Wall clock time and date at job start Tue Mar 31 2020 17:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 117.00224 * 2 1 4 4 O 1.20827 * 119.99334 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46677 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46903 * 179.97438 * 6 5 3 8 8 C 1.37102 * 119.99945 * 82.69146 * 7 6 5 9 9 H 1.07991 * 120.00009 * 195.24782 * 8 7 6 10 10 C 1.38953 * 119.99893 * 15.24138 * 8 7 6 11 11 N 1.31414 * 119.99661 * 40.22447 * 10 8 7 12 12 Si 1.86798 * 120.00026 * 220.22688 * 10 8 7 13 13 H 1.48496 * 109.46954 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47005 * 120.00240 * 12 10 8 15 15 H 1.48502 * 109.47064 * 239.99843 * 12 10 8 16 16 C 1.34780 * 120.00321 * 262.68496 * 7 6 5 17 17 O 1.21291 * 119.99512 * 0.02562 * 16 7 6 18 18 C 1.50695 * 120.00167 * 180.02562 * 16 7 6 19 19 H 1.09009 * 115.54725 * 34.33418 * 18 16 7 20 20 C 1.53001 * 117.49991 * 248.62461 * 18 16 7 21 21 H 1.09007 * 117.49625 * 145.01805 * 20 18 16 22 22 C 1.52995 * 117.49876 * 0.02562 * 20 18 16 23 23 C 1.52995 * 59.99941 * 252.50793 * 20 18 16 24 24 H 1.09005 * 117.52142 * 252.51891 * 23 20 18 25 25 C 1.50697 * 117.49832 * 107.48615 * 23 20 18 26 26 C 1.38232 * 120.00520 * 232.46886 * 25 23 20 27 27 C 1.38241 * 120.00337 * 179.81263 * 26 25 23 28 28 C 1.38234 * 119.99526 * 0.41491 * 27 26 25 29 29 C 1.38233 * 120.00475 * 359.81740 * 28 27 26 30 30 C 1.38239 * 119.99729 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46813 * 60.00617 * 1 2 3 32 32 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47367 * 300.00739 * 1 2 3 34 34 H 1.08999 * 109.47171 * 59.99719 * 5 3 2 35 35 H 1.09003 * 109.47113 * 299.99072 * 5 3 2 36 36 H 1.09001 * 109.47425 * 300.00125 * 6 5 3 37 37 H 1.09009 * 109.47160 * 60.00226 * 6 5 3 38 38 H 0.97004 * 119.99763 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.47309 * 103.06541 * 22 20 18 40 40 H 1.08997 * 109.46867 * 223.06539 * 22 20 18 41 41 H 1.09003 * 109.47067 * 343.07198 * 22 20 18 42 42 H 1.08003 * 119.99617 * 359.97438 * 26 25 23 43 43 H 1.08001 * 120.00033 * 180.20568 * 27 26 25 44 44 H 1.08008 * 119.99520 * 179.79378 * 28 27 26 45 45 H 1.07997 * 120.00272 * 179.97438 * 29 28 27 46 46 H 1.07997 * 119.99726 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1566 2.7028 -1.1760 9 1 7.2194 2.5121 -1.1600 10 6 5.4919 2.8306 -2.3895 11 7 4.5597 3.7454 -2.5348 12 14 5.9232 1.7020 -3.8142 13 1 6.9980 0.7663 -3.3965 14 1 4.7205 0.9284 -4.2144 15 1 6.3944 2.5147 -4.9643 16 6 6.1274 3.0032 1.1591 17 8 5.5139 3.1054 2.2004 18 6 7.6323 3.0826 1.1602 19 1 8.0789 3.5531 0.2841 20 6 8.4000 1.9314 1.8130 21 1 9.3519 1.6440 1.3662 22 6 7.5811 0.7873 2.4141 23 6 8.3277 3.2931 2.5067 24 1 9.2317 3.9020 2.5165 25 6 7.4552 3.4052 3.7303 26 6 6.4986 4.3999 3.8084 27 6 5.6956 4.5003 4.9293 28 6 5.8553 3.6111 5.9756 29 6 6.8151 2.6193 5.8996 30 6 7.6151 2.5163 4.7769 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.9564 0.7804 -0.8891 35 1 3.9557 0.7810 0.8909 36 1 3.6108 3.2356 -0.8906 37 1 3.6101 3.2368 0.8894 38 1 4.0953 3.8344 -3.3819 39 1 7.6092 -0.0713 1.7431 40 1 8.0021 0.5076 3.3798 41 1 6.5487 1.1105 2.5475 42 1 6.3767 5.0971 2.9926 43 1 4.9460 5.2754 4.9888 44 1 5.2302 3.6916 6.8527 45 1 6.9401 1.9249 6.7172 46 1 8.3653 1.7417 4.7177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:48 Heat of formation + Delta-G solvation = -50.688950 kcal Electronic energy + Delta-G solvation = -29507.620702 eV Core-core repulsion = 25557.132231 eV Total energy + Delta-G solvation = -3950.488471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.12861 -39.86005 -38.07765 -36.48375 -35.97931 -34.76779 -31.96177 -30.94783 -30.37348 -30.06824 -28.12572 -27.51450 -25.15051 -24.57472 -22.74565 -21.93547 -21.36635 -20.04432 -19.36610 -18.84533 -17.41145 -16.64023 -16.40316 -16.20586 -15.99460 -15.96976 -15.13461 -14.59148 -14.48177 -14.23172 -14.05570 -13.67802 -13.54874 -13.22989 -13.00823 -12.68077 -12.48963 -12.23414 -12.15130 -11.96996 -11.88297 -11.83842 -11.47832 -11.40832 -11.23602 -11.01504 -10.67502 -10.55576 -10.53467 -10.42182 -10.41154 -10.08247 -10.04327 -9.64559 -9.40176 -9.20427 -8.68004 -8.18399 -7.80866 -7.54659 -6.56283 -3.92208 1.99578 2.11085 2.65919 3.00946 3.04125 3.19886 3.23722 3.56929 4.03198 4.33977 4.41535 4.57629 4.85623 5.15312 5.22743 5.26607 5.30130 5.37580 5.44554 5.53891 5.56563 5.62853 5.63773 5.71407 5.77342 5.82777 5.95507 6.04274 6.18793 6.24954 6.26937 6.28769 6.32083 6.42171 6.53046 6.63411 6.66763 6.72536 6.81785 6.90638 7.05145 7.13872 7.25366 7.31052 7.47202 7.64528 7.66110 8.16643 8.28661 8.99640 9.45436 9.87618 10.41464 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.004899 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.832063 B = 5713.991528 C = 7414.533449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.118 4.118 6 C 0.112 3.888 7 N -0.429 5.429 8 C -0.356 4.356 9 H 0.103 0.897 10 C 0.051 3.949 11 N -0.824 5.824 12 Si 0.886 3.114 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.282 1.282 16 C 0.484 3.516 17 O -0.582 6.582 18 C -0.141 4.141 19 H 0.120 0.880 20 C -0.121 4.121 21 H 0.103 0.897 22 C -0.129 4.129 23 C -0.103 4.103 24 H 0.111 0.889 25 C -0.032 4.032 26 C -0.024 4.024 27 C -0.136 4.136 28 C -0.126 4.126 29 C -0.144 4.144 30 C -0.114 4.114 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.271 0.729 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -5.116 6.994 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.157 4.157 6 C -0.012 4.012 7 N -0.146 5.146 8 C -0.482 4.482 9 H 0.120 0.880 10 C -0.158 4.158 11 N -0.459 5.459 12 Si 0.711 3.289 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.208 1.208 16 C 0.274 3.726 17 O -0.468 6.468 18 C -0.162 4.162 19 H 0.138 0.862 20 C -0.140 4.140 21 H 0.121 0.879 22 C -0.186 4.186 23 C -0.122 4.122 24 H 0.129 0.871 25 C -0.032 4.032 26 C -0.042 4.042 27 C -0.154 4.154 28 C -0.144 4.144 29 C -0.162 4.162 30 C -0.132 4.132 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.271 -4.670 7.318 8.774 hybrid contribution -0.156 -0.594 -1.206 1.354 sum 1.115 -5.264 6.112 8.143 Atomic orbital electron populations 1.23168 0.77362 1.03035 1.02328 1.86539 1.22758 1.34422 1.84659 1.24072 0.92409 0.80893 0.71702 1.90642 1.67266 1.36218 1.45081 1.21761 0.85700 1.03171 1.05060 1.21405 0.81890 0.91878 1.06051 1.43558 1.04484 1.60624 1.05909 1.19438 0.95012 1.51604 0.82180 0.87979 1.25050 0.96840 0.95452 0.98462 1.70125 1.24751 1.24822 1.26180 0.86550 0.79152 0.81812 0.81385 1.18798 1.20366 1.20787 1.19173 0.87727 0.81705 0.83945 1.90597 1.69058 1.55947 1.31216 1.22260 0.94216 1.03521 0.96245 0.86213 1.22267 0.99967 0.89746 1.02046 0.87892 1.21524 1.01334 0.96393 0.99369 1.21074 0.99580 1.00329 0.91202 0.87126 1.18762 0.96271 0.95290 0.92925 1.20638 0.92337 0.96347 0.94891 1.20888 1.00049 1.00049 0.94413 1.20891 0.98684 0.96287 0.98516 1.20816 0.97890 0.99312 0.98191 1.20820 0.99947 0.98799 0.93635 0.92159 0.88616 0.92177 0.87866 0.88680 0.85793 0.91267 0.91821 0.92908 0.92583 0.90594 0.87163 0.87315 0.87517 0.87414 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.18 10.57 -39.27 -0.41 -6.60 16 3 C 0.47 9.16 7.96 36.00 0.29 9.45 16 4 O -0.51 -11.11 15.73 -18.75 -0.29 -11.40 16 5 C -0.12 -2.38 6.08 -27.88 -0.17 -2.55 16 6 C 0.11 2.61 4.33 -4.04 -0.02 2.59 16 7 N -0.43 -10.01 2.64 -114.81 -0.30 -10.32 16 8 C -0.36 -8.42 8.85 -14.93 -0.13 -8.55 16 9 H 0.10 2.32 6.49 -52.49 -0.34 1.98 16 10 C 0.05 1.20 4.76 -17.47 -0.08 1.12 16 11 N -0.82 -20.79 11.26 55.50 0.62 -20.17 16 12 Si 0.89 18.30 29.69 -169.99 -5.05 13.26 16 13 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.48 10.67 5.99 -10.99 -0.07 10.61 16 17 O -0.58 -13.46 9.99 5.55 0.06 -13.41 16 18 C -0.14 -2.64 4.96 -91.78 -0.46 -3.09 16 19 H 0.12 2.23 7.06 -51.92 -0.37 1.86 16 20 C -0.12 -1.92 6.38 -90.62 -0.58 -2.50 16 21 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 22 C -0.13 -2.08 8.32 37.16 0.31 -1.77 16 23 C -0.10 -1.68 5.86 -91.78 -0.54 -2.22 16 24 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 25 C -0.03 -0.56 3.63 -104.62 -0.38 -0.94 16 26 C -0.02 -0.44 6.44 -39.58 -0.25 -0.69 16 27 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 28 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 29 C -0.14 -2.19 10.05 -39.58 -0.40 -2.58 16 30 C -0.11 -1.81 8.13 -39.58 -0.32 -2.13 16 31 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 35 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.12 3.18 5.10 -51.93 -0.26 2.92 16 37 H 0.07 1.71 7.17 -51.92 -0.37 1.34 16 38 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.80 6.17 -51.93 -0.32 0.48 16 41 H 0.08 1.47 5.55 -51.93 -0.29 1.18 16 42 H 0.11 2.15 7.73 -52.48 -0.41 1.75 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.11 1.57 6.53 -52.49 -0.34 1.23 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -28.15 372.97 -8.77 -36.92 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.49 Total: 12.92 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.53 Total: -6.83 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.32 Total: -30.48 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.65 Total: -31.41 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.05 Total: 13.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.15 -8.77 -36.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.765 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds