Wall clock time and date at job start Tue Mar 31 2020 17:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00376 * 2 1 4 4 O 1.20832 * 119.99936 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00074 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.47150 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47119 * 180.02562 * 6 5 3 8 8 C 1.37100 * 120.00249 * 270.00113 * 7 6 5 9 9 H 1.08001 * 120.00310 * 144.66113 * 8 7 6 10 10 C 1.38949 * 119.99937 * 324.66606 * 8 7 6 11 11 N 1.31416 * 119.99841 * 336.56099 * 10 8 7 12 12 Si 1.86796 * 120.00416 * 156.56671 * 10 8 7 13 13 H 1.48505 * 109.46776 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47535 * 119.99554 * 12 10 8 15 15 H 1.48503 * 109.47168 * 240.00122 * 12 10 8 16 16 C 1.34779 * 119.99883 * 90.00089 * 7 6 5 17 17 O 1.21287 * 120.00050 * 4.78068 * 16 7 6 18 18 C 1.50700 * 119.99860 * 184.77999 * 16 7 6 19 19 H 1.09006 * 115.56471 * 80.01016 * 18 16 7 20 20 C 1.53001 * 117.49878 * 294.31853 * 18 16 7 21 21 H 1.08997 * 117.51712 * 359.97438 * 20 18 16 22 22 C 1.53001 * 117.49864 * 145.02203 * 20 18 16 23 23 C 1.52997 * 117.49957 * 225.69397 * 18 16 7 24 24 H 1.09000 * 117.52084 * 214.96898 * 23 18 16 25 25 C 1.50700 * 117.49998 * 0.02562 * 23 18 16 26 26 C 1.38235 * 119.99928 * 59.73166 * 25 23 18 27 27 C 1.38240 * 119.99877 * 179.74755 * 26 25 23 28 28 C 1.38233 * 119.99983 * 0.53211 * 27 26 25 29 29 C 1.38233 * 119.99860 * 359.74703 * 28 27 26 30 30 C 1.38229 * 120.00196 * 240.01559 * 25 23 18 31 31 H 1.08997 * 109.47288 * 300.00383 * 1 2 3 32 32 H 1.09004 * 109.47018 * 59.99932 * 1 2 3 33 33 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47164 * 60.00306 * 5 3 2 35 35 H 1.08996 * 109.47359 * 299.99949 * 5 3 2 36 36 H 1.08998 * 109.46981 * 60.00018 * 6 5 3 37 37 H 1.08996 * 109.46804 * 300.00113 * 6 5 3 38 38 H 0.96996 * 120.00293 * 185.23240 * 11 10 8 39 39 H 1.09002 * 109.47057 * 126.68931 * 22 20 18 40 40 H 1.08998 * 109.47023 * 6.69285 * 22 20 18 41 41 H 1.08996 * 109.47041 * 246.68994 * 22 20 18 42 42 H 1.07997 * 119.99969 * 0.02562 * 26 25 23 43 43 H 1.08001 * 119.99837 * 180.30153 * 27 26 25 44 44 H 1.07996 * 119.99991 * 179.77066 * 28 27 26 45 45 H 1.08001 * 120.00001 * 180.02562 * 29 28 27 46 46 H 1.08000 * 120.00253 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1479 2.8539 1.1883 9 1 7.1057 2.3623 1.2743 10 6 5.6095 3.5222 2.2811 11 7 4.7263 4.4778 2.0971 12 14 6.1412 3.0625 4.0118 13 1 7.1382 1.9638 3.9479 14 1 6.7488 4.2450 4.6736 15 1 4.9589 2.6129 4.7899 16 6 6.1361 2.8542 -1.1662 17 8 5.5290 2.9105 -2.2147 18 6 7.6428 2.8242 -1.1686 19 1 8.0939 1.8403 -1.0396 20 6 8.3742 4.0220 -0.5593 21 1 7.7659 4.8321 -0.1570 22 6 9.6827 3.7470 0.1845 23 6 8.3678 3.8201 -2.0759 24 1 9.2959 3.4919 -2.5438 25 6 7.5206 4.7564 -2.8985 26 6 6.6485 5.6284 -2.2739 27 6 5.8751 6.4909 -3.0283 28 6 5.9660 6.4739 -4.4075 29 6 6.8339 5.5979 -5.0322 30 6 7.6113 4.7394 -4.2777 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9564 0.7804 -0.8892 35 1 3.9557 0.7808 0.8908 36 1 3.6102 3.2358 0.8911 37 1 3.6109 3.2362 -0.8889 38 1 4.4072 4.9954 2.8528 39 1 10.4711 4.3816 -0.2205 40 1 9.9588 2.7001 0.0591 41 1 9.5505 3.9636 1.2445 42 1 6.5745 5.6388 -1.1966 43 1 5.1973 7.1755 -2.5401 44 1 5.3591 7.1451 -4.9969 45 1 6.9051 5.5849 -6.1098 46 1 8.2897 4.0553 -4.7658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:44 Heat of formation + Delta-G solvation = -65.337174 kcal Electronic energy + Delta-G solvation = -29261.157764 eV Core-core repulsion = 25310.034098 eV Total energy + Delta-G solvation = -3951.123666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.07830 -39.68481 -38.09879 -36.42639 -35.99226 -34.81115 -31.95097 -30.79824 -30.45964 -30.24671 -27.94021 -27.43314 -25.01881 -24.45015 -22.71743 -22.15961 -21.15009 -20.08386 -19.40185 -18.93484 -17.48614 -17.04291 -16.24755 -16.15256 -15.90522 -15.69649 -14.76860 -14.56483 -14.50018 -14.17173 -13.91303 -13.72564 -13.38170 -13.08250 -12.84461 -12.74896 -12.59632 -12.31698 -12.20944 -12.09485 -12.03207 -11.88419 -11.49168 -11.26266 -11.03625 -11.00680 -10.71398 -10.54620 -10.54168 -10.44728 -10.40241 -10.13314 -10.00976 -9.82884 -9.37040 -9.17472 -8.40802 -8.31117 -7.89243 -7.53120 -6.39827 -4.05129 1.91744 2.00628 2.66781 3.04248 3.07394 3.20193 3.22065 3.82907 4.04986 4.14343 4.57201 4.77934 4.89924 5.10106 5.23420 5.29223 5.30342 5.35957 5.47588 5.49847 5.59755 5.62778 5.65965 5.68331 5.81098 5.84603 5.91507 6.03511 6.11857 6.18467 6.20309 6.27432 6.34409 6.44728 6.54477 6.60068 6.63555 6.73422 6.88250 6.93507 6.99976 7.10687 7.26295 7.32117 7.50585 7.59507 7.88286 8.18107 8.36359 9.06105 9.49280 9.92510 10.62122 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.005060 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.614046 B = 5532.420305 C = 7442.475891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.126 3.874 7 N -0.436 5.436 8 C -0.338 4.338 9 H 0.093 0.907 10 C 0.046 3.954 11 N -0.853 5.853 12 Si 0.905 3.095 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.498 3.502 17 O -0.585 6.585 18 C -0.132 4.132 19 H 0.114 0.886 20 C -0.112 4.112 21 H 0.116 0.884 22 C -0.117 4.117 23 C -0.109 4.109 24 H 0.108 0.892 25 C -0.024 4.024 26 C -0.095 4.095 27 C -0.115 4.115 28 C -0.133 4.133 29 C -0.126 4.126 30 C -0.114 4.114 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.270 0.730 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -2.970 -3.991 5.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.163 4.163 6 C 0.002 3.998 7 N -0.155 5.155 8 C -0.465 4.465 9 H 0.111 0.889 10 C -0.161 4.161 11 N -0.489 5.489 12 Si 0.732 3.268 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.287 3.713 17 O -0.469 6.469 18 C -0.152 4.152 19 H 0.132 0.868 20 C -0.131 4.131 21 H 0.134 0.866 22 C -0.174 4.174 23 C -0.128 4.128 24 H 0.126 0.874 25 C -0.024 4.024 26 C -0.113 4.113 27 C -0.133 4.133 28 C -0.151 4.151 29 C -0.144 4.144 30 C -0.132 4.132 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.220 -2.544 -4.367 5.520 hybrid contribution -0.150 -0.323 1.059 1.117 sum 2.070 -2.866 -3.309 4.842 Atomic orbital electron populations 1.23165 0.77389 1.03010 1.02335 1.86537 1.22739 1.34471 1.84681 1.24092 0.92425 0.80879 0.71746 1.90653 1.67270 1.36214 1.45004 1.21904 0.85768 1.03525 1.05058 1.21163 0.82425 0.90813 1.05437 1.43352 1.04111 1.63263 1.04766 1.19409 1.05461 1.34734 0.86941 0.88905 1.25317 0.96562 0.94221 0.99991 1.69876 1.30320 1.16750 1.32002 0.86214 0.78739 0.78926 0.82926 1.19085 1.20736 1.20637 1.19502 0.87611 0.80143 0.84060 1.90583 1.69567 1.54667 1.32052 1.22162 0.93779 0.95542 1.03767 0.86839 1.22412 0.98292 1.00263 0.92108 0.86576 1.21327 0.94899 1.00800 1.00365 1.21256 0.99120 1.00182 0.92209 0.87448 1.18944 0.95745 0.94684 0.93016 1.21068 0.95028 0.94858 1.00352 1.21026 0.99034 0.99354 0.93916 1.20961 0.99544 0.99913 0.94724 1.20911 0.97524 0.97059 0.98930 1.20757 1.00240 0.99001 0.93233 0.92164 0.92191 0.88634 0.88682 0.87755 0.86618 0.91646 0.91926 0.92802 0.92905 0.91754 0.85860 0.86752 0.87059 0.86995 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.08 10.56 -39.23 -0.41 -6.50 16 3 C 0.47 9.05 7.96 36.00 0.29 9.34 16 4 O -0.50 -11.13 15.73 -18.76 -0.30 -11.42 16 5 C -0.12 -2.45 6.14 -27.88 -0.17 -2.63 16 6 C 0.13 2.97 4.34 -4.04 -0.02 2.95 16 7 N -0.44 -10.23 2.54 -114.81 -0.29 -10.52 16 8 C -0.34 -7.83 7.97 -14.93 -0.12 -7.95 16 9 H 0.09 2.07 7.15 -52.49 -0.38 1.70 16 10 C 0.05 1.08 4.92 -17.47 -0.09 1.00 16 11 N -0.85 -21.64 11.43 55.50 0.63 -21.00 16 12 Si 0.91 18.51 29.62 -169.99 -5.03 13.48 16 13 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.50 11.43 5.91 -10.98 -0.06 11.36 16 17 O -0.58 -14.91 14.81 5.55 0.08 -14.83 16 18 C -0.13 -2.51 4.56 -91.77 -0.42 -2.93 16 19 H 0.11 1.97 8.04 -51.93 -0.42 1.55 16 20 C -0.11 -1.95 4.34 -90.62 -0.39 -2.35 16 21 H 0.12 2.33 6.18 -51.93 -0.32 2.01 16 22 C -0.12 -1.65 10.19 37.16 0.38 -1.27 16 23 C -0.11 -1.87 5.76 -91.77 -0.53 -2.40 16 24 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 25 C -0.02 -0.45 4.27 -104.63 -0.45 -0.89 16 26 C -0.10 -1.90 7.73 -39.58 -0.31 -2.20 16 27 C -0.12 -2.12 10.05 -39.58 -0.40 -2.51 16 28 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 29 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 30 C -0.11 -1.95 9.74 -39.58 -0.39 -2.33 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.12 2.98 5.40 -51.93 -0.28 2.70 16 37 H 0.07 1.68 7.32 -51.93 -0.38 1.31 16 38 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.68 7.89 -51.93 -0.41 0.27 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 2.67 5.92 -52.49 -0.31 2.35 16 43 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -29.53 384.09 -8.63 -38.16 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.70 Total: 13.16 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.40 Total: -6.32 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.34 Total: -31.52 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.63 Total: -32.75 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.53 -8.63 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.178 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds