Wall clock time and date at job start Tue Mar 31 2020 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 117.00224 * 2 1 4 4 O 1.20827 * 119.99334 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46677 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46903 * 179.97438 * 6 5 3 8 8 C 1.37102 * 119.99945 * 82.69146 * 7 6 5 9 9 H 1.07991 * 120.00009 * 195.24782 * 8 7 6 10 10 C 1.38953 * 119.99893 * 15.24138 * 8 7 6 11 11 N 1.31414 * 119.99661 * 40.22447 * 10 8 7 12 12 Si 1.86798 * 120.00026 * 220.22688 * 10 8 7 13 13 H 1.48496 * 109.46954 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47005 * 120.00240 * 12 10 8 15 15 H 1.48502 * 109.47064 * 239.99843 * 12 10 8 16 16 C 1.34780 * 120.00321 * 262.68496 * 7 6 5 17 17 O 1.21291 * 119.99512 * 0.02562 * 16 7 6 18 18 C 1.50695 * 120.00167 * 180.02562 * 16 7 6 19 19 H 1.09009 * 115.54725 * 34.33418 * 18 16 7 20 20 C 1.53001 * 117.49991 * 248.62461 * 18 16 7 21 21 H 1.09007 * 117.49625 * 145.01805 * 20 18 16 22 22 C 1.52995 * 117.49876 * 0.02562 * 20 18 16 23 23 C 1.52995 * 59.99941 * 252.50793 * 20 18 16 24 24 H 1.09005 * 117.52142 * 252.51891 * 23 20 18 25 25 C 1.50697 * 117.49832 * 107.48615 * 23 20 18 26 26 C 1.38232 * 120.00520 * 232.46886 * 25 23 20 27 27 C 1.38241 * 120.00337 * 179.81263 * 26 25 23 28 28 C 1.38234 * 119.99526 * 0.41491 * 27 26 25 29 29 C 1.38233 * 120.00475 * 359.81740 * 28 27 26 30 30 C 1.38239 * 119.99729 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46813 * 60.00617 * 1 2 3 32 32 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47367 * 300.00739 * 1 2 3 34 34 H 1.08999 * 109.47171 * 59.99719 * 5 3 2 35 35 H 1.09003 * 109.47113 * 299.99072 * 5 3 2 36 36 H 1.09001 * 109.47425 * 300.00125 * 6 5 3 37 37 H 1.09009 * 109.47160 * 60.00226 * 6 5 3 38 38 H 0.97004 * 119.99763 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.47309 * 103.06541 * 22 20 18 40 40 H 1.08997 * 109.46867 * 223.06539 * 22 20 18 41 41 H 1.09003 * 109.47067 * 343.07198 * 22 20 18 42 42 H 1.08003 * 119.99617 * 359.97438 * 26 25 23 43 43 H 1.08001 * 120.00033 * 180.20568 * 27 26 25 44 44 H 1.08008 * 119.99520 * 179.79378 * 28 27 26 45 45 H 1.07997 * 120.00272 * 179.97438 * 29 28 27 46 46 H 1.07997 * 119.99726 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1566 2.7028 -1.1760 9 1 7.2194 2.5121 -1.1600 10 6 5.4919 2.8306 -2.3895 11 7 4.5597 3.7454 -2.5348 12 14 5.9232 1.7020 -3.8142 13 1 6.9980 0.7663 -3.3965 14 1 4.7205 0.9284 -4.2144 15 1 6.3944 2.5147 -4.9643 16 6 6.1274 3.0032 1.1591 17 8 5.5139 3.1054 2.2004 18 6 7.6323 3.0826 1.1602 19 1 8.0789 3.5531 0.2841 20 6 8.4000 1.9314 1.8130 21 1 9.3519 1.6440 1.3662 22 6 7.5811 0.7873 2.4141 23 6 8.3277 3.2931 2.5067 24 1 9.2317 3.9020 2.5165 25 6 7.4552 3.4052 3.7303 26 6 6.4986 4.3999 3.8084 27 6 5.6956 4.5003 4.9293 28 6 5.8553 3.6111 5.9756 29 6 6.8151 2.6193 5.8996 30 6 7.6151 2.5163 4.7769 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.9564 0.7804 -0.8891 35 1 3.9557 0.7810 0.8909 36 1 3.6108 3.2356 -0.8906 37 1 3.6101 3.2368 0.8894 38 1 4.0953 3.8344 -3.3819 39 1 7.6092 -0.0713 1.7431 40 1 8.0021 0.5076 3.3798 41 1 6.5487 1.1105 2.5475 42 1 6.3767 5.0971 2.9926 43 1 4.9460 5.2754 4.9888 44 1 5.2302 3.6916 6.8527 45 1 6.9401 1.9249 6.7172 46 1 8.3653 1.7417 4.7177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:47 Heat of formation + Delta-G solvation = -63.079399 kcal Electronic energy + Delta-G solvation = -29508.157992 eV Core-core repulsion = 25557.132231 eV Total energy + Delta-G solvation = -3951.025762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66321 -41.31432 -39.56032 -37.92156 -37.46144 -36.49326 -33.75577 -32.61160 -31.65516 -31.36677 -29.42697 -28.75205 -26.93093 -26.11534 -24.15182 -23.22399 -22.81619 -21.62539 -20.65539 -20.53535 -18.99446 -18.12352 -18.01855 -17.66500 -17.51610 -17.31306 -16.68548 -16.12362 -15.98883 -15.68991 -15.42707 -15.26716 -14.99653 -14.66656 -14.27826 -14.19560 -13.87489 -13.82328 -13.57853 -13.44477 -13.22061 -13.09429 -13.00743 -12.93109 -12.73740 -12.54684 -12.31603 -12.04762 -11.97086 -11.85846 -11.79348 -11.68001 -11.65062 -11.03783 -10.96133 -10.72800 -10.22861 -9.64759 -9.44756 -8.98370 -8.35375 -5.76792 0.72453 0.81873 1.08219 1.36458 1.50825 1.61371 1.64449 1.97793 2.33789 2.85856 2.95039 3.12145 3.20692 3.79817 3.84440 3.98649 4.08223 4.12478 4.25316 4.27431 4.27580 4.29313 4.34405 4.40560 4.44041 4.51933 4.57361 4.65356 4.72032 4.80877 4.91945 4.97803 5.00901 5.04909 5.19840 5.20943 5.23904 5.37837 5.38446 5.40035 5.56487 5.61914 5.79873 5.84591 5.87952 6.00575 6.39049 6.45883 6.65280 7.19187 7.69826 8.12528 8.63341 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.004899 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.832063 B = 5713.991528 C = 7414.533449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.107 4.107 6 C 0.120 3.880 7 N -0.445 5.445 8 C -0.362 4.362 9 H 0.111 0.889 10 C 0.012 3.988 11 N -0.865 5.865 12 Si 0.950 3.050 13 H -0.251 1.251 14 H -0.281 1.281 15 H -0.284 1.284 16 C 0.481 3.519 17 O -0.597 6.597 18 C -0.170 4.170 19 H 0.116 0.884 20 C -0.099 4.099 21 H 0.136 0.864 22 C -0.127 4.127 23 C -0.094 4.094 24 H 0.135 0.865 25 C -0.045 4.045 26 C -0.050 4.050 27 C -0.153 4.153 28 C -0.131 4.131 29 C -0.142 4.142 30 C -0.116 4.116 31 H 0.059 0.941 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.271 0.729 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.140 0.860 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -7.892 7.963 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.146 4.146 6 C -0.005 4.005 7 N -0.163 5.163 8 C -0.488 4.488 9 H 0.128 0.872 10 C -0.193 4.193 11 N -0.501 5.501 12 Si 0.774 3.226 13 H -0.175 1.175 14 H -0.207 1.207 15 H -0.211 1.211 16 C 0.272 3.728 17 O -0.483 6.483 18 C -0.191 4.191 19 H 0.134 0.866 20 C -0.118 4.118 21 H 0.154 0.846 22 C -0.184 4.184 23 C -0.112 4.112 24 H 0.153 0.847 25 C -0.045 4.045 26 C -0.069 4.069 27 C -0.171 4.171 28 C -0.149 4.149 29 C -0.160 4.160 30 C -0.134 4.134 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.892 -7.470 8.299 11.535 hybrid contribution -0.732 0.297 -1.363 1.576 sum 2.160 -7.173 6.936 10.209 Atomic orbital electron populations 1.23589 0.74731 1.05922 1.02442 1.86507 1.25226 1.32400 1.83872 1.23871 0.92176 0.81309 0.71064 1.90630 1.67814 1.37429 1.46660 1.21535 0.86575 1.00981 1.05506 1.21112 0.82486 0.93561 1.03331 1.43757 1.04297 1.61761 1.06473 1.19712 0.95513 1.51248 0.82374 0.87168 1.25779 0.96877 0.96026 1.00594 1.70212 1.26538 1.26558 1.26797 0.85564 0.78886 0.79861 0.78285 1.17456 1.20682 1.21058 1.19821 0.89365 0.80301 0.83299 1.90594 1.70026 1.56024 1.31706 1.22173 0.91950 1.07114 0.97869 0.86574 1.22465 1.00204 0.88929 1.00161 0.84598 1.21503 0.99320 0.96653 1.00952 1.21236 0.99501 1.01172 0.89314 0.84695 1.18938 0.96253 0.95306 0.93981 1.20572 0.94209 0.97182 0.94927 1.21081 1.00178 1.00974 0.94884 1.21217 0.99153 0.95825 0.98725 1.21247 0.96811 0.99184 0.98788 1.21104 1.00423 0.98668 0.93235 0.92219 0.84316 0.92021 0.87440 0.87938 0.88166 0.94090 0.91940 0.91916 0.90261 0.94194 0.89955 0.87084 0.85002 0.84206 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.91 10.57 -51.47 -0.54 -12.46 16 3 C 0.47 18.83 7.96 71.24 0.57 19.40 16 4 O -0.54 -24.38 15.73 21.96 0.35 -24.03 16 5 C -0.11 -4.43 6.08 29.85 0.18 -4.25 16 6 C 0.12 5.88 4.33 86.38 0.37 6.25 16 7 N -0.45 -21.49 2.64 -635.52 -1.68 -23.17 16 8 C -0.36 -17.35 8.85 84.04 0.74 -16.61 16 9 H 0.11 4.99 6.49 -2.92 -0.02 4.97 16 10 C 0.01 0.60 4.76 84.93 0.40 1.00 16 11 N -0.86 -45.26 11.26 21.66 0.24 -45.02 16 12 Si 0.95 37.62 29.69 68.60 2.04 39.66 16 13 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 14 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 15 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 16 C 0.48 21.80 5.99 87.66 0.53 22.32 16 17 O -0.60 -28.73 9.99 -3.07 -0.03 -28.76 16 18 C -0.17 -6.29 4.96 -11.54 -0.06 -6.34 16 19 H 0.12 4.32 7.06 -2.38 -0.02 4.30 16 20 C -0.10 -2.87 6.38 -10.80 -0.07 -2.94 16 21 H 0.14 3.10 8.14 -2.38 -0.02 3.08 16 22 C -0.13 -3.77 8.32 71.98 0.60 -3.17 16 23 C -0.09 -2.91 5.86 -11.54 -0.07 -2.97 16 24 H 0.14 3.47 8.14 -2.38 -0.02 3.45 16 25 C -0.04 -1.51 3.63 -19.87 -0.07 -1.58 16 26 C -0.05 -1.92 6.44 22.27 0.14 -1.78 16 27 C -0.15 -5.33 10.05 22.27 0.22 -5.11 16 28 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 29 C -0.14 -3.94 10.05 22.27 0.22 -3.71 16 30 C -0.12 -3.40 8.13 22.27 0.18 -3.22 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 35 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.10 5.46 5.10 -2.39 -0.01 5.45 16 37 H 0.04 2.17 7.17 -2.38 -0.02 2.15 16 38 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 1.95 6.17 -2.39 -0.01 1.94 16 41 H 0.04 1.49 5.55 -2.39 -0.01 1.48 16 42 H 0.08 3.48 7.73 -2.91 -0.02 3.46 16 43 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 44 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.14 3.25 6.53 -2.91 -0.02 3.23 16 Total: -1.00 -63.88 372.97 6.69 -57.20 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: 0.99 Total: 41.17 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.32 Total: -4.59 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -1.43 Total: -68.18 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -0.23 Total: -65.25 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.04 Total: 39.66 kcal Total: -63.88 6.69 -57.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.884 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds