Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47300 * 2 1 4 4 H 1.08994 * 109.47269 * 304.99931 * 3 2 1 5 5 C 1.50707 * 109.46988 * 184.99831 * 3 2 1 6 6 H 1.08000 * 119.99803 * 239.99864 * 5 3 2 7 7 C 1.37873 * 119.99892 * 60.00233 * 5 3 2 8 8 N 1.31516 * 119.99846 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47042 * 59.99947 * 9 7 5 11 11 H 1.48501 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46918 * 299.99985 * 9 7 5 13 13 O 1.45202 * 109.47274 * 65.00175 * 3 2 1 14 14 C 1.34227 * 116.99774 * 270.00465 * 13 3 2 15 15 O 1.20823 * 120.00092 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00080 * 179.97438 * 14 13 3 17 17 H 1.09005 * 110.91828 * 56.09218 * 16 14 13 18 18 C 1.55158 * 111.00646 * 179.97438 * 16 14 13 19 19 C 1.54317 * 103.10257 * 153.66581 * 18 16 14 20 20 N 1.47031 * 107.27270 * 337.71922 * 19 18 16 21 21 C 1.34775 * 125.64861 * 178.90786 * 20 19 18 22 22 O 1.21556 * 119.99582 * 174.97506 * 21 20 19 23 23 C 1.47845 * 120.00094 * 354.97249 * 21 20 19 24 24 C 1.39576 * 120.14275 * 7.76188 * 23 21 20 25 25 C 1.37965 * 119.84897 * 179.79230 * 24 23 21 26 26 C 1.38356 * 120.14663 * 0.48227 * 25 24 23 27 27 C 1.38362 * 120.29276 * 359.74867 * 26 25 24 28 28 C 1.37960 * 120.14208 * 0.02562 * 27 26 25 29 29 C 1.47417 * 108.69890 * 358.94255 * 20 19 18 30 30 H 1.09005 * 109.47015 * 299.99850 * 1 2 3 31 31 H 1.09002 * 109.46830 * 59.99819 * 1 2 3 32 32 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47121 * 239.99609 * 2 1 3 34 34 H 1.09002 * 109.46830 * 120.00181 * 2 1 3 35 35 H 0.97002 * 119.99633 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.71706 * 35.21329 * 18 16 14 37 37 H 1.08999 * 110.71978 * 272.11934 * 18 16 14 38 38 H 1.09003 * 109.88571 * 97.13745 * 19 18 16 39 39 H 1.09000 * 109.88700 * 218.14661 * 19 18 16 40 40 H 1.08002 * 120.07519 * 359.97438 * 24 23 21 41 41 H 1.07997 * 119.92369 * 180.23164 * 25 24 23 42 42 H 1.07994 * 119.85809 * 179.72184 * 26 25 24 43 43 H 1.08001 * 119.93193 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.06983 * 179.97438 * 28 27 26 45 45 H 1.09003 * 110.36811 * 142.97222 * 29 20 19 46 46 H 1.09002 * 110.36762 * 265.28797 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2165 -2.6503 12 1 6.4995 2.2812 -1.3820 13 8 1.6560 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7376 0.2654 16 6 0.0070 3.4216 2.5087 17 1 0.7414 4.1548 2.8424 18 6 -1.3804 4.0824 2.2947 19 6 -1.9750 4.1163 3.7183 20 7 -1.2834 3.0846 4.5051 21 6 -1.5015 2.8116 5.8067 22 8 -0.9356 1.8739 6.3341 23 6 -2.4289 3.6526 6.5932 24 6 -3.2019 4.6260 5.9583 25 6 -4.0685 5.4045 6.6974 26 6 -4.1650 5.2288 8.0664 27 6 -3.3980 4.2689 8.7026 28 6 -2.5309 3.4806 7.9745 29 6 -0.3112 2.3989 3.6345 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0610 -2.9499 36 1 -1.9985 3.4756 1.6330 37 1 -1.2698 5.0919 1.8988 38 1 -1.8099 5.0965 4.1658 39 1 -3.0430 3.9021 3.6793 40 1 -3.1240 4.7674 4.8904 41 1 -4.6700 6.1555 6.2069 42 1 -4.8416 5.8438 8.6410 43 1 -3.4776 4.1369 9.7715 44 1 -1.9324 2.7320 8.4724 45 1 0.5929 2.1563 4.1928 46 1 -0.7513 1.4954 3.2124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860694170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -94.151868 kcal Electronic energy + Delta-G solvation = -28220.449711 eV Core-core repulsion = 24268.076547 eV Total energy + Delta-G solvation = -3952.373165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97077 -41.20988 -39.39724 -38.57241 -37.49985 -35.52115 -33.75442 -33.28490 -31.92892 -31.84304 -30.39855 -29.22854 -26.49946 -25.40326 -24.36318 -23.54760 -23.06142 -22.01955 -21.06342 -20.92569 -19.03259 -18.70681 -18.38769 -17.70172 -17.47286 -17.14845 -16.71180 -16.64570 -16.14450 -15.52142 -15.39846 -15.06526 -14.95058 -14.79313 -14.62538 -14.44878 -14.11973 -13.96367 -13.73546 -13.46222 -13.36300 -13.28888 -13.14907 -12.94021 -12.78847 -12.57279 -12.45120 -12.31746 -12.15969 -11.94431 -11.77132 -11.62743 -11.44909 -11.28022 -11.05384 -10.83982 -10.53110 -10.06386 -9.92460 -9.76151 -8.28126 -6.44640 -0.13542 0.44469 1.23421 1.40728 1.44224 1.51695 1.65898 1.76962 2.09754 2.41747 2.89824 3.01435 3.14620 3.36212 3.56212 3.81814 3.92748 4.02695 4.10128 4.12319 4.15710 4.26859 4.35462 4.37325 4.45944 4.51509 4.52040 4.56450 4.61992 4.65988 4.79169 4.82905 4.96816 5.01266 5.07302 5.09230 5.16046 5.19505 5.36926 5.39483 5.45713 5.50782 5.53991 5.66093 5.96959 5.98733 6.12815 6.30282 6.59473 6.93709 6.97154 7.26812 8.78212 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002382 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.575023 B =11754.407297 C =12057.257546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.226 3.774 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.978 3.022 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.268 1.268 13 O -0.364 6.364 14 C 0.459 3.541 15 O -0.531 6.531 16 C -0.091 4.091 17 H 0.138 0.862 18 C -0.112 4.112 19 C 0.089 3.911 20 N -0.610 5.610 21 C 0.567 3.433 22 O -0.585 6.585 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.092 4.092 27 C -0.132 4.132 28 C -0.083 4.083 29 C 0.125 3.875 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.271 0.729 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 13.443 17.327 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.173 3.827 4 H 0.030 0.970 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.193 1.193 13 O -0.281 6.281 14 C 0.303 3.697 15 O -0.421 6.421 16 C -0.111 4.111 17 H 0.156 0.844 18 C -0.149 4.149 19 C -0.031 4.031 20 N -0.343 5.343 21 C 0.359 3.641 22 O -0.466 6.466 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.110 4.110 27 C -0.150 4.150 28 C -0.102 4.102 29 C 0.001 3.999 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.135 0.865 45 H 0.097 0.903 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.933 12.813 17.169 27.307 hybrid contribution 1.253 -0.742 -0.549 1.557 sum -15.680 12.070 16.620 25.841 Atomic orbital electron populations 1.21706 0.96143 1.00542 1.00184 1.21874 0.94586 0.98275 1.02161 1.20358 0.94440 0.89206 0.78667 0.97022 1.21305 0.90705 1.40062 1.06825 0.91778 1.25766 1.04073 0.93900 0.94417 1.69997 1.37412 1.37832 1.09818 0.85303 0.77932 0.78817 0.77797 1.19237 1.20173 1.19251 1.86483 1.36132 1.62845 1.42597 1.23677 0.79572 0.76128 0.90347 1.90599 1.55675 1.58807 1.37041 1.22308 1.01153 0.98081 0.89566 0.84429 1.22768 0.91870 1.03738 0.96566 1.22959 0.97839 0.92448 0.89856 1.48336 1.39651 1.37357 1.08925 1.18578 0.81604 0.83768 0.80165 1.90763 1.52897 1.32150 1.70839 1.19779 1.01036 1.00243 0.94588 1.22981 0.94110 0.93010 1.03812 1.21611 0.98515 0.99947 0.94360 1.21856 0.97374 0.96355 0.95383 1.21427 0.96235 0.96081 1.01287 1.21357 0.97667 0.98485 0.92673 1.21977 0.93327 0.94451 0.90105 0.94466 0.94111 0.92312 0.89541 0.94043 0.92019 0.89855 0.86179 0.86669 0.87321 0.80475 0.82120 0.82604 0.83417 0.86475 0.90301 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.57 71.98 0.62 -4.99 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.22 2.25 29.85 0.07 12.29 16 4 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 5 C -0.55 -31.31 8.90 25.60 0.23 -31.09 16 6 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 7 C 0.02 1.02 5.29 84.65 0.45 1.46 16 8 N -0.91 -52.09 11.29 21.45 0.24 -51.85 16 9 Si 0.98 43.08 29.54 68.60 2.03 45.10 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 O -0.36 -17.14 9.81 -51.38 -0.50 -17.65 16 14 C 0.46 17.88 5.75 71.24 0.41 18.29 16 15 O -0.53 -22.90 12.86 21.97 0.28 -22.62 16 16 C -0.09 -2.42 3.56 -9.98 -0.04 -2.46 16 17 H 0.14 3.13 8.14 -2.38 -0.02 3.11 16 18 C -0.11 -2.05 6.07 31.78 0.19 -1.86 16 19 C 0.09 1.26 4.87 86.72 0.42 1.68 16 20 N -0.61 -14.42 3.33 -825.40 -2.75 -17.16 16 21 C 0.57 15.74 7.81 86.79 0.68 16.42 16 22 O -0.59 -21.50 16.67 -3.89 -0.06 -21.56 16 23 C -0.15 -3.22 5.87 -20.09 -0.12 -3.34 16 24 C -0.12 -1.61 8.60 22.53 0.19 -1.42 16 25 C -0.13 -1.16 10.03 22.23 0.22 -0.93 16 26 C -0.09 -0.85 10.04 22.33 0.22 -0.63 16 27 C -0.13 -1.74 10.03 22.23 0.22 -1.52 16 28 C -0.08 -1.65 9.59 22.53 0.22 -1.43 16 29 C 0.12 3.54 6.37 87.02 0.55 4.09 16 30 H 0.04 1.54 6.06 -2.38 -0.01 1.53 16 31 H 0.04 1.86 7.80 -2.39 -0.02 1.84 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 4.78 5.95 -2.39 -0.01 4.77 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.08 1.81 7.39 -2.39 -0.02 1.79 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 0.98 6.67 -2.39 -0.02 0.97 16 39 H 0.11 1.07 6.79 -2.39 -0.02 1.06 16 40 H 0.18 1.52 2.77 -7.21 -0.02 1.50 16 41 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.12 2.63 7.67 -2.91 -0.02 2.61 16 45 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 46 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 Total: -1.00 -75.57 371.15 4.93 -70.64 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.98 Total: 16.99 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.71 Total: -1.89 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -2.50 Total: -69.01 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -0.29 Total: -61.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -75.57 4.93 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860694170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.514 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds