Wall clock time and date at job start Tue Mar 31 2020 15:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 H 1.08994 * 109.47269 * 304.99931 * 3 2 1 5 5 C 1.50707 * 109.46988 * 184.99831 * 3 2 1 6 6 H 1.08000 * 119.99803 * 239.99864 * 5 3 2 7 7 C 1.37873 * 119.99892 * 60.00233 * 5 3 2 8 8 N 1.31516 * 119.99846 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47042 * 59.99947 * 9 7 5 11 11 H 1.48501 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46918 * 299.99985 * 9 7 5 13 13 O 1.45202 * 109.47274 * 65.00175 * 3 2 1 14 14 C 1.34227 * 116.99774 * 270.00465 * 13 3 2 15 15 O 1.20823 * 120.00092 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00080 * 179.97438 * 14 13 3 17 17 H 1.09005 * 110.91828 * 56.09218 * 16 14 13 18 18 C 1.55158 * 111.00646 * 179.97438 * 16 14 13 19 19 C 1.54317 * 103.10257 * 153.66581 * 18 16 14 20 20 N 1.47031 * 107.27270 * 337.71922 * 19 18 16 21 21 C 1.34775 * 125.64861 * 178.90786 * 20 19 18 22 22 O 1.21556 * 119.99582 * 174.97506 * 21 20 19 23 23 C 1.47845 * 120.00094 * 354.97249 * 21 20 19 24 24 C 1.39576 * 120.14275 * 7.76188 * 23 21 20 25 25 C 1.37965 * 119.84897 * 179.79230 * 24 23 21 26 26 C 1.38356 * 120.14663 * 0.48227 * 25 24 23 27 27 C 1.38362 * 120.29276 * 359.74867 * 26 25 24 28 28 C 1.37960 * 120.14208 * 0.02562 * 27 26 25 29 29 C 1.47417 * 108.69890 * 358.94255 * 20 19 18 30 30 H 1.09005 * 109.47015 * 299.99850 * 1 2 3 31 31 H 1.09002 * 109.46830 * 59.99819 * 1 2 3 32 32 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47121 * 239.99609 * 2 1 3 34 34 H 1.09002 * 109.46830 * 120.00181 * 2 1 3 35 35 H 0.97002 * 119.99633 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.71706 * 35.21329 * 18 16 14 37 37 H 1.08999 * 110.71978 * 272.11934 * 18 16 14 38 38 H 1.09003 * 109.88571 * 97.13745 * 19 18 16 39 39 H 1.09000 * 109.88700 * 218.14661 * 19 18 16 40 40 H 1.08002 * 120.07519 * 359.97438 * 24 23 21 41 41 H 1.07997 * 119.92369 * 180.23164 * 25 24 23 42 42 H 1.07994 * 119.85809 * 179.72184 * 26 25 24 43 43 H 1.08001 * 119.93193 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.06983 * 179.97438 * 28 27 26 45 45 H 1.09003 * 110.36811 * 142.97222 * 29 20 19 46 46 H 1.09002 * 110.36762 * 265.28797 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2165 -2.6503 12 1 6.4995 2.2812 -1.3820 13 8 1.6560 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7376 0.2654 16 6 0.0070 3.4216 2.5087 17 1 0.7414 4.1548 2.8424 18 6 -1.3804 4.0824 2.2947 19 6 -1.9750 4.1163 3.7183 20 7 -1.2834 3.0846 4.5051 21 6 -1.5015 2.8116 5.8067 22 8 -0.9356 1.8739 6.3341 23 6 -2.4289 3.6526 6.5932 24 6 -3.2019 4.6260 5.9583 25 6 -4.0685 5.4045 6.6974 26 6 -4.1650 5.2288 8.0664 27 6 -3.3980 4.2689 8.7026 28 6 -2.5309 3.4806 7.9745 29 6 -0.3112 2.3989 3.6345 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0610 -2.9499 36 1 -1.9985 3.4756 1.6330 37 1 -1.2698 5.0919 1.8988 38 1 -1.8099 5.0965 4.1658 39 1 -3.0430 3.9021 3.6793 40 1 -3.1240 4.7674 4.8904 41 1 -4.6700 6.1555 6.2069 42 1 -4.8416 5.8438 8.6410 43 1 -3.4776 4.1369 9.7715 44 1 -1.9324 2.7320 8.4724 45 1 0.5929 2.1563 4.1928 46 1 -0.7513 1.4954 3.2124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860694170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:50 Heat of formation + Delta-G solvation = -75.987842 kcal Electronic energy + Delta-G solvation = -28219.662060 eV Core-core repulsion = 24268.076547 eV Total energy + Delta-G solvation = -3951.585514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90241 -39.81191 -38.58304 -37.42636 -35.79625 -33.55988 -32.71427 -31.40182 -31.30732 -31.02335 -29.42792 -27.28545 -25.45552 -23.84927 -23.03123 -22.77251 -22.17229 -20.35345 -20.14633 -19.37237 -17.67275 -17.51403 -16.76416 -16.63387 -16.28029 -15.92669 -15.38715 -15.15406 -14.78187 -14.55856 -14.43238 -14.12779 -13.85422 -13.76133 -13.27214 -13.14682 -12.88751 -12.83249 -12.58010 -12.36009 -12.04165 -11.69850 -11.49760 -11.45793 -11.31514 -11.15855 -11.02315 -10.96445 -10.87908 -10.66970 -10.31356 -10.12617 -9.83135 -9.65582 -9.39875 -9.34428 -9.32206 -8.87332 -8.84465 -8.47388 -6.20402 -4.27657 0.55301 1.02010 2.56325 2.64358 2.90492 3.25368 3.29104 3.31044 3.54212 3.58089 4.08286 4.25321 4.34156 4.41868 4.57839 4.64414 4.72389 4.77997 5.00767 5.05086 5.06669 5.11611 5.14561 5.16840 5.44360 5.61303 5.62410 5.66519 5.76142 5.81646 5.87865 5.98920 6.03915 6.08820 6.12725 6.20455 6.26775 6.42650 6.53818 6.83719 6.92612 7.13248 7.21217 7.24347 7.59117 7.70948 7.90428 7.93578 8.12980 8.57192 8.84792 9.37640 10.86238 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002382 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.575023 B =11754.407297 C =12057.257546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.352 6.352 14 C 0.465 3.535 15 O -0.510 6.510 16 C -0.101 4.101 17 H 0.117 0.883 18 C -0.120 4.120 19 C 0.090 3.910 20 N -0.612 5.612 21 C 0.573 3.427 22 O -0.532 6.532 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.098 4.098 27 C -0.130 4.130 28 C -0.061 4.061 29 C 0.123 3.877 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.161 0.839 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.095 0.905 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 10.908 16.260 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.267 6.267 14 C 0.306 3.694 15 O -0.400 6.400 16 C -0.121 4.121 17 H 0.135 0.865 18 C -0.157 4.157 19 C -0.033 4.033 20 N -0.346 5.346 21 C 0.363 3.637 22 O -0.410 6.410 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.148 4.148 28 C -0.080 4.080 29 C 0.001 3.999 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.113 0.887 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.239 10.243 16.110 24.427 hybrid contribution 0.844 -0.009 -0.251 0.881 sum -14.395 10.233 15.859 23.737 Atomic orbital electron populations 1.21858 0.98401 0.99073 1.00592 1.22026 0.92602 0.99334 1.03474 1.20705 0.95058 0.88788 0.78482 0.93465 1.21002 0.89656 1.39141 1.06263 0.91360 1.24880 0.99248 0.94722 0.95056 1.69878 1.35486 1.37722 1.09467 0.86338 0.83864 0.78486 0.77494 1.19912 1.21035 1.19996 1.86491 1.33904 1.62090 1.44252 1.22643 0.81062 0.76971 0.88707 1.90615 1.55562 1.58232 1.35602 1.22238 0.98734 0.98382 0.92708 0.86461 1.22705 0.94629 1.02977 0.95434 1.22643 0.96996 0.92020 0.91606 1.48305 1.40104 1.37015 1.09206 1.17989 0.81747 0.84069 0.79917 1.90804 1.50655 1.29780 1.69738 1.19877 0.99925 0.98887 0.94504 1.22792 0.94617 0.93897 1.02859 1.21185 0.99216 1.00104 0.94228 1.21415 0.98070 0.97176 0.94951 1.21166 0.96936 0.96419 1.00287 1.21312 0.96502 0.97697 0.92468 1.22182 0.93372 0.94490 0.89874 0.95083 0.92816 0.94767 0.87295 0.93884 0.92311 0.88528 0.88871 0.89903 0.89858 0.82213 0.85404 0.85705 0.85352 0.84681 0.88660 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.57 37.16 0.32 -2.72 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.75 2.25 -27.88 -0.06 5.69 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.41 8.90 -34.44 -0.31 -14.71 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -7.99 9.81 -39.25 -0.38 -8.37 16 14 C 0.46 8.88 5.75 36.01 0.21 9.09 16 15 O -0.51 -10.80 12.86 -18.75 -0.24 -11.04 16 16 C -0.10 -1.37 3.56 -89.36 -0.32 -1.69 16 17 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.12 -1.24 6.07 -24.90 -0.15 -1.39 16 19 C 0.09 0.77 4.87 -3.06 -0.01 0.75 16 20 N -0.61 -7.44 3.33 -174.86 -0.58 -8.02 16 21 C 0.57 7.82 7.81 -12.33 -0.10 7.73 16 22 O -0.53 -9.18 16.67 5.32 0.09 -9.09 16 23 C -0.13 -1.41 5.87 -104.97 -0.62 -2.02 16 24 C -0.12 -1.02 8.60 -39.18 -0.34 -1.36 16 25 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 26 C -0.10 -0.65 10.04 -39.49 -0.40 -1.05 16 27 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 28 C -0.06 -0.61 9.59 -39.19 -0.38 -0.99 16 29 C 0.12 1.71 6.37 -2.27 -0.01 1.70 16 30 H 0.03 0.63 6.06 -51.93 -0.31 0.31 16 31 H 0.05 1.20 7.80 -51.93 -0.40 0.79 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.10 1.13 7.39 -51.93 -0.38 0.75 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.55 6.67 -51.93 -0.35 0.20 16 39 H 0.08 0.58 6.79 -51.93 -0.35 0.22 16 40 H 0.16 1.04 2.77 -57.07 -0.16 0.88 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.14 1.38 7.67 -52.48 -0.40 0.98 16 45 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 46 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -32.54 371.15 -9.51 -42.05 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.39 Total: 2.66 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.20 Total: -5.51 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.04 Total: -32.17 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.54 Total: -28.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.54 -9.51 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.939 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds