Wall clock time and date at job start Tue Mar 31 2020 17:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00320 * 2 1 4 4 O 1.20833 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00482 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47557 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47386 * 179.97438 * 6 5 3 8 8 C 1.37099 * 119.99750 * 263.62465 * 7 6 5 9 9 H 1.08001 * 119.99555 * 141.97531 * 8 7 6 10 10 C 1.38946 * 120.00329 * 321.98167 * 8 7 6 11 11 N 1.31414 * 120.00144 * 157.95486 * 10 8 7 12 12 Si 1.86805 * 119.99691 * 337.95577 * 10 8 7 13 13 H 1.48501 * 109.47155 * 95.69704 * 12 10 8 14 14 H 1.48499 * 109.46718 * 215.69273 * 12 10 8 15 15 H 1.48495 * 109.47328 * 335.69023 * 12 10 8 16 16 C 1.34774 * 120.00128 * 83.62482 * 7 6 5 17 17 O 1.21286 * 119.99817 * 0.02562 * 16 7 6 18 18 C 1.50699 * 119.99975 * 180.02562 * 16 7 6 19 19 H 1.08994 * 115.56266 * 34.30594 * 18 16 7 20 20 C 1.53001 * 117.49717 * 248.62485 * 18 16 7 21 21 H 1.08997 * 117.50124 * 145.02322 * 20 18 16 22 22 C 1.53006 * 117.51694 * 359.97438 * 20 18 16 23 23 C 1.52996 * 117.49897 * 180.02562 * 18 16 7 24 24 H 1.09003 * 117.51679 * 0.02562 * 23 18 16 25 25 C 1.50701 * 117.49923 * 214.97746 * 23 18 16 26 26 C 1.38238 * 120.00066 * 119.98313 * 25 23 18 27 27 C 1.38230 * 119.99823 * 179.97438 * 26 25 23 28 28 C 1.38243 * 120.00160 * 0.02562 * 27 26 25 29 29 C 1.38226 * 119.99857 * 0.06752 * 28 27 26 30 30 C 1.38239 * 119.99731 * 299.96349 * 25 23 18 31 31 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47437 * 300.00051 * 1 2 3 33 33 H 1.09005 * 109.47104 * 60.00034 * 1 2 3 34 34 H 1.08999 * 109.47020 * 59.99572 * 5 3 2 35 35 H 1.09001 * 109.47019 * 300.00204 * 5 3 2 36 36 H 1.08999 * 109.47384 * 59.99698 * 6 5 3 37 37 H 1.09001 * 109.47043 * 300.00092 * 6 5 3 38 38 H 0.96999 * 120.00136 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47163 * 351.37561 * 22 20 18 40 40 H 1.08997 * 109.47137 * 111.37732 * 22 20 18 41 41 H 1.09003 * 109.46939 * 231.37639 * 22 20 18 42 42 H 1.07993 * 119.99649 * 359.97438 * 26 25 23 43 43 H 1.08000 * 120.00029 * 179.71900 * 27 26 25 44 44 H 1.08001 * 119.99966 * 179.97438 * 28 27 26 45 45 H 1.07999 * 119.99969 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00151 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1408 2.9856 1.1803 9 1 7.0770 2.4722 1.3427 10 6 5.6230 3.8151 2.1675 11 7 5.9964 3.6606 3.4180 12 14 4.3962 5.1498 1.7170 13 1 3.0158 4.6469 1.9334 14 1 4.6276 6.3431 2.5701 15 1 4.5700 5.5206 0.2896 16 6 6.1430 2.7251 -1.1598 17 8 5.5434 2.5779 -2.2038 18 6 7.6479 2.8034 -1.1596 19 1 8.1415 2.3672 -0.2912 20 6 8.2910 4.0400 -1.7906 21 1 9.2077 4.4173 -1.3373 22 6 7.3573 5.1025 -2.3740 23 6 8.3613 2.6912 -2.5084 24 1 7.7423 2.5612 -3.3962 25 6 9.6926 1.9855 -2.5349 26 6 9.8615 0.8574 -3.3158 27 6 11.0828 0.2104 -3.3404 28 6 12.1352 0.6913 -2.5839 29 6 11.9657 1.8182 -1.8016 30 6 10.7450 2.4666 -1.7787 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.9557 0.7808 -0.8908 35 1 3.9564 0.7805 0.8891 36 1 3.6108 3.2356 0.8906 37 1 3.6101 3.2367 -0.8893 38 1 5.6346 4.2394 4.1072 39 1 6.3349 4.7248 -2.3784 40 1 7.4086 6.0051 -1.7652 41 1 7.6634 5.3344 -3.3942 42 1 9.0392 0.4815 -3.9064 43 1 11.2134 -0.6736 -3.9469 44 1 13.0892 0.1855 -2.6029 45 1 12.7877 2.1937 -1.2103 46 1 10.6133 3.3484 -1.1692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:52 Heat of formation + Delta-G solvation = -64.474418 kcal Electronic energy + Delta-G solvation = -28457.876826 eV Core-core repulsion = 24506.790572 eV Total energy + Delta-G solvation = -3951.086254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27585 -39.89469 -38.74867 -36.73052 -36.16223 -34.92427 -32.32686 -31.11973 -30.87465 -30.65220 -28.05054 -27.56708 -25.12806 -24.81376 -23.19975 -22.54921 -21.31894 -20.41084 -19.70205 -18.79214 -17.54304 -17.09526 -16.59120 -16.43896 -16.37984 -15.99793 -15.17317 -14.95260 -14.75790 -14.57523 -14.10525 -13.84630 -13.63260 -13.26245 -13.24489 -12.83631 -12.72480 -12.66831 -12.57953 -12.32104 -12.16822 -11.93558 -11.78487 -11.63097 -11.19930 -11.10589 -11.03728 -10.83921 -10.73398 -10.66803 -10.27537 -10.21562 -10.05299 -9.95138 -9.51564 -9.29457 -8.80914 -8.71525 -8.30095 -7.93443 -6.55107 -4.16822 1.45149 1.52384 2.49122 2.88238 3.06809 3.22404 3.30214 3.43717 3.83148 4.08960 4.22718 4.44464 4.84206 4.92586 5.01121 5.07940 5.12720 5.15599 5.21919 5.22677 5.31814 5.34473 5.49944 5.51238 5.55717 5.62505 5.65100 5.71309 5.81049 6.00931 6.03572 6.09796 6.15648 6.21101 6.24958 6.30839 6.42578 6.46994 6.51384 6.61341 6.61735 6.65257 6.76577 6.88428 7.12773 7.23501 7.96484 8.00207 8.15409 8.86965 9.24036 9.55315 10.54675 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003657 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.926014 B = 7654.696518 C = 8871.765295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.117 3.883 7 N -0.457 5.457 8 C -0.348 4.348 9 H 0.108 0.892 10 C 0.073 3.927 11 N -0.855 5.855 12 Si 0.864 3.136 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.259 1.259 16 C 0.513 3.487 17 O -0.592 6.592 18 C -0.130 4.130 19 H 0.124 0.876 20 C -0.116 4.116 21 H 0.108 0.892 22 C -0.128 4.128 23 C -0.104 4.104 24 H 0.121 0.879 25 C -0.038 4.038 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.133 4.133 29 C -0.118 4.118 30 C -0.120 4.120 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.276 0.724 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -4.989 -7.987 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.399 6.399 5 C -0.162 4.162 6 C -0.007 4.007 7 N -0.177 5.177 8 C -0.475 4.475 9 H 0.125 0.875 10 C -0.135 4.135 11 N -0.489 5.489 12 Si 0.691 3.309 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.183 1.183 16 C 0.303 3.697 17 O -0.478 6.478 18 C -0.151 4.151 19 H 0.141 0.859 20 C -0.135 4.135 21 H 0.126 0.874 22 C -0.185 4.185 23 C -0.122 4.122 24 H 0.139 0.861 25 C -0.038 4.038 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.151 4.151 29 C -0.136 4.136 30 C -0.137 4.137 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.117 -4.698 -8.254 9.996 hybrid contribution -0.822 0.686 0.295 1.111 sum 2.295 -4.011 -7.959 9.203 Atomic orbital electron populations 1.23204 0.77084 1.03248 1.02395 1.86536 1.22942 1.33999 1.84413 1.24012 0.92309 0.81024 0.71571 1.90648 1.67383 1.36337 1.45524 1.21811 0.86157 1.01817 1.06430 1.21409 0.83109 0.93216 1.02963 1.43632 1.03546 1.63890 1.06593 1.19040 1.08918 1.28901 0.90622 0.87500 1.25297 0.96963 0.96660 0.94628 1.69757 1.42922 1.36620 0.99639 0.87110 0.81395 0.82344 0.80067 1.19580 1.21255 1.18289 1.19439 0.87971 0.79320 0.82928 1.90546 1.70363 1.54984 1.31874 1.22265 0.93298 1.03269 0.96262 0.85851 1.22349 1.00473 0.88956 1.01720 0.87369 1.21422 0.99941 0.97474 0.99683 1.21218 0.94544 0.99133 0.97341 0.86106 1.19254 0.93692 0.94863 0.95994 1.21002 0.97371 0.95331 0.99488 1.21088 0.93291 0.99829 0.99662 1.21081 0.98834 0.97209 0.97958 1.21102 0.97325 0.96017 0.99171 1.21144 0.92796 1.00390 0.99413 0.88410 0.92061 0.92112 0.87333 0.86790 0.90209 0.90638 0.91375 0.91148 0.92347 0.92569 0.86041 0.86356 0.86525 0.86276 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.68 10.56 -39.24 -0.41 -6.10 16 3 C 0.47 8.60 7.96 36.00 0.29 8.88 16 4 O -0.51 -10.63 15.73 -18.76 -0.30 -10.92 16 5 C -0.12 -2.33 6.08 -27.89 -0.17 -2.50 16 6 C 0.12 2.58 3.21 -4.04 -0.01 2.57 16 7 N -0.46 -10.51 2.18 -114.82 -0.25 -10.76 16 8 C -0.35 -8.60 9.08 -14.93 -0.14 -8.74 16 9 H 0.11 2.74 6.78 -52.49 -0.36 2.39 16 10 C 0.07 1.86 5.26 -17.47 -0.09 1.77 16 11 N -0.85 -22.84 13.96 55.50 0.77 -22.06 16 12 Si 0.86 20.44 25.05 -169.99 -4.26 16.19 16 13 H -0.27 -6.42 6.70 56.52 0.38 -6.04 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.51 11.28 6.00 -10.99 -0.07 11.21 16 17 O -0.59 -13.77 15.00 5.55 0.08 -13.69 16 18 C -0.13 -2.47 4.93 -91.77 -0.45 -2.92 16 19 H 0.12 2.39 6.80 -51.93 -0.35 2.04 16 20 C -0.12 -1.92 5.73 -90.64 -0.52 -2.44 16 21 H 0.11 1.59 6.18 -51.93 -0.32 1.27 16 22 C -0.13 -2.14 10.03 37.16 0.37 -1.77 16 23 C -0.10 -1.70 5.27 -91.80 -0.48 -2.18 16 24 H 0.12 2.08 7.67 -51.93 -0.40 1.69 16 25 C -0.04 -0.56 5.61 -104.62 -0.59 -1.15 16 26 C -0.11 -1.54 9.74 -39.58 -0.39 -1.92 16 27 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 28 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 30 C -0.12 -1.63 9.30 -39.58 -0.37 -2.00 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 36 H 0.08 1.88 3.62 -51.93 -0.19 1.69 16 37 H 0.08 1.72 7.58 -51.93 -0.39 1.32 16 38 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.07 1.38 5.71 -51.93 -0.30 1.09 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 1.61 6.02 -52.49 -0.32 1.30 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -29.61 380.16 -7.80 -37.41 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.43 Total: 9.48 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.74 Total: -5.26 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.52 Total: -32.83 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.63 Total: -30.71 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.26 Total: 16.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.61 -7.80 -37.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.065 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds