Wall clock time and date at job start Tue Mar 31 2020 17:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00376 * 2 1 4 4 O 1.20832 * 119.99936 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00074 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.47150 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47119 * 180.02562 * 6 5 3 8 8 C 1.37100 * 120.00249 * 270.00113 * 7 6 5 9 9 H 1.08001 * 120.00310 * 144.66113 * 8 7 6 10 10 C 1.38949 * 119.99937 * 324.66606 * 8 7 6 11 11 N 1.31416 * 119.99841 * 336.56099 * 10 8 7 12 12 Si 1.86796 * 120.00416 * 156.56671 * 10 8 7 13 13 H 1.48505 * 109.46776 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47535 * 119.99554 * 12 10 8 15 15 H 1.48503 * 109.47168 * 240.00122 * 12 10 8 16 16 C 1.34779 * 119.99883 * 90.00089 * 7 6 5 17 17 O 1.21287 * 120.00050 * 4.78068 * 16 7 6 18 18 C 1.50700 * 119.99860 * 184.77999 * 16 7 6 19 19 H 1.09006 * 115.56471 * 80.01016 * 18 16 7 20 20 C 1.53001 * 117.49878 * 294.31853 * 18 16 7 21 21 H 1.08997 * 117.51712 * 359.97438 * 20 18 16 22 22 C 1.53001 * 117.49864 * 145.02203 * 20 18 16 23 23 C 1.52997 * 117.49957 * 225.69397 * 18 16 7 24 24 H 1.09000 * 117.52084 * 214.96898 * 23 18 16 25 25 C 1.50700 * 117.49998 * 0.02562 * 23 18 16 26 26 C 1.38235 * 119.99928 * 59.73166 * 25 23 18 27 27 C 1.38240 * 119.99877 * 179.74755 * 26 25 23 28 28 C 1.38233 * 119.99983 * 0.53211 * 27 26 25 29 29 C 1.38233 * 119.99860 * 359.74703 * 28 27 26 30 30 C 1.38229 * 120.00196 * 240.01559 * 25 23 18 31 31 H 1.08997 * 109.47288 * 300.00383 * 1 2 3 32 32 H 1.09004 * 109.47018 * 59.99932 * 1 2 3 33 33 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47164 * 60.00306 * 5 3 2 35 35 H 1.08996 * 109.47359 * 299.99949 * 5 3 2 36 36 H 1.08998 * 109.46981 * 60.00018 * 6 5 3 37 37 H 1.08996 * 109.46804 * 300.00113 * 6 5 3 38 38 H 0.96996 * 120.00293 * 185.23240 * 11 10 8 39 39 H 1.09002 * 109.47057 * 126.68931 * 22 20 18 40 40 H 1.08998 * 109.47023 * 6.69285 * 22 20 18 41 41 H 1.08996 * 109.47041 * 246.68994 * 22 20 18 42 42 H 1.07997 * 119.99969 * 0.02562 * 26 25 23 43 43 H 1.08001 * 119.99837 * 180.30153 * 27 26 25 44 44 H 1.07996 * 119.99991 * 179.77066 * 28 27 26 45 45 H 1.08001 * 120.00001 * 180.02562 * 29 28 27 46 46 H 1.08000 * 120.00253 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1479 2.8539 1.1883 9 1 7.1057 2.3623 1.2743 10 6 5.6095 3.5222 2.2811 11 7 4.7263 4.4778 2.0971 12 14 6.1412 3.0625 4.0118 13 1 7.1382 1.9638 3.9479 14 1 6.7488 4.2450 4.6736 15 1 4.9589 2.6129 4.7899 16 6 6.1361 2.8542 -1.1662 17 8 5.5290 2.9105 -2.2147 18 6 7.6428 2.8242 -1.1686 19 1 8.0939 1.8403 -1.0396 20 6 8.3742 4.0220 -0.5593 21 1 7.7659 4.8321 -0.1570 22 6 9.6827 3.7470 0.1845 23 6 8.3678 3.8201 -2.0759 24 1 9.2959 3.4919 -2.5438 25 6 7.5206 4.7564 -2.8985 26 6 6.6485 5.6284 -2.2739 27 6 5.8751 6.4909 -3.0283 28 6 5.9660 6.4739 -4.4075 29 6 6.8339 5.5979 -5.0322 30 6 7.6113 4.7394 -4.2777 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9564 0.7804 -0.8892 35 1 3.9557 0.7808 0.8908 36 1 3.6102 3.2358 0.8911 37 1 3.6109 3.2362 -0.8889 38 1 4.4072 4.9954 2.8528 39 1 10.4711 4.3816 -0.2205 40 1 9.9588 2.7001 0.0591 41 1 9.5505 3.9636 1.2445 42 1 6.5745 5.6388 -1.1966 43 1 5.1973 7.1755 -2.5401 44 1 5.3591 7.1451 -4.9969 45 1 6.9051 5.5849 -6.1098 46 1 8.2897 4.0553 -4.7658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:43 Heat of formation + Delta-G solvation = -79.327278 kcal Electronic energy + Delta-G solvation = -29261.764421 eV Core-core repulsion = 25310.034098 eV Total energy + Delta-G solvation = -3951.730322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62738 -41.19689 -39.65682 -37.88626 -37.49423 -36.65589 -33.77076 -32.45666 -31.86935 -31.60363 -29.21662 -28.66924 -26.83669 -26.01483 -24.20612 -23.56469 -22.61317 -21.65084 -20.80162 -20.65353 -19.09004 -18.56804 -17.81139 -17.63130 -17.52227 -17.23141 -16.28862 -16.21568 -16.04998 -15.70842 -15.42720 -15.17441 -14.84663 -14.54022 -14.22703 -14.18995 -13.99059 -13.81597 -13.71002 -13.54456 -13.31172 -13.17183 -13.08952 -12.92197 -12.71922 -12.52375 -12.29880 -12.05782 -11.95995 -11.89991 -11.82913 -11.78199 -11.63746 -11.24114 -11.02152 -10.78956 -10.15290 -9.69888 -9.45936 -9.24160 -8.23108 -5.93583 0.54670 0.61878 1.09719 1.42016 1.51266 1.61794 1.64237 2.07851 2.37282 2.70255 3.03072 3.11985 3.29985 3.72526 3.81853 4.00551 4.08538 4.12529 4.16556 4.21356 4.25001 4.28310 4.28599 4.30970 4.38025 4.55342 4.57891 4.65167 4.68064 4.71924 4.81711 4.97007 5.00422 5.07299 5.12383 5.24445 5.24538 5.27119 5.38691 5.41186 5.55908 5.62413 5.66142 5.70719 5.87084 6.05932 6.24858 6.49444 6.66886 7.21413 7.67324 8.10730 8.79928 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.005060 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.614046 B = 5532.420305 C = 7442.475891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.113 4.113 6 C 0.134 3.866 7 N -0.446 5.446 8 C -0.335 4.335 9 H 0.107 0.893 10 C 0.004 3.996 11 N -0.894 5.894 12 Si 0.969 3.031 13 H -0.247 1.247 14 H -0.284 1.284 15 H -0.288 1.288 16 C 0.492 3.508 17 O -0.617 6.617 18 C -0.149 4.149 19 H 0.137 0.863 20 C -0.106 4.106 21 H 0.078 0.922 22 C -0.110 4.110 23 C -0.096 4.096 24 H 0.144 0.856 25 C -0.043 4.043 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.135 4.135 29 C -0.124 4.124 30 C -0.121 4.121 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.140 0.860 45 H 0.150 0.850 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 -4.981 -4.839 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.152 4.152 6 C 0.009 3.991 7 N -0.164 5.164 8 C -0.463 4.463 9 H 0.124 0.876 10 C -0.199 4.199 11 N -0.531 5.531 12 Si 0.794 3.206 13 H -0.170 1.170 14 H -0.210 1.210 15 H -0.214 1.214 16 C 0.282 3.718 17 O -0.504 6.504 18 C -0.169 4.169 19 H 0.155 0.845 20 C -0.125 4.125 21 H 0.097 0.903 22 C -0.167 4.167 23 C -0.114 4.114 24 H 0.162 0.838 25 C -0.043 4.043 26 C -0.139 4.139 27 C -0.157 4.157 28 C -0.153 4.153 29 C -0.142 4.142 30 C -0.138 4.138 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.158 0.842 45 H 0.167 0.833 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.143 -4.588 -5.210 8.085 hybrid contribution -0.864 0.342 1.223 1.536 sum 3.279 -4.247 -3.988 6.685 Atomic orbital electron populations 1.23584 0.74783 1.05914 1.02398 1.86504 1.25161 1.32331 1.83859 1.23886 0.92205 0.81272 0.71017 1.90644 1.67888 1.37544 1.46741 1.21669 0.86654 1.00821 1.06029 1.20855 0.83011 0.92902 1.02340 1.43553 1.03956 1.63473 1.05421 1.19694 1.05750 1.34141 0.86690 0.87575 1.26094 0.96614 0.93809 1.03388 1.70020 1.32178 1.18214 1.32736 0.85229 0.78321 0.78851 0.78236 1.17038 1.21012 1.21378 1.20186 0.89455 0.78881 0.83260 1.90540 1.70830 1.55947 1.33048 1.22187 0.91062 0.97292 1.06377 0.84513 1.22334 0.99045 0.98061 0.93050 0.90348 1.21324 0.93334 1.02494 0.99546 1.21452 0.99537 0.98524 0.91914 0.83822 1.19215 0.95942 0.94832 0.94302 1.20961 0.97100 0.96950 0.98924 1.21220 0.99396 0.99697 0.95362 1.21320 0.99781 1.00388 0.93837 1.21397 0.96165 0.95746 1.00863 1.21172 1.00670 0.99452 0.92546 0.92162 0.92208 0.84271 0.87950 0.86288 0.89033 0.95254 0.92301 0.90627 0.90978 0.92308 0.89233 0.86893 0.84177 0.83256 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.63 10.56 -51.33 -0.54 -12.18 16 3 C 0.47 18.66 7.96 71.23 0.57 19.23 16 4 O -0.54 -24.69 15.73 21.95 0.35 -24.34 16 5 C -0.11 -4.59 6.14 29.85 0.18 -4.40 16 6 C 0.13 6.67 4.34 86.38 0.37 7.04 16 7 N -0.45 -21.69 2.54 -635.54 -1.61 -23.30 16 8 C -0.34 -15.79 7.97 84.04 0.67 -15.12 16 9 H 0.11 4.65 7.15 -2.91 -0.02 4.63 16 10 C 0.00 0.18 4.92 84.93 0.42 0.60 16 11 N -0.89 -47.76 11.43 21.66 0.25 -47.51 16 12 Si 0.97 38.16 29.62 68.60 2.03 40.19 16 13 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 16 C 0.49 23.20 5.91 87.66 0.52 23.72 16 17 O -0.62 -32.62 14.81 -3.05 -0.05 -32.67 16 18 C -0.15 -5.57 4.56 -11.54 -0.05 -5.62 16 19 H 0.14 4.43 8.04 -2.38 -0.02 4.41 16 20 C -0.11 -3.66 4.34 -10.79 -0.05 -3.71 16 21 H 0.08 3.33 6.18 -2.39 -0.01 3.32 16 22 C -0.11 -2.84 10.19 71.98 0.73 -2.11 16 23 C -0.10 -3.17 5.76 -11.54 -0.07 -3.24 16 24 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 25 C -0.04 -1.60 4.27 -19.87 -0.08 -1.68 16 26 C -0.12 -5.11 7.73 22.27 0.17 -4.94 16 27 C -0.14 -5.34 10.05 22.27 0.22 -5.12 16 28 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 29 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 30 C -0.12 -3.87 9.74 22.27 0.22 -3.65 16 31 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 33 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.09 5.04 5.40 -2.39 -0.01 5.03 16 37 H 0.03 1.62 7.32 -2.39 -0.02 1.61 16 38 H 0.27 13.72 8.32 -92.71 -0.77 12.95 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.60 7.89 -2.39 -0.02 1.58 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 4.29 5.92 -2.91 -0.02 4.27 16 43 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -68.60 384.09 6.88 -61.73 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: 0.98 Total: 42.87 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.47 Total: -4.79 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.36 Total: -70.81 kcal Atomic # 8 Polarization: -68.95 SS G_CDS: -0.24 Total: -69.19 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -68.60 6.88 -61.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.599 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds