 15.71989 * 5 4 2 28 28 O 1.35988 * 111.18878 * 0.62599 * 27 5 4 29 29 H 1.08998 * 109.47342 * 183.19573 * 1 2 3 30 30 H 1.08994 * 109.47409 * 303.19945 * 1 2 3 31 31 H 1.09003 * 109.46599 * 63.19698 * 1 2 3 32 32 H 1.08998 * 110.95307 * 334.39060 * 4 2 1 33 33 H 1.09002 * 110.94863 * 98.10204 * 4 2 1 34 34 H 1.07995 * 120.07141 * 359.62465 * 6 5 4 35 35 H 1.09000 * 109.46081 * 30.01879 * 11 10 8 36 36 H 1.08998 * 109.50047 * 298.56410 * 12 11 10 37 37 H 1.08996 * 109.50259 * 58.66733 * 12 11 10 38 38 H 1.08996 * 109.58516 * 294.84920 * 13 12 11 39 39 H 1.08994 * 109.58439 * 174.41866 * 13 12 11 40 40 H 0.96995 * 120.00204 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58525 * 293.81994 * 23 14 13 42 42 H 1.08998 * 109.58919 * 173.39933 * 23 14 13 43 43 H 1.09000 * 109.49381 * 301.33112 * 24 11 10 44 44 H 1.08995 * 109.49967 * 61.39403 * 24 11 10 45 45 H 1.07998 * 119.90004 * 180.15898 * 25 7 6 46 46 H 1.07997 * 119.77961 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0779 -0.7921 -1.2106 5 6 3.3080 -1.4542 -0.6197 6 6 4.3945 -2.0605 -1.1998 7 6 5.4086 -2.5899 -0.3949 8 6 6.5795 -3.2437 -1.0083 9 8 6.6665 -3.3236 -2.2175 10 8 7.5530 -3.7522 -0.2276 11 6 8.6755 -4.3819 -0.8998 12 6 8.3791 -5.8695 -1.1024 13 6 9.5504 -6.5233 -1.8425 14 7 10.7894 -6.2502 -1.1016 15 6 11.6160 -7.2742 -0.7230 16 1 12.2378 -7.1703 0.1540 17 6 11.6549 -8.4459 -1.4665 18 7 11.1841 -8.4613 -2.6955 19 14 12.3755 -10.0005 -0.7227 20 1 11.2868 -10.8127 -0.1225 21 1 13.0536 -10.7884 -1.7833 22 1 13.3588 -9.6365 0.3288 23 6 11.1244 -4.8577 -0.7740 24 6 9.9356 -4.2227 -0.0459 25 6 5.3023 -2.4952 0.9959 26 6 4.2081 -1.8897 1.5661 27 6 3.1932 -1.3636 0.7646 28 8 2.0389 -0.7399 1.1223 29 1 -0.3634 -1.0260 0.0573 30 1 -0.3634 0.5627 0.8599 31 1 -0.3632 0.4634 -0.9173 32 1 1.3575 -1.5379 -1.5468 33 1 2.3501 -0.1206 -2.0249 34 1 4.4665 -2.1279 -2.2752 35 1 8.8310 -3.9075 -1.8688 36 1 8.2480 -6.3498 -0.1328 37 1 7.4686 -5.9823 -1.6909 38 1 9.6260 -6.1069 -2.8470 39 1 9.3899 -7.5997 -1.9020 40 1 11.2115 -9.2799 -3.2151 41 1 11.3285 -4.3055 -1.6914 42 1 12.0025 -4.8352 -0.1286 43 1 10.1328 -3.1632 0.1175 44 1 9.7895 -4.7178 0.9140 45 1 6.0823 -2.8992 1.6242 46 1 4.1332 -1.8198 2.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:52 Heat of formation + Delta-G solvation = -75.501552 kcal Electronic energy + Delta-G solvation = -27719.734907 eV Core-core repulsion = 23768.170480 eV Total energy + Delta-G solvation = -3951.564427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60813 -40.24489 -37.98609 -37.09745 -35.74657 -33.64937 -32.73084 -31.63544 -30.73324 -30.19241 -29.66263 -27.17181 -25.39420 -24.16361 -22.27974 -22.23975 -22.16678 -22.04535 -20.50110 -19.31853 -18.03304 -17.75113 -17.08121 -16.82986 -16.47343 -15.74796 -15.52999 -14.91539 -14.56364 -14.48467 -14.04922 -13.81487 -13.62012 -13.56530 -13.36157 -13.30514 -13.00115 -12.96884 -12.73212 -12.58586 -12.48185 -12.42531 -11.74017 -11.52772 -11.32625 -11.17140 -11.15560 -11.05404 -10.75534 -10.66976 -10.34728 -10.31865 -10.19183 -9.90610 -9.66736 -9.39922 -9.29502 -8.55168 -8.48136 -6.73061 -5.80932 -3.23825 0.51644 0.98976 2.49015 2.74043 2.88233 3.38072 3.44991 3.46366 3.51293 3.96871 4.04788 4.39567 4.48312 4.48854 4.65177 4.69287 4.81498 4.95867 5.06013 5.12583 5.18786 5.26137 5.34918 5.37740 5.41427 5.44187 5.53197 5.56183 5.65874 5.73500 5.82206 5.95802 6.02325 6.05813 6.16909 6.21614 6.31527 6.47174 6.53319 6.60481 6.70387 6.74605 6.87236 6.94998 7.31729 7.61500 7.78456 7.98949 8.42193 9.17972 9.81043 10.37544 11.28058 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.002078 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.845975 B =13474.500341 C =13578.280309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.090 0.910 4 C -0.104 4.104 5 C -0.192 4.192 6 C -0.005 4.005 7 C -0.150 4.150 8 C 0.508 3.492 9 O -0.508 6.508 10 O -0.354 6.354 11 C 0.099 3.901 12 C -0.154 4.154 13 C 0.175 3.825 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.148 3.852 24 C -0.128 4.128 25 C -0.024 4.024 26 C -0.153 4.153 27 C 0.139 3.861 28 O -0.298 6.298 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.093 0.907 40 H 0.255 0.745 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.150 0.850 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 18.125 6.178 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.108 0.892 4 C -0.141 4.141 5 C -0.193 4.193 6 C -0.023 4.023 7 C -0.152 4.152 8 C 0.353 3.647 9 O -0.398 6.398 10 O -0.271 6.271 11 C 0.046 3.954 12 C -0.193 4.193 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.021 3.979 24 C -0.167 4.167 25 C -0.042 4.042 26 C -0.171 4.171 27 C 0.093 3.907 28 O -0.212 6.212 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.168 0.832 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.113 17.941 5.907 27.591 hybrid contribution 0.318 -0.850 0.012 0.908 sum -19.794 17.090 5.918 26.813 Atomic orbital electron populations 1.21898 0.91830 1.03712 1.03309 1.23456 0.95975 0.95481 0.83121 0.89198 1.21879 0.94372 0.99418 0.98427 1.20613 0.98121 1.06716 0.93850 1.20334 0.89711 0.91652 1.00653 1.19034 0.95472 1.06791 0.93874 1.20845 0.82695 0.75780 0.85359 1.90829 1.77968 1.55690 1.15339 1.86561 1.31150 1.67783 1.41568 1.22952 0.82578 0.93566 0.96329 1.22670 1.01013 0.93521 1.02108 1.20769 0.81999 1.00801 0.91573 1.44129 1.21263 1.00403 1.65701 1.19207 1.19667 0.93626 1.05941 0.91440 1.25078 1.00092 0.99703 0.94784 1.70037 1.50188 1.26850 1.07494 0.86248 0.78656 0.83428 0.78271 1.21431 1.21770 1.20333 1.20891 0.93795 0.86645 0.96551 1.22234 0.94070 1.00395 0.99999 1.21261 0.96265 0.92894 0.93746 1.20244 0.92331 1.04299 1.00245 1.19905 0.86143 0.91851 0.92805 1.86819 1.34418 1.61814 1.38161 0.91246 0.91198 0.90078 0.88770 0.88704 0.84194 0.90269 0.91663 0.92759 0.95935 0.88876 0.93533 0.96073 0.91773 0.92244 0.91100 0.83227 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.58 37.16 0.36 -0.31 16 2 C 0.08 0.49 4.26 -25.84 -0.11 0.38 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.10 -0.71 6.65 -26.50 -0.18 -0.89 16 5 C -0.19 -1.94 6.25 -104.13 -0.65 -2.59 16 6 C -0.01 -0.06 9.58 -39.32 -0.38 -0.44 16 7 C -0.15 -1.98 5.88 -104.94 -0.62 -2.60 16 8 C 0.51 8.35 7.87 34.49 0.27 8.62 16 9 O -0.51 -9.67 15.62 -19.26 -0.30 -9.97 16 10 O -0.35 -5.98 9.14 -40.62 -0.37 -6.35 16 11 C 0.10 1.87 2.42 -26.69 -0.06 1.80 16 12 C -0.15 -3.17 5.72 -26.61 -0.15 -3.32 16 13 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 14 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 15 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 16 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 17 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -26.32 11.22 55.49 0.62 -25.70 16 19 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 24 C -0.13 -2.28 5.74 -26.61 -0.15 -2.43 16 25 C -0.02 -0.26 9.59 -39.28 -0.38 -0.64 16 26 C -0.15 -1.52 10.05 -39.36 -0.40 -1.92 16 27 C 0.14 1.45 7.05 -38.71 -0.27 1.18 16 28 O -0.30 -2.89 10.79 -19.70 -0.21 -3.10 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.14 1.59 7.66 -52.49 -0.40 1.19 16 35 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.53 6.06 -51.93 -0.31 2.21 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.15 1.50 7.61 -52.49 -0.40 1.10 16 46 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -31.92 375.78 -10.07 -41.99 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.93 Total: -0.80 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.99 Total: -2.96 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.11 Total: -41.14 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.88 Total: -19.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.92 -10.07 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.510 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds