Wall clock time and date at job start Tue Mar 31 2020 17:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65972 * 2 1 4 4 C 1.54695 * 110.74732 * 123.19802 * 2 1 3 5 5 C 1.51685 * 101.91481 * 93.22345 * 4 2 1 6 6 C 1.37277 * 132.05631 * 195.63239 * 5 4 2 7 7 C 1.39877 * 119.85164 * 179.06967 * 6 5 4 8 8 C 1.47468 * 120.27171 * 180.02562 * 7 6 5 9 9 O 1.21511 * 119.99872 * 359.97438 * 8 7 6 10 10 O 1.34743 * 119.99817 * 179.97438 * 8 7 6 11 11 C 1.45207 * 116.99690 * 179.97438 * 10 8 7 12 12 C 1.53037 * 109.45810 * 270.06708 * 11 10 8 13 13 C 1.53198 * 109.30910 * 178.61607 * 12 11 10 14 14 N 1.46925 * 108.77534 * 54.63550 * 13 12 11 15 15 C 1.36936 * 120.62870 * 126.37108 * 14 13 12 16 16 H 1.07998 * 119.99845 * 207.69393 * 15 14 13 17 17 C 1.38808 * 120.00419 * 27.69260 * 15 14 13 18 18 N 1.31625 * 120.00019 * 17.35937 * 17 15 14 19 19 Si 1.86795 * 120.00172 * 197.36443 * 17 15 14 20 20 H 1.48502 * 109.47478 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47342 * 119.99677 * 19 17 15 22 22 H 1.48505 * 109.47198 * 239.99538 * 19 17 15 23 23 C 1.46926 * 118.73798 * 306.38869 * 14 13 12 24 24 C 1.53040 * 109.45949 * 149.99813 * 11 10 8 25 25 C 1.39812 * 119.45431 * 0.02562 * 7 6 5 26 26 C 1.37447 * 120.20105 * 0.18568 * 25 7 6 27 27 C 1.39204 * 106.99947 * 15.16228 * 5 4 2 28 28 O 1.35990 * 111.15480 * 1.45431 * 27 5 4 29 29 H 1.08998 * 109.47403 * 296.79369 * 1 2 3 30 30 H 1.09004 * 109.47182 * 56.80098 * 1 2 3 31 31 H 1.08999 * 109.46269 * 176.79592 * 1 2 3 32 32 H 1.09002 * 110.94233 * 335.06876 * 4 2 1 33 33 H 1.08996 * 110.97407 * 211.39270 * 4 2 1 34 34 H 1.07997 * 120.08056 * 359.08578 * 6 5 4 35 35 H 1.08999 * 109.45628 * 30.03086 * 11 10 8 36 36 H 1.08997 * 109.49962 * 298.56429 * 12 11 10 37 37 H 1.08996 * 109.50207 * 58.66582 * 12 11 10 38 38 H 1.08998 * 109.58556 * 294.84462 * 13 12 11 39 39 H 1.09005 * 109.58429 * 174.42053 * 13 12 11 40 40 H 0.96993 * 120.00186 * 180.02562 * 18 17 15 41 41 H 1.08991 * 109.58768 * 293.82459 * 23 14 13 42 42 H 1.09003 * 109.58390 * 173.39425 * 23 14 13 43 43 H 1.09000 * 109.49665 * 301.34028 * 24 11 10 44 44 H 1.09003 * 109.49752 * 61.42911 * 24 11 10 45 45 H 1.08008 * 119.89666 * 180.46463 * 25 7 6 46 46 H 1.08000 * 119.77998 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0780 -0.7921 1.2105 5 6 2.2670 -2.1762 0.6195 6 6 2.4547 -3.4061 1.1997 7 6 2.5843 -4.5430 0.3952 8 6 2.7857 -5.8688 1.0087 9 8 2.8401 -5.9768 2.2178 10 8 2.9093 -6.9604 0.2285 11 6 3.1059 -8.2323 0.9009 12 6 4.6036 -8.4823 1.0911 13 6 4.8059 -9.8083 1.8313 14 7 4.1050 -10.8711 1.0978 15 6 4.7662 -12.0076 0.7153 16 1 4.4383 -12.5558 -0.1555 17 6 5.8578 -12.4550 1.4466 18 7 6.0558 -12.0131 2.6706 19 14 7.0461 -13.6841 0.6938 20 1 6.6034 -14.0211 -0.6831 21 1 8.4069 -13.0914 0.6456 22 1 7.0724 -14.9174 1.5206 23 6 2.6814 -10.6910 0.7822 24 6 2.5029 -9.3553 0.0538 25 6 2.5214 -4.4120 -0.9953 26 6 2.3375 -3.1751 -1.5657 27 6 2.2114 -2.0388 -0.7646 28 8 2.0429 -0.7376 -1.1223 29 1 -0.3634 0.4632 0.9173 30 1 -0.3634 0.5627 -0.8599 31 1 -0.3632 -1.0261 -0.0574 32 1 1.3527 -0.8115 2.0240 33 1 3.0286 -0.3797 1.5486 34 1 2.5019 -3.4958 2.2749 35 1 2.6154 -8.2082 1.8740 36 1 5.0909 -8.5314 0.1173 37 1 5.0369 -7.6701 1.6747 38 1 4.3984 -9.7299 2.8392 39 1 5.8698 -10.0398 1.8821 40 1 6.8188 -12.3254 3.1815 41 1 2.1006 -10.6846 1.7045 42 1 2.3436 -11.5050 0.1407 43 1 1.4410 -9.1642 -0.1009 44 1 3.0099 -9.3960 -0.9103 45 1 2.6131 -5.2862 -1.6231 46 1 2.2894 -3.0818 -2.6406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:55 Heat of formation + Delta-G solvation = -91.643663 kcal Electronic energy + Delta-G solvation = -27841.135987 eV Core-core repulsion = 23888.871585 eV Total energy + Delta-G solvation = -3952.264401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40640 -41.55529 -39.29906 -38.30272 -37.26417 -34.61740 -34.22249 -32.34991 -31.89714 -31.60271 -31.33055 -27.96347 -27.17417 -25.50760 -23.98544 -23.68587 -23.15035 -22.60201 -21.71370 -21.04001 -19.02375 -18.88016 -18.27860 -17.92509 -17.33656 -16.98768 -16.88362 -16.77017 -15.90409 -15.42828 -15.26319 -15.25691 -14.93916 -14.65924 -14.61747 -14.48910 -14.21969 -14.09763 -13.71401 -13.62794 -13.27556 -13.23598 -13.09558 -13.03005 -12.84275 -12.64436 -12.37248 -12.19172 -12.12759 -11.94863 -11.89430 -11.86555 -11.82603 -11.69469 -11.41469 -11.08874 -10.57394 -10.08484 -9.35490 -8.77646 -7.90725 -5.36667 -0.42579 0.19597 1.39569 1.46441 1.48782 1.56372 1.59747 2.15039 2.50147 2.60667 3.25330 3.34673 3.45682 3.53374 3.62353 3.75563 3.78556 3.86763 3.93083 4.03693 4.14659 4.19353 4.26853 4.37531 4.40288 4.56063 4.59399 4.70558 4.73575 4.76621 4.78331 4.87361 4.90751 4.95794 5.02712 5.04448 5.06937 5.17353 5.21399 5.23749 5.24742 5.35444 5.39469 5.48357 5.61643 5.64975 6.02107 6.35352 6.66932 7.09497 7.79206 8.32083 9.17212 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.002121 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.174296 B =13200.295454 C =13291.200412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.146 0.854 4 C -0.104 4.104 5 C -0.192 4.192 6 C -0.013 4.013 7 C -0.173 4.173 8 C 0.508 3.492 9 O -0.543 6.543 10 O -0.345 6.345 11 C 0.106 3.894 12 C -0.140 4.140 13 C 0.184 3.816 14 N -0.611 5.611 15 C -0.261 4.261 16 H 0.075 0.925 17 C -0.055 4.055 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.143 3.857 24 C -0.113 4.113 25 C -0.020 4.020 26 C -0.153 4.153 27 C 0.138 3.862 28 O -0.306 6.306 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.053 0.947 38 H -0.004 1.004 39 H 0.063 0.937 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.159 0.841 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 26.710 -8.222 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.017 3.983 3 H 0.163 0.837 4 C -0.140 4.140 5 C -0.193 4.193 6 C -0.032 4.032 7 C -0.175 4.175 8 C 0.355 3.645 9 O -0.435 6.435 10 O -0.262 6.262 11 C 0.051 3.949 12 C -0.179 4.179 13 C 0.057 3.943 14 N -0.334 5.334 15 C -0.391 4.391 16 H 0.093 0.907 17 C -0.250 4.250 18 N -0.584 5.584 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.218 1.218 22 H -0.220 1.220 23 C 0.017 3.983 24 C -0.152 4.152 25 C -0.038 4.038 26 C -0.171 4.171 27 C 0.092 3.908 28 O -0.220 6.220 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.014 0.986 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.177 0.823 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.524 26.701 -7.994 30.160 hybrid contribution 0.935 -1.040 0.651 1.543 sum -10.588 25.661 -7.343 28.715 Atomic orbital electron populations 1.22280 0.93168 1.02711 1.04620 1.23824 0.95568 0.97209 0.81747 0.83694 1.22020 1.04195 0.88731 0.99083 1.20889 1.08078 0.96046 0.94273 1.20350 0.92973 0.89406 1.00442 1.18941 1.14228 0.89334 0.94970 1.21476 0.72047 0.85931 0.85055 1.90815 1.48710 1.87187 1.16789 1.86562 1.82091 1.16446 1.41053 1.22673 0.96460 0.79423 0.96294 1.22416 0.95256 0.98761 1.01465 1.20479 0.97921 0.84779 0.91085 1.44395 1.05759 1.17141 1.66118 1.19601 1.10668 1.02420 1.06425 0.90710 1.25883 1.02889 1.00974 0.95220 1.70201 1.30231 1.48437 1.09542 0.85160 0.78590 0.78027 0.78376 1.18649 1.21817 1.21987 1.21069 0.84867 0.95359 0.96969 1.22048 1.01443 0.92569 0.99165 1.21350 0.91485 0.98226 0.92789 1.20478 1.06817 0.88411 1.01439 1.20152 0.92052 0.85634 0.92999 1.86872 1.79095 1.15996 1.40005 0.88392 0.90727 0.93397 0.87054 0.87614 0.84679 0.91748 0.91400 0.92853 0.98587 0.91899 0.94053 0.96441 0.90588 0.88911 0.90604 0.82299 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.51 71.98 0.68 -0.64 16 2 C 0.07 0.68 4.30 31.17 0.13 0.81 16 3 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.10 -1.12 6.65 30.74 0.20 -0.91 16 5 C -0.19 -3.52 6.25 -19.54 -0.12 -3.64 16 6 C -0.01 -0.31 9.58 22.44 0.21 -0.09 16 7 C -0.17 -4.48 5.88 -20.07 -0.12 -4.60 16 8 C 0.51 16.71 7.87 70.25 0.55 17.27 16 9 O -0.54 -21.21 15.62 19.80 0.31 -20.90 16 10 O -0.35 -11.41 9.14 -56.53 -0.52 -11.92 16 11 C 0.11 3.95 2.42 30.62 0.07 4.03 16 12 C -0.14 -5.87 5.72 30.67 0.18 -5.69 16 13 C 0.18 9.37 5.31 86.36 0.46 9.83 16 14 N -0.61 -31.19 2.99 -699.11 -2.09 -33.28 16 15 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 16 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 17 C -0.05 -3.08 4.91 84.86 0.42 -2.66 16 18 N -0.94 -56.57 11.19 21.65 0.24 -56.33 16 19 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.14 5.87 6.52 86.36 0.56 6.44 16 24 C -0.11 -3.85 5.74 30.67 0.18 -3.67 16 25 C -0.02 -0.42 9.59 22.46 0.22 -0.21 16 26 C -0.15 -2.72 10.05 22.41 0.23 -2.49 16 27 C 0.14 2.56 6.91 22.83 0.16 2.72 16 28 O -0.31 -5.03 10.82 -93.43 -1.01 -6.04 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.11 0.86 7.92 -2.39 -0.02 0.85 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.14 3.13 7.66 -2.91 -0.02 3.11 16 35 H 0.06 2.62 7.16 -2.39 -0.02 2.60 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.06 3.59 6.04 -2.38 -0.01 3.57 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 43 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.16 2.89 7.61 -2.91 -0.02 2.87 16 46 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.62 375.52 4.76 -65.86 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.98 Total: 12.58 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.82 Total: 2.92 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -1.85 Total: -89.60 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.22 Total: -38.86 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.62 4.76 -65.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.781 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds