Wall clock time and date at job start Tue Mar 31 2020 17:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.66333 * 2 1 4 4 C 1.54703 * 110.74114 * 236.80211 * 2 1 3 5 5 C 1.51680 * 101.87980 * 216.24367 * 4 2 1 6 6 C 1.37282 * 132.07134 * 195.74889 * 5 4 2 7 7 C 1.39870 * 119.85772 * 179.57808 * 6 5 4 8 8 C 1.47469 * 120.27296 * 179.97438 * 7 6 5 9 9 O 1.21500 * 119.99825 * 0.02562 * 8 7 6 10 10 O 1.34746 * 119.99730 * 180.02562 * 8 7 6 11 11 C 1.45202 * 116.99722 * 179.97438 * 10 8 7 12 12 C 1.53038 * 109.45638 * 270.06345 * 11 10 8 13 13 C 1.53201 * 109.31193 * 178.61388 * 12 11 10 14 14 N 1.46927 * 108.77226 * 54.63527 * 13 12 11 15 15 C 1.36933 * 120.63211 * 126.37114 * 14 13 12 16 16 H 1.08004 * 120.00351 * 207.98337 * 15 14 13 17 17 C 1.38818 * 120.00148 * 27.97705 * 15 14 13 18 18 N 1.31622 * 119.99596 * 17.50610 * 17 15 14 19 19 Si 1.86794 * 120.00297 * 197.50377 * 17 15 14 20 20 H 1.48494 * 109.47168 * 94.07203 * 19 17 15 21 21 H 1.48507 * 109.46971 * 214.06705 * 19 17 15 22 22 H 1.48493 * 109.47265 * 334.06959 * 19 17 15 23 23 C 1.46928 * 118.73990 * 306.39213 * 14 13 12 24 24 C 1.53042 * 109.46069 * 149.99800 * 11 10 8 25 25 C 1.39809 * 119.45207 * 0.02562 * 7 6 5 26 26 C 1.37449 * 120.20218 * 0.17288 * 25 7 6 27 27 C 1.39203 * 106.98555 * 15.71989 * 5 4 2 28 28 O 1.35988 * 111.18878 * 0.62599 * 27 5 4 29 29 H 1.08998 * 109.47342 * 183.19573 * 1 2 3 30 30 H 1.08994 * 109.47409 * 303.19945 * 1 2 3 31 31 H 1.09003 * 109.46599 * 63.19698 * 1 2 3 32 32 H 1.08998 * 110.95307 * 334.39060 * 4 2 1 33 33 H 1.09002 * 110.94863 * 98.10204 * 4 2 1 34 34 H 1.07995 * 120.07141 * 359.62465 * 6 5 4 35 35 H 1.09000 * 109.46081 * 30.01879 * 11 10 8 36 36 H 1.08998 * 109.50047 * 298.56410 * 12 11 10 37 37 H 1.08996 * 109.50259 * 58.66733 * 12 11 10 38 38 H 1.08996 * 109.58516 * 294.84920 * 13 12 11 39 39 H 1.08994 * 109.58439 * 174.41866 * 13 12 11 40 40 H 0.96995 * 120.00204 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58525 * 293.81994 * 23 14 13 42 42 H 1.08998 * 109.58919 * 173.39933 * 23 14 13 43 43 H 1.09000 * 109.49381 * 301.33112 * 24 11 10 44 44 H 1.08995 * 109.49967 * 61.39403 * 24 11 10 45 45 H 1.07998 * 119.90004 * 180.15898 * 25 7 6 46 46 H 1.07997 * 119.77961 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0779 -0.7921 -1.2106 5 6 3.3080 -1.4542 -0.6197 6 6 4.3945 -2.0605 -1.1998 7 6 5.4086 -2.5899 -0.3949 8 6 6.5795 -3.2437 -1.0083 9 8 6.6665 -3.3236 -2.2175 10 8 7.5530 -3.7522 -0.2276 11 6 8.6755 -4.3819 -0.8998 12 6 8.3791 -5.8695 -1.1024 13 6 9.5504 -6.5233 -1.8425 14 7 10.7894 -6.2502 -1.1016 15 6 11.6160 -7.2742 -0.7230 16 1 12.2378 -7.1703 0.1540 17 6 11.6549 -8.4459 -1.4665 18 7 11.1841 -8.4613 -2.6955 19 14 12.3755 -10.0005 -0.7227 20 1 11.2868 -10.8127 -0.1225 21 1 13.0536 -10.7884 -1.7833 22 1 13.3588 -9.6365 0.3288 23 6 11.1244 -4.8577 -0.7740 24 6 9.9356 -4.2227 -0.0459 25 6 5.3023 -2.4952 0.9959 26 6 4.2081 -1.8897 1.5661 27 6 3.1932 -1.3636 0.7646 28 8 2.0389 -0.7399 1.1223 29 1 -0.3634 -1.0260 0.0573 30 1 -0.3634 0.5627 0.8599 31 1 -0.3632 0.4634 -0.9173 32 1 1.3575 -1.5379 -1.5468 33 1 2.3501 -0.1206 -2.0249 34 1 4.4665 -2.1279 -2.2752 35 1 8.8310 -3.9075 -1.8688 36 1 8.2480 -6.3498 -0.1328 37 1 7.4686 -5.9823 -1.6909 38 1 9.6260 -6.1069 -2.8470 39 1 9.3899 -7.5997 -1.9020 40 1 11.2115 -9.2799 -3.2151 41 1 11.3285 -4.3055 -1.6914 42 1 12.0025 -4.8352 -0.1286 43 1 10.1328 -3.1632 0.1175 44 1 9.7895 -4.7178 0.9140 45 1 6.0823 -2.8992 1.6242 46 1 4.1332 -1.8198 2.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:51 Heat of formation + Delta-G solvation = -91.919441 kcal Electronic energy + Delta-G solvation = -27720.446840 eV Core-core repulsion = 23768.170480 eV Total energy + Delta-G solvation = -3952.276360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36098 -41.54749 -39.29908 -38.31608 -37.26553 -34.61470 -34.25701 -32.47393 -32.00724 -31.60464 -31.32834 -27.87660 -27.09889 -25.41036 -23.98361 -23.67303 -23.00618 -22.71914 -21.73119 -21.03931 -19.02573 -18.88712 -18.58598 -17.92140 -17.58798 -17.00442 -16.84217 -16.38740 -15.90661 -15.42994 -15.32543 -15.26146 -14.92659 -14.66885 -14.60441 -14.31826 -14.20571 -14.09821 -13.91354 -13.47298 -13.39112 -13.26329 -13.09047 -13.01191 -12.82812 -12.64022 -12.38094 -12.25916 -12.12799 -11.95850 -11.90539 -11.86629 -11.74642 -11.69365 -11.41614 -11.08539 -10.56824 -10.09941 -9.36287 -8.77231 -7.90597 -5.36711 -0.43207 0.18530 1.39232 1.47264 1.49147 1.56226 1.58629 2.09816 2.50312 2.59297 3.25151 3.31854 3.44822 3.53077 3.62408 3.72164 3.78679 3.86813 3.98817 4.03414 4.14685 4.17683 4.21967 4.37666 4.42731 4.56167 4.60291 4.68386 4.72129 4.75881 4.81245 4.87496 4.90054 4.95948 5.03297 5.04985 5.06872 5.15944 5.21274 5.24280 5.24687 5.35238 5.40711 5.48152 5.61629 5.64944 6.01537 6.35500 6.66803 7.09649 7.79332 8.32457 9.17231 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.002078 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.845975 B =13474.500341 C =13578.280309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.195 4.195 6 C -0.012 4.012 7 C -0.173 4.173 8 C 0.508 3.492 9 O -0.543 6.543 10 O -0.345 6.345 11 C 0.106 3.894 12 C -0.140 4.140 13 C 0.184 3.816 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.075 0.925 17 C -0.054 4.054 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.264 1.264 23 C 0.143 3.857 24 C -0.113 4.113 25 C -0.019 4.019 26 C -0.152 4.152 27 C 0.138 3.862 28 O -0.309 6.309 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.053 0.947 38 H -0.004 1.004 39 H 0.062 0.938 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.160 0.840 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 19.829 8.246 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.122 0.878 4 C -0.139 4.139 5 C -0.196 4.196 6 C -0.031 4.031 7 C -0.175 4.175 8 C 0.355 3.645 9 O -0.435 6.435 10 O -0.261 6.261 11 C 0.052 3.948 12 C -0.179 4.179 13 C 0.058 3.942 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.093 0.907 17 C -0.249 4.249 18 N -0.584 5.584 19 Si 0.799 3.201 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.188 1.188 23 C 0.017 3.983 24 C -0.152 4.152 25 C -0.037 4.037 26 C -0.170 4.170 27 C 0.092 3.908 28 O -0.223 6.223 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.014 0.986 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.178 0.822 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.506 19.685 8.008 30.235 hybrid contribution 0.627 -1.249 -0.629 1.533 sum -20.879 18.436 7.380 28.814 Atomic orbital electron populations 1.21929 0.90174 1.03661 1.04642 1.23772 0.97267 0.95650 0.81815 0.87816 1.22016 0.93014 0.99821 0.99090 1.20898 0.98436 1.05993 0.94268 1.20353 0.90122 0.92092 1.00484 1.18942 0.94887 1.08672 0.94979 1.21464 0.82932 0.75037 0.85058 1.90813 1.78654 1.57233 1.16775 1.86562 1.30850 1.67708 1.41022 1.22672 0.83871 0.92012 0.96286 1.22419 0.99114 0.94945 1.01439 1.20470 0.83684 0.99022 0.91063 1.44377 1.21297 1.01950 1.65716 1.19581 1.19385 0.94391 1.05889 0.90732 1.25888 1.01176 1.02691 0.95125 1.70197 1.52047 1.27220 1.08889 0.85198 0.77995 0.79471 0.77458 1.21352 1.22337 1.18810 1.21069 0.95737 0.84516 0.96931 1.22048 0.91927 1.02151 0.99102 1.21356 0.96938 0.92647 0.92790 1.20477 0.91686 1.03441 1.01442 1.20152 0.86358 0.91294 0.93029 1.86823 1.33895 1.61851 1.39704 0.91864 0.90838 0.87905 0.87895 0.86892 0.84614 0.91739 0.91404 0.92847 0.98559 0.91992 0.94053 0.96446 0.90601 0.88913 0.90594 0.82210 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.58 71.98 0.69 -0.19 16 2 C 0.07 0.72 4.26 31.17 0.13 0.85 16 3 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.10 -1.16 6.65 30.74 0.20 -0.96 16 5 C -0.20 -3.63 6.25 -19.54 -0.12 -3.76 16 6 C -0.01 -0.28 9.58 22.44 0.21 -0.06 16 7 C -0.17 -4.47 5.88 -20.07 -0.12 -4.59 16 8 C 0.51 16.68 7.87 70.25 0.55 17.24 16 9 O -0.54 -21.16 15.62 19.84 0.31 -20.85 16 10 O -0.34 -11.37 9.14 -56.56 -0.52 -11.89 16 11 C 0.11 3.95 2.42 30.62 0.07 4.02 16 12 C -0.14 -5.87 5.72 30.67 0.18 -5.69 16 13 C 0.18 9.37 5.31 86.37 0.46 9.83 16 14 N -0.61 -31.10 2.99 -699.08 -2.09 -33.19 16 15 C -0.26 -14.42 9.58 84.04 0.81 -13.61 16 16 H 0.08 3.92 7.89 -2.91 -0.02 3.89 16 17 C -0.05 -3.02 4.90 84.86 0.42 -2.60 16 18 N -0.94 -56.53 11.22 21.65 0.24 -56.28 16 19 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 23 C 0.14 5.87 6.52 86.36 0.56 6.44 16 24 C -0.11 -3.85 5.74 30.67 0.18 -3.67 16 25 C -0.02 -0.40 9.59 22.46 0.22 -0.18 16 26 C -0.15 -2.70 10.05 22.42 0.23 -2.47 16 27 C 0.14 2.61 7.05 22.83 0.16 2.77 16 28 O -0.31 -5.26 10.79 -93.42 -1.01 -6.26 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 1.01 7.93 -2.39 -0.02 0.99 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.14 3.14 7.66 -2.91 -0.02 3.12 16 35 H 0.06 2.62 7.16 -2.39 -0.02 2.60 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.06 3.53 6.06 -2.39 -0.01 3.51 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 42 H 0.08 2.91 7.93 -2.39 -0.02 2.89 16 43 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.16 2.88 7.61 -2.91 -0.02 2.86 16 46 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.33 375.78 4.76 -65.57 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.98 Total: 12.48 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.82 Total: 3.35 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -1.85 Total: -89.48 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.22 Total: -39.01 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.33 4.76 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.351 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds