Wall clock time and date at job start Tue Mar 31 2020 17:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65972 * 2 1 4 4 C 1.54695 * 110.74732 * 123.19802 * 2 1 3 5 5 C 1.51685 * 101.91481 * 93.22345 * 4 2 1 6 6 C 1.37277 * 132.05631 * 195.63239 * 5 4 2 7 7 C 1.39877 * 119.85164 * 179.06967 * 6 5 4 8 8 C 1.47468 * 120.27171 * 180.02562 * 7 6 5 9 9 O 1.21511 * 119.99872 * 359.97438 * 8 7 6 10 10 O 1.34743 * 119.99817 * 179.97438 * 8 7 6 11 11 C 1.45207 * 116.99690 * 179.97438 * 10 8 7 12 12 C 1.53037 * 109.45810 * 270.06708 * 11 10 8 13 13 C 1.53198 * 109.30910 * 178.61607 * 12 11 10 14 14 N 1.46925 * 108.77534 * 54.63550 * 13 12 11 15 15 C 1.36936 * 120.62870 * 126.37108 * 14 13 12 16 16 H 1.07998 * 119.99845 * 207.69393 * 15 14 13 17 17 C 1.38808 * 120.00419 * 27.69260 * 15 14 13 18 18 N 1.31625 * 120.00019 * 17.35937 * 17 15 14 19 19 Si 1.86795 * 120.00172 * 197.36443 * 17 15 14 20 20 H 1.48502 * 109.47478 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47342 * 119.99677 * 19 17 15 22 22 H 1.48505 * 109.47198 * 239.99538 * 19 17 15 23 23 C 1.46926 * 118.73798 * 306.38869 * 14 13 12 24 24 C 1.53040 * 109.45949 * 149.99813 * 11 10 8 25 25 C 1.39812 * 119.45431 * 0.02562 * 7 6 5 26 26 C 1.37447 * 120.20105 * 0.18568 * 25 7 6 27 27 C 1.39204 * 106.99947 * 15.16228 * 5 4 2 28 28 O 1.35990 * 111.15480 * 1.45431 * 27 5 4 29 29 H 1.08998 * 109.47403 * 296.79369 * 1 2 3 30 30 H 1.09004 * 109.47182 * 56.80098 * 1 2 3 31 31 H 1.08999 * 109.46269 * 176.79592 * 1 2 3 32 32 H 1.09002 * 110.94233 * 335.06876 * 4 2 1 33 33 H 1.08996 * 110.97407 * 211.39270 * 4 2 1 34 34 H 1.07997 * 120.08056 * 359.08578 * 6 5 4 35 35 H 1.08999 * 109.45628 * 30.03086 * 11 10 8 36 36 H 1.08997 * 109.49962 * 298.56429 * 12 11 10 37 37 H 1.08996 * 109.50207 * 58.66582 * 12 11 10 38 38 H 1.08998 * 109.58556 * 294.84462 * 13 12 11 39 39 H 1.09005 * 109.58429 * 174.42053 * 13 12 11 40 40 H 0.96993 * 120.00186 * 180.02562 * 18 17 15 41 41 H 1.08991 * 109.58768 * 293.82459 * 23 14 13 42 42 H 1.09003 * 109.58390 * 173.39425 * 23 14 13 43 43 H 1.09000 * 109.49665 * 301.34028 * 24 11 10 44 44 H 1.09003 * 109.49752 * 61.42911 * 24 11 10 45 45 H 1.08008 * 119.89666 * 180.46463 * 25 7 6 46 46 H 1.08000 * 119.77998 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0780 -0.7921 1.2105 5 6 2.2670 -2.1762 0.6195 6 6 2.4547 -3.4061 1.1997 7 6 2.5843 -4.5430 0.3952 8 6 2.7857 -5.8688 1.0087 9 8 2.8401 -5.9768 2.2178 10 8 2.9093 -6.9604 0.2285 11 6 3.1059 -8.2323 0.9009 12 6 4.6036 -8.4823 1.0911 13 6 4.8059 -9.8083 1.8313 14 7 4.1050 -10.8711 1.0978 15 6 4.7662 -12.0076 0.7153 16 1 4.4383 -12.5558 -0.1555 17 6 5.8578 -12.4550 1.4466 18 7 6.0558 -12.0131 2.6706 19 14 7.0461 -13.6841 0.6938 20 1 6.6034 -14.0211 -0.6831 21 1 8.4069 -13.0914 0.6456 22 1 7.0724 -14.9174 1.5206 23 6 2.6814 -10.6910 0.7822 24 6 2.5029 -9.3553 0.0538 25 6 2.5214 -4.4120 -0.9953 26 6 2.3375 -3.1751 -1.5657 27 6 2.2114 -2.0388 -0.7646 28 8 2.0429 -0.7376 -1.1223 29 1 -0.3634 0.4632 0.9173 30 1 -0.3634 0.5627 -0.8599 31 1 -0.3632 -1.0261 -0.0574 32 1 1.3527 -0.8115 2.0240 33 1 3.0286 -0.3797 1.5486 34 1 2.5019 -3.4958 2.2749 35 1 2.6154 -8.2082 1.8740 36 1 5.0909 -8.5314 0.1173 37 1 5.0369 -7.6701 1.6747 38 1 4.3984 -9.7299 2.8392 39 1 5.8698 -10.0398 1.8821 40 1 6.8188 -12.3254 3.1815 41 1 2.1006 -10.6846 1.7045 42 1 2.3436 -11.5050 0.1407 43 1 1.4410 -9.1642 -0.1009 44 1 3.0099 -9.3960 -0.9103 45 1 2.6131 -5.2862 -1.6231 46 1 2.2894 -3.0818 -2.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:56 Heat of formation + Delta-G solvation = -75.144319 kcal Electronic energy + Delta-G solvation = -27840.420521 eV Core-core repulsion = 23888.871585 eV Total energy + Delta-G solvation = -3951.548936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67350 -40.24907 -37.98129 -37.09043 -35.74650 -33.61213 -32.72510 -31.38599 -30.75542 -30.19026 -29.65516 -27.31766 -25.45563 -24.24254 -22.41499 -22.26570 -22.07875 -21.98228 -20.48857 -19.31837 -17.91641 -17.53984 -17.05742 -16.68254 -16.45793 -16.10032 -15.56753 -14.91487 -14.57956 -14.49017 -14.07328 -13.91491 -13.62503 -13.51143 -13.41145 -13.10293 -13.04990 -12.81265 -12.75082 -12.58429 -12.50680 -12.45355 -11.67582 -11.52830 -11.34190 -11.17477 -11.15707 -11.09304 -10.75423 -10.66809 -10.34675 -10.32101 -10.19005 -9.90446 -9.66379 -9.40151 -9.28729 -8.55362 -8.48519 -6.73341 -5.81038 -3.23728 0.51665 0.99414 2.49146 2.77151 2.90170 3.37190 3.44983 3.47249 3.51897 3.94280 4.11294 4.37225 4.46541 4.48192 4.65708 4.70245 4.80502 4.96727 5.09588 5.12638 5.25263 5.26661 5.34636 5.37190 5.38160 5.44191 5.53138 5.61380 5.66126 5.73498 5.82484 5.96426 6.02309 6.05917 6.16599 6.21553 6.31514 6.47150 6.53308 6.60449 6.70203 6.74485 6.87157 6.94900 7.32009 7.62013 7.78358 7.98960 8.41941 9.17860 9.81007 10.37226 11.27931 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.002121 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.174296 B =13200.295454 C =13291.200412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.075 3.925 3 H 0.118 0.882 4 C -0.104 4.104 5 C -0.189 4.189 6 C -0.006 4.006 7 C -0.150 4.150 8 C 0.508 3.492 9 O -0.509 6.509 10 O -0.354 6.354 11 C 0.099 3.901 12 C -0.154 4.154 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.148 3.852 24 C -0.128 4.128 25 C -0.024 4.024 26 C -0.153 4.153 27 C 0.138 3.862 28 O -0.296 6.296 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.150 0.850 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 24.679 -6.152 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.136 0.864 4 C -0.141 4.141 5 C -0.190 4.190 6 C -0.024 4.024 7 C -0.151 4.151 8 C 0.353 3.647 9 O -0.398 6.398 10 O -0.271 6.271 11 C 0.046 3.954 12 C -0.193 4.193 13 C 0.048 3.952 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.021 3.979 24 C -0.167 4.167 25 C -0.042 4.042 26 C -0.171 4.171 27 C 0.092 3.908 28 O -0.210 6.210 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.167 0.833 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.429 24.646 -5.891 27.402 hybrid contribution 0.690 -0.572 0.007 0.897 sum -9.739 24.073 -5.884 26.627 Atomic orbital electron populations 1.22266 0.93910 1.03518 1.03281 1.23488 0.94923 0.96467 0.83147 0.86393 1.21870 1.03000 0.90812 0.98445 1.20596 1.09251 0.95331 0.93853 1.20331 0.92495 0.88971 1.00636 1.19035 1.11329 0.90890 0.93873 1.20851 0.73231 0.85253 0.85356 1.90832 1.46848 1.86807 1.15350 1.86562 1.81962 1.16944 1.41589 1.22953 0.98242 0.77890 0.96349 1.22668 0.93356 1.01138 1.02139 1.20779 0.99993 0.82786 0.91619 1.44141 1.03847 1.17452 1.66104 1.19227 1.10488 1.02116 1.06487 0.91416 1.25071 1.01118 0.98683 0.94848 1.70041 1.29761 1.46672 1.08137 0.86211 0.81159 0.80612 0.78707 1.20195 1.21520 1.21715 1.20890 0.87344 0.93079 0.96577 1.22234 0.99375 0.95024 1.00063 1.21261 0.91994 0.97251 0.93740 1.20248 1.07639 0.88974 1.00256 1.19914 0.93076 0.85027 0.92801 1.86872 1.79178 1.16449 1.38461 0.90419 0.91216 0.91668 0.88634 0.88802 0.84217 0.90274 0.91664 0.92760 0.95953 0.88789 0.93573 0.96076 0.91772 0.92244 0.91097 0.83256 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 9.51 37.16 0.35 -0.55 16 2 C 0.08 0.47 4.30 -25.84 -0.11 0.36 16 3 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.10 -0.70 6.65 -26.51 -0.18 -0.87 16 5 C -0.19 -1.88 6.25 -104.13 -0.65 -2.53 16 6 C -0.01 -0.07 9.58 -39.32 -0.38 -0.45 16 7 C -0.15 -1.97 5.88 -104.94 -0.62 -2.58 16 8 C 0.51 8.33 7.87 34.49 0.27 8.60 16 9 O -0.51 -9.66 15.62 -19.27 -0.30 -9.96 16 10 O -0.35 -5.98 9.14 -40.61 -0.37 -6.35 16 11 C 0.10 1.87 2.42 -26.69 -0.06 1.80 16 12 C -0.15 -3.17 5.72 -26.61 -0.15 -3.32 16 13 C 0.17 4.28 5.31 -3.71 -0.02 4.26 16 14 N -0.59 -14.95 2.99 -172.32 -0.52 -15.46 16 15 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 16 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 19 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 24 C -0.13 -2.28 5.74 -26.61 -0.15 -2.43 16 25 C -0.02 -0.27 9.59 -39.28 -0.38 -0.64 16 26 C -0.15 -1.51 10.05 -39.36 -0.40 -1.91 16 27 C 0.14 1.42 6.91 -38.72 -0.27 1.15 16 28 O -0.30 -2.81 10.82 -19.71 -0.21 -3.03 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.10 0.50 7.92 -51.93 -0.41 0.09 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.14 1.59 7.66 -52.49 -0.40 1.18 16 35 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.55 6.04 -51.93 -0.31 2.24 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.15 1.49 7.61 -52.48 -0.40 1.09 16 46 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -31.95 375.52 -10.07 -42.02 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.93 Total: -0.64 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.99 Total: -3.18 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.10 Total: -41.17 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.89 Total: -19.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.95 -10.07 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.124 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds